Wall clock time and date at job start Tue Mar 31 2020 22:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 S 1.77238 * 127.33941 * 2 1 4 4 C 1.72210 * 94.84481 * 179.97438 * 3 2 1 5 5 O 1.21832 * 127.05437 * 180.26347 * 4 3 2 6 6 N 1.34244 * 105.88702 * 0.02562 * 4 3 2 7 7 C 1.46501 * 121.38050 * 179.97438 * 6 4 3 8 8 C 1.50694 * 109.47050 * 90.02275 * 7 6 4 9 9 O 1.21274 * 120.00183 * 0.02562 * 8 7 6 10 10 N 1.34783 * 119.99724 * 180.02562 * 8 7 6 11 11 C 1.46497 * 120.00131 * 0.02562 * 10 8 7 12 12 C 1.46498 * 119.99912 * 180.02562 * 10 8 7 13 13 H 1.09000 * 110.88905 * 359.30110 * 12 10 8 14 14 C 1.55160 * 111.00310 * 123.17819 * 12 10 8 15 15 C 1.54324 * 102.94240 * 153.57772 * 14 12 10 16 16 N 1.47021 * 107.26879 * 337.80848 * 15 14 12 17 17 C 1.36948 * 125.64601 * 178.97592 * 16 15 14 18 18 H 1.07998 * 119.99478 * 179.97438 * 17 16 15 19 19 C 1.38804 * 120.00013 * 359.97413 * 17 16 15 20 20 N 1.31621 * 119.99947 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99971 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47183 * 60.00138 * 21 19 17 23 23 H 1.48496 * 109.47111 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.46714 * 299.99914 * 21 19 17 25 25 C 1.47463 * 108.72503 * 358.97326 * 16 15 14 26 26 C 1.32565 * 127.34446 * 179.97438 * 2 1 3 27 27 C 1.50699 * 121.63933 * 0.06389 * 26 2 1 28 28 H 1.08993 * 109.47558 * 270.05583 * 1 2 3 29 29 H 1.09006 * 109.47131 * 30.05141 * 1 2 3 30 30 H 1.09000 * 109.47072 * 150.05289 * 1 2 3 31 31 H 1.08996 * 109.46788 * 210.02891 * 7 6 4 32 32 H 1.09006 * 109.46964 * 330.02520 * 7 6 4 33 33 H 1.08996 * 109.47023 * 90.00039 * 11 10 8 34 34 H 1.08999 * 109.47294 * 210.00060 * 11 10 8 35 35 H 1.09000 * 109.47383 * 330.00042 * 11 10 8 36 36 H 1.09004 * 110.71823 * 271.93685 * 14 12 10 37 37 H 1.08992 * 110.72183 * 35.03677 * 14 12 10 38 38 H 1.08997 * 109.88288 * 97.22543 * 15 14 12 39 39 H 1.08999 * 109.88266 * 218.23908 * 15 14 12 40 40 H 0.97005 * 119.99762 * 179.97438 * 20 19 17 41 41 H 1.08999 * 110.35467 * 265.25451 * 25 16 15 42 42 H 1.09004 * 110.40407 * 142.91615 * 25 16 15 43 43 H 1.08997 * 109.47413 * 269.97656 * 27 26 2 44 44 H 1.09001 * 109.47347 * 29.98310 * 27 26 2 45 45 H 1.09004 * 109.46947 * 149.97872 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 16 2.5819 1.4091 0.0000 4 6 4.0344 0.4840 0.0008 5 8 5.1760 0.9097 0.0055 6 7 3.6507 -0.8024 0.0004 7 6 4.6312 -1.8910 0.0003 8 6 4.9668 -2.2649 1.4210 9 8 4.4386 -1.6801 2.3429 10 7 5.8539 -3.2492 1.6672 11 6 6.4924 -3.9552 0.5536 12 6 6.1797 -3.6132 3.0484 13 1 5.6322 -2.9887 3.7543 14 6 5.9037 -5.1180 3.3068 15 6 6.8809 -5.4569 4.4522 16 7 7.9554 -4.4539 4.4202 17 6 9.0133 -4.3897 5.2876 18 1 9.7537 -3.6109 5.1794 19 6 9.1339 -5.3256 6.3055 20 7 8.2313 -6.2744 6.4376 21 14 10.5765 -5.2376 7.4890 22 1 10.5543 -3.9344 8.2006 23 1 10.4754 -6.3427 8.4758 24 1 11.8471 -5.3662 6.7311 25 6 7.7059 -3.5283 3.2997 26 6 2.3111 -1.0539 0.0005 27 6 1.7706 -2.4606 -0.0003 28 1 -0.3634 0.0010 1.0276 29 1 -0.3634 0.8896 -0.5147 30 1 -0.3633 -0.8905 -0.5130 31 1 4.2134 -2.7562 -0.5142 32 1 5.5360 -1.5649 -0.5129 33 1 7.4140 -3.4422 0.2788 34 1 6.7217 -4.9773 0.8551 35 1 5.8167 -3.9715 -0.3015 36 1 4.8717 -5.2722 3.6221 37 1 6.1266 -5.7090 2.4186 38 1 6.3605 -5.4122 5.4089 39 1 7.2963 -6.4534 4.3024 40 1 8.3158 -6.9286 7.1488 41 1 8.2546 -3.8486 2.4140 42 1 7.9890 -2.5125 3.5757 43 1 1.6398 -2.8002 1.0271 44 1 0.8098 -2.4805 -0.5148 45 1 2.4714 -3.1188 -0.5140 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033684762.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:53 Heat of formation + Delta-G solvation = 3.148184 kcal Electronic energy + Delta-G solvation = -27778.363423 eV Core-core repulsion = 23924.343023 eV Total energy + Delta-G solvation = -3854.020399 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -41.46246 -39.64032 -37.85565 -37.34480 -34.95920 -33.84710 -32.24949 -30.53742 -29.74894 -29.10585 -27.64653 -26.71563 -25.37702 -24.50679 -23.63289 -20.94457 -20.19272 -19.95941 -18.97400 -18.45705 -17.78958 -17.15824 -16.86535 -16.27082 -15.68545 -15.50807 -15.25518 -14.63832 -14.28990 -14.14375 -14.12692 -13.91284 -13.79763 -13.37231 -13.23641 -12.92126 -12.81702 -12.77829 -12.52544 -12.45852 -12.24031 -12.03800 -11.77814 -11.62632 -11.14952 -10.98020 -10.90257 -10.79947 -10.38190 -10.25271 -10.17062 -10.07263 -9.88208 -9.73804 -9.42499 -8.67018 -8.49128 -8.04617 -6.88500 -5.74553 -3.08879 0.76494 1.18429 1.54275 1.94099 2.44691 2.49195 3.02764 3.40181 3.44310 3.45573 4.15699 4.27361 4.36520 4.48671 4.67117 4.72378 4.85222 4.97708 4.99265 5.07822 5.22825 5.28932 5.34486 5.36480 5.43610 5.48630 5.55125 5.55392 5.61058 5.65904 5.79409 5.93452 6.10888 6.20432 6.40842 6.48505 6.51281 6.61676 6.83979 7.13272 7.38867 7.50566 7.54421 7.77695 8.07732 8.21389 9.18026 9.77677 10.42065 11.37053 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.022439 B = 0.002499 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.532537 B =11203.340989 C =11538.212518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C -0.210 4.210 3 S 0.003 5.997 4 C 0.488 3.512 5 O -0.471 6.471 6 N -0.515 5.515 7 C 0.082 3.918 8 C 0.498 3.502 9 O -0.527 6.527 10 N -0.596 5.596 11 C 0.070 3.930 12 C 0.123 3.877 13 H 0.106 0.894 14 C -0.152 4.152 15 C 0.180 3.820 16 N -0.602 5.602 17 C -0.230 4.230 18 H 0.078 0.922 19 C -0.007 4.007 20 N -0.923 5.923 21 Si 0.914 3.086 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.285 1.285 25 C 0.132 3.868 26 C 0.106 3.894 27 C -0.101 4.101 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.122 0.878 32 H 0.123 0.877 33 H 0.062 0.938 34 H 0.084 0.916 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.049 0.951 39 H 0.046 0.954 40 H 0.253 0.747 41 H 0.023 0.977 42 H 0.041 0.959 43 H 0.089 0.911 44 H 0.091 0.909 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.851 6.012 -19.625 26.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.330 4.330 3 S 0.247 5.753 4 C 0.170 3.830 5 O -0.350 6.350 6 N -0.235 5.235 7 C -0.047 4.047 8 C 0.283 3.717 9 O -0.403 6.403 10 N -0.329 5.329 11 C -0.073 4.073 12 C 0.020 3.980 13 H 0.124 0.876 14 C -0.191 4.191 15 C 0.055 3.945 16 N -0.329 5.329 17 C -0.358 4.358 18 H 0.096 0.904 19 C -0.203 4.203 20 N -0.570 5.570 21 Si 0.744 3.256 22 H -0.211 1.211 23 H -0.215 1.215 24 H -0.211 1.211 25 C 0.004 3.996 26 C -0.004 4.004 27 C -0.160 4.160 28 H 0.094 0.906 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.140 0.860 32 H 0.141 0.859 33 H 0.080 0.920 34 H 0.103 0.897 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.040 0.960 42 H 0.059 0.941 43 H 0.107 0.893 44 H 0.110 0.890 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -16.484 7.810 -18.930 26.288 hybrid contribution 1.302 -1.468 0.673 2.075 sum -15.181 6.341 -18.257 24.577 Atomic orbital electron populations 1.20100 0.85710 1.03105 1.02986 1.23419 0.99627 0.92064 1.17861 1.85026 0.97831 1.11138 1.81301 1.21488 0.94653 0.84581 0.82233 1.90976 1.19274 1.71666 1.53056 1.45564 1.05766 1.07011 1.65136 1.21799 0.94761 0.91345 0.96836 1.20604 0.79960 0.80217 0.90938 1.90745 1.51952 1.51988 1.45579 1.47792 1.41990 1.35114 1.07969 1.21879 0.97974 0.99001 0.88445 1.22510 0.98021 0.96850 0.80669 0.87584 1.23249 1.00662 0.94409 1.00754 1.21139 0.86857 0.92837 0.93684 1.44381 1.26693 1.30085 1.31772 1.19015 0.99968 1.10817 1.05980 0.90416 1.24807 0.98819 0.97665 0.99026 1.69942 1.35214 1.17613 1.34251 0.86166 0.81707 0.77107 0.80592 1.21089 1.21544 1.21126 1.21744 0.91427 0.94592 0.91823 1.19174 0.81811 0.98187 1.01220 1.20801 1.01836 0.88999 1.04339 0.90573 0.90935 0.90327 0.86022 0.85860 0.91950 0.89705 0.91591 0.91918 0.91988 0.93297 0.93581 0.93634 0.95983 0.94062 0.89265 0.89021 0.90857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.34 10.10 36.00 0.36 0.03 16 2 C -0.21 -1.94 6.72 -36.22 -0.24 -2.18 16 3 S 0.00 0.04 22.97 -107.50 -2.47 -2.43 16 4 C 0.49 7.15 8.27 53.82 0.45 7.59 16 5 O -0.47 -8.36 17.55 5.07 0.09 -8.27 16 6 N -0.51 -6.22 2.09 -118.57 -0.25 -6.47 16 7 C 0.08 0.86 4.30 -5.20 -0.02 0.83 16 8 C 0.50 7.32 7.74 -10.99 -0.09 7.24 16 9 O -0.53 -10.09 15.81 5.56 0.09 -10.00 16 10 N -0.60 -8.50 2.91 -171.49 -0.50 -9.00 16 11 C 0.07 0.70 8.99 59.85 0.54 1.24 16 12 C 0.12 2.25 3.45 -65.78 -0.23 2.02 16 13 H 0.11 2.22 7.01 -51.93 -0.36 1.86 16 14 C -0.15 -2.73 6.51 -24.89 -0.16 -2.90 16 15 C 0.18 4.29 5.37 -3.06 -0.02 4.28 16 16 N -0.60 -15.44 3.40 -170.04 -0.58 -16.02 16 17 C -0.23 -6.46 10.28 -15.06 -0.15 -6.61 16 18 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 19 C -0.01 -0.20 5.49 -17.43 -0.10 -0.29 16 20 N -0.92 -27.00 10.31 55.49 0.57 -26.43 16 21 Si 0.91 22.25 29.55 -169.99 -5.02 17.22 16 22 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 25 C 0.13 2.77 6.81 -2.51 -0.02 2.75 16 26 C 0.11 1.03 6.59 -82.51 -0.54 0.49 16 27 C -0.10 -0.63 9.47 36.01 0.34 -0.29 16 28 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.08 0.28 6.77 -51.93 -0.35 -0.08 16 31 H 0.12 0.77 5.39 -51.93 -0.28 0.49 16 32 H 0.12 1.21 7.77 -51.93 -0.40 0.81 16 33 H 0.06 0.61 8.08 -51.93 -0.42 0.19 16 34 H 0.08 0.89 6.21 -51.93 -0.32 0.57 16 35 H 0.07 0.41 6.44 -51.93 -0.33 0.07 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.06 0.98 6.20 -51.93 -0.32 0.66 16 38 H 0.05 1.31 7.38 -51.93 -0.38 0.92 16 39 H 0.05 1.20 7.50 -51.93 -0.39 0.81 16 40 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 41 H 0.02 0.44 7.10 -51.93 -0.37 0.08 16 42 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.09 0.34 6.69 -51.93 -0.35 -0.01 16 45 H 0.07 0.36 6.19 -51.93 -0.32 0.04 16 LS Contribution 371.58 15.07 5.60 5.60 Total: -1.00 -36.27 371.58 -8.61 -44.88 By element: Atomic # 1 Polarization: 2.97 SS G_CDS: -6.27 Total: -3.30 kcal Atomic # 6 Polarization: 14.08 SS G_CDS: 0.12 Total: 14.20 kcal Atomic # 7 Polarization: -57.16 SS G_CDS: -0.75 Total: -57.92 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: 0.18 Total: -18.27 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.22 kcal Atomic # 16 Polarization: 0.04 SS G_CDS: -2.47 Total: -2.43 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -36.27 -8.61 -44.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033684762.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.033 kcal (2) G-P(sol) polarization free energy of solvation -36.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds