Wall clock time and date at job start Tue Mar 31 2020 22:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 S 1.77238 * 127.33941 * 2 1 4 4 C 1.72210 * 94.84481 * 179.97438 * 3 2 1 5 5 O 1.21832 * 127.05437 * 180.26347 * 4 3 2 6 6 N 1.34244 * 105.88702 * 0.02562 * 4 3 2 7 7 C 1.46501 * 121.38050 * 179.97438 * 6 4 3 8 8 C 1.50694 * 109.47050 * 90.02275 * 7 6 4 9 9 O 1.21274 * 120.00183 * 0.02562 * 8 7 6 10 10 N 1.34783 * 119.99724 * 180.02562 * 8 7 6 11 11 C 1.46497 * 120.00131 * 0.02562 * 10 8 7 12 12 C 1.46498 * 119.99912 * 180.02562 * 10 8 7 13 13 H 1.09000 * 110.88905 * 359.30110 * 12 10 8 14 14 C 1.55160 * 111.00310 * 123.17819 * 12 10 8 15 15 C 1.54324 * 102.94240 * 153.57772 * 14 12 10 16 16 N 1.47021 * 107.26879 * 337.80848 * 15 14 12 17 17 C 1.36948 * 125.64601 * 178.97592 * 16 15 14 18 18 H 1.07998 * 119.99478 * 179.97438 * 17 16 15 19 19 C 1.38804 * 120.00013 * 359.97413 * 17 16 15 20 20 N 1.31621 * 119.99947 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99971 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47183 * 60.00138 * 21 19 17 23 23 H 1.48496 * 109.47111 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.46714 * 299.99914 * 21 19 17 25 25 C 1.47463 * 108.72503 * 358.97326 * 16 15 14 26 26 C 1.32565 * 127.34446 * 179.97438 * 2 1 3 27 27 C 1.50699 * 121.63933 * 0.06389 * 26 2 1 28 28 H 1.08993 * 109.47558 * 270.05583 * 1 2 3 29 29 H 1.09006 * 109.47131 * 30.05141 * 1 2 3 30 30 H 1.09000 * 109.47072 * 150.05289 * 1 2 3 31 31 H 1.08996 * 109.46788 * 210.02891 * 7 6 4 32 32 H 1.09006 * 109.46964 * 330.02520 * 7 6 4 33 33 H 1.08996 * 109.47023 * 90.00039 * 11 10 8 34 34 H 1.08999 * 109.47294 * 210.00060 * 11 10 8 35 35 H 1.09000 * 109.47383 * 330.00042 * 11 10 8 36 36 H 1.09004 * 110.71823 * 271.93685 * 14 12 10 37 37 H 1.08992 * 110.72183 * 35.03677 * 14 12 10 38 38 H 1.08997 * 109.88288 * 97.22543 * 15 14 12 39 39 H 1.08999 * 109.88266 * 218.23908 * 15 14 12 40 40 H 0.97005 * 119.99762 * 179.97438 * 20 19 17 41 41 H 1.08999 * 110.35467 * 265.25451 * 25 16 15 42 42 H 1.09004 * 110.40407 * 142.91615 * 25 16 15 43 43 H 1.08997 * 109.47413 * 269.97656 * 27 26 2 44 44 H 1.09001 * 109.47347 * 29.98310 * 27 26 2 45 45 H 1.09004 * 109.46947 * 149.97872 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 16 2.5819 1.4091 0.0000 4 6 4.0344 0.4840 0.0008 5 8 5.1760 0.9097 0.0055 6 7 3.6507 -0.8024 0.0004 7 6 4.6312 -1.8910 0.0003 8 6 4.9668 -2.2649 1.4210 9 8 4.4386 -1.6801 2.3429 10 7 5.8539 -3.2492 1.6672 11 6 6.4924 -3.9552 0.5536 12 6 6.1797 -3.6132 3.0484 13 1 5.6322 -2.9887 3.7543 14 6 5.9037 -5.1180 3.3068 15 6 6.8809 -5.4569 4.4522 16 7 7.9554 -4.4539 4.4202 17 6 9.0133 -4.3897 5.2876 18 1 9.7537 -3.6109 5.1794 19 6 9.1339 -5.3256 6.3055 20 7 8.2313 -6.2744 6.4376 21 14 10.5765 -5.2376 7.4890 22 1 10.5543 -3.9344 8.2006 23 1 10.4754 -6.3427 8.4758 24 1 11.8471 -5.3662 6.7311 25 6 7.7059 -3.5283 3.2997 26 6 2.3111 -1.0539 0.0005 27 6 1.7706 -2.4606 -0.0003 28 1 -0.3634 0.0010 1.0276 29 1 -0.3634 0.8896 -0.5147 30 1 -0.3633 -0.8905 -0.5130 31 1 4.2134 -2.7562 -0.5142 32 1 5.5360 -1.5649 -0.5129 33 1 7.4140 -3.4422 0.2788 34 1 6.7217 -4.9773 0.8551 35 1 5.8167 -3.9715 -0.3015 36 1 4.8717 -5.2722 3.6221 37 1 6.1266 -5.7090 2.4186 38 1 6.3605 -5.4122 5.4089 39 1 7.2963 -6.4534 4.3024 40 1 8.3158 -6.9286 7.1488 41 1 8.2546 -3.8486 2.4140 42 1 7.9890 -2.5125 3.5757 43 1 1.6398 -2.8002 1.0271 44 1 0.8098 -2.4805 -0.5148 45 1 2.4714 -3.1188 -0.5140 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033684762.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:52 Heat of formation + Delta-G solvation = -21.445883 kcal Electronic energy + Delta-G solvation = -27779.429901 eV Core-core repulsion = 23924.343023 eV Total energy + Delta-G solvation = -3855.086878 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.39905 -40.86075 -39.03945 -38.74370 -36.38605 -34.66317 -34.08618 -31.61637 -30.91437 -30.23119 -29.07621 -27.82792 -26.61641 -25.86396 -24.71338 -22.24901 -22.04891 -20.93022 -20.19542 -19.26796 -18.98844 -18.86426 -18.04412 -17.44131 -16.79831 -16.71887 -16.55200 -16.24599 -15.87966 -15.19458 -14.98987 -14.86079 -14.58686 -14.45441 -14.32156 -14.13185 -14.06761 -13.72422 -13.66304 -13.44095 -13.39848 -13.12686 -12.96313 -12.75965 -12.73302 -12.47404 -12.36168 -12.12311 -12.09635 -11.86515 -11.84634 -11.52664 -11.29245 -11.20075 -10.75141 -10.39832 -9.76849 -8.95614 -8.90154 -7.89791 -5.26592 -0.17882 0.34320 0.74755 1.00595 1.36321 1.43437 1.46843 1.52960 1.59358 1.94200 2.46946 3.27300 3.29072 3.50391 3.62016 3.69421 3.85508 3.91881 3.96591 4.12877 4.14134 4.25010 4.26260 4.51846 4.57349 4.59595 4.65012 4.66681 4.75166 4.77032 4.88938 4.89407 5.00808 5.04433 5.07991 5.11557 5.37791 5.40679 5.45906 5.59490 5.65738 5.69492 6.13132 6.15063 6.29048 6.94979 7.05215 7.70147 8.33377 9.19948 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.022439 B = 0.002499 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.532537 B =11203.340989 C =11538.212518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C -0.201 4.201 3 S -0.010 6.010 4 C 0.467 3.533 5 O -0.521 6.521 6 N -0.515 5.515 7 C 0.086 3.914 8 C 0.494 3.506 9 O -0.580 6.580 10 N -0.592 5.592 11 C 0.059 3.941 12 C 0.140 3.860 13 H 0.073 0.927 14 C -0.128 4.128 15 C 0.187 3.813 16 N -0.625 5.625 17 C -0.249 4.249 18 H 0.078 0.922 19 C -0.061 4.061 20 N -0.948 5.948 21 Si 0.980 3.020 22 H -0.281 1.281 23 H -0.290 1.290 24 H -0.274 1.274 25 C 0.131 3.869 26 C 0.089 3.911 27 C -0.098 4.098 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.109 0.891 31 H 0.175 0.825 32 H 0.133 0.867 33 H 0.066 0.934 34 H 0.085 0.915 35 H 0.115 0.885 36 H 0.077 0.923 37 H 0.095 0.905 38 H 0.008 0.992 39 H 0.020 0.980 40 H 0.249 0.751 41 H 0.045 0.955 42 H 0.023 0.977 43 H 0.078 0.922 44 H 0.122 0.878 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.435 4.900 -22.313 29.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.320 4.320 3 S 0.234 5.766 4 C 0.151 3.849 5 O -0.405 6.405 6 N -0.234 5.234 7 C -0.042 4.042 8 C 0.282 3.718 9 O -0.459 6.459 10 N -0.324 5.324 11 C -0.082 4.082 12 C 0.034 3.966 13 H 0.091 0.909 14 C -0.167 4.167 15 C 0.062 3.938 16 N -0.352 5.352 17 C -0.378 4.378 18 H 0.096 0.904 19 C -0.255 4.255 20 N -0.596 5.596 21 Si 0.808 3.192 22 H -0.208 1.208 23 H -0.216 1.216 24 H -0.200 1.200 25 C 0.005 3.995 26 C -0.020 4.020 27 C -0.157 4.157 28 H 0.097 0.903 29 H 0.099 0.901 30 H 0.127 0.873 31 H 0.192 0.808 32 H 0.151 0.849 33 H 0.085 0.915 34 H 0.103 0.897 35 H 0.134 0.866 36 H 0.095 0.905 37 H 0.114 0.886 38 H 0.026 0.974 39 H 0.038 0.962 40 H 0.058 0.942 41 H 0.062 0.938 42 H 0.041 0.959 43 H 0.097 0.903 44 H 0.141 0.859 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -18.100 6.682 -21.681 29.023 hybrid contribution 1.718 -1.069 1.492 2.514 sum -16.382 5.613 -20.190 26.599 Atomic orbital electron populations 1.20300 0.82879 1.05021 1.03757 1.24037 1.01003 0.90122 1.16848 1.85011 0.97912 1.12927 1.80769 1.21877 0.94690 0.85838 0.82525 1.90928 1.21082 1.72981 1.55536 1.45679 1.07096 1.06474 1.64173 1.22011 0.95572 0.92742 0.93876 1.21376 0.78954 0.79169 0.92288 1.90728 1.53916 1.53655 1.47618 1.47776 1.42029 1.35471 1.07108 1.22263 0.99325 0.98299 0.88289 1.21917 0.95284 0.96394 0.82980 0.90914 1.23036 0.99654 0.94389 0.99650 1.20903 0.87183 0.91489 0.94256 1.44658 1.26540 1.31402 1.32590 1.19373 1.00835 1.10801 1.06782 0.90413 1.25649 1.01538 0.97543 1.00743 1.70155 1.36751 1.18124 1.34617 0.85141 0.78896 0.76881 0.78328 1.20757 1.21596 1.19974 1.21854 0.93838 0.92733 0.91088 1.19837 0.80740 1.00172 1.01240 1.20961 1.03748 0.86635 1.04357 0.90255 0.90073 0.87252 0.80815 0.84919 0.91500 0.89682 0.86631 0.90477 0.88639 0.97356 0.96201 0.94151 0.93766 0.95889 0.90301 0.85939 0.88887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.47 10.10 71.23 0.72 0.24 16 2 C -0.20 -3.26 6.72 24.53 0.16 -3.10 16 3 S -0.01 -0.24 22.97 -56.49 -1.30 -1.53 16 4 C 0.47 13.77 8.27 129.87 1.07 14.84 16 5 O -0.52 -19.24 17.55 -4.77 -0.08 -19.32 16 6 N -0.51 -11.59 2.09 -647.50 -1.35 -12.95 16 7 C 0.09 1.55 4.30 85.63 0.37 1.91 16 8 C 0.49 13.78 7.74 87.65 0.68 14.46 16 9 O -0.58 -22.38 15.81 -3.01 -0.05 -22.43 16 10 N -0.59 -15.64 2.91 -814.86 -2.37 -18.01 16 11 C 0.06 0.94 8.99 127.77 1.15 2.09 16 12 C 0.14 5.07 3.45 46.38 0.16 5.23 16 13 H 0.07 3.16 7.01 -2.39 -0.02 3.14 16 14 C -0.13 -4.49 6.51 31.78 0.21 -4.28 16 15 C 0.19 9.17 5.37 86.73 0.47 9.64 16 16 N -0.62 -32.87 3.40 -691.90 -2.35 -35.22 16 17 C -0.25 -14.37 10.28 84.03 0.86 -13.50 16 18 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 19 C -0.06 -3.55 5.49 84.86 0.47 -3.08 16 20 N -0.95 -57.18 10.31 21.65 0.22 -56.96 16 21 Si 0.98 46.48 29.55 68.60 2.03 48.51 16 22 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 23 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 24 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 25 C 0.13 5.58 6.81 86.85 0.59 6.17 16 26 C 0.09 1.48 6.59 40.71 0.27 1.75 16 27 C -0.10 -0.80 9.47 71.24 0.67 -0.12 16 28 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.08 0.53 8.14 -2.38 -0.02 0.51 16 30 H 0.11 0.23 6.77 -2.39 -0.02 0.22 16 31 H 0.17 1.20 5.39 -2.39 -0.01 1.19 16 32 H 0.13 2.23 7.77 -2.38 -0.02 2.21 16 33 H 0.07 1.06 8.08 -2.39 -0.02 1.04 16 34 H 0.08 1.41 6.21 -2.39 -0.01 1.40 16 35 H 0.12 0.72 6.44 -2.39 -0.02 0.71 16 36 H 0.08 2.50 8.14 -2.38 -0.02 2.48 16 37 H 0.10 2.73 6.20 -2.39 -0.01 2.71 16 38 H 0.01 0.46 7.38 -2.39 -0.02 0.44 16 39 H 0.02 1.06 7.50 -2.39 -0.02 1.04 16 40 H 0.25 14.58 8.31 -92.70 -0.77 13.81 16 41 H 0.04 1.71 7.10 -2.39 -0.02 1.69 16 42 H 0.02 1.04 8.14 -2.38 -0.02 1.02 16 43 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.12 0.23 6.69 -2.39 -0.02 0.21 16 45 H 0.09 0.37 6.19 -2.38 -0.01 0.36 16 Total: -1.00 -86.38 371.58 3.62 -82.77 By element: Atomic # 1 Polarization: 1.87 SS G_CDS: 1.02 Total: 2.89 kcal Atomic # 6 Polarization: 24.40 SS G_CDS: 7.85 Total: 32.25 kcal Atomic # 7 Polarization: -117.28 SS G_CDS: -5.85 Total: -123.13 kcal Atomic # 8 Polarization: -41.62 SS G_CDS: -0.13 Total: -41.75 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.51 kcal Atomic # 16 Polarization: -0.24 SS G_CDS: -1.30 Total: -1.53 kcal Total: -86.38 3.62 -82.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033684762.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.320 kcal (2) G-P(sol) polarization free energy of solvation -86.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds