Wall clock time and date at job start Tue Mar 31 2020 23:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.47418 * 2 1 4 4 N 1.29428 * 124.79759 * 90.02519 * 3 2 1 5 5 C 1.30946 * 117.35729 * 179.97438 * 4 3 2 6 6 C 1.50702 * 122.90512 * 180.02562 * 5 4 3 7 7 C 1.35660 * 114.19384 * 0.26138 * 5 4 3 8 8 C 1.46687 * 126.13183 * 179.73231 * 7 5 4 9 9 O 1.21684 * 119.99685 * 359.97438 * 8 7 5 10 10 N 1.34773 * 119.99728 * 180.02562 * 8 7 5 11 11 C 1.46501 * 119.99694 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.47317 * 180.02562 * 11 10 8 13 13 H 1.09004 * 109.50778 * 305.00073 * 12 11 10 14 14 C 1.53286 * 109.51365 * 184.90082 * 12 11 10 15 15 N 1.47156 * 108.38594 * 187.77259 * 14 12 11 16 16 C 1.36933 * 120.98227 * 230.55736 * 15 14 12 17 17 H 1.08006 * 120.00030 * 26.23982 * 16 15 14 18 18 C 1.38813 * 119.99979 * 206.23879 * 16 15 14 19 19 N 1.31612 * 119.99979 * 16.90409 * 18 16 15 20 20 Si 1.86800 * 120.00043 * 196.90756 * 18 16 15 21 21 H 1.48496 * 109.47574 * 59.99674 * 20 18 16 22 22 H 1.48500 * 109.47417 * 179.97438 * 20 18 16 23 23 H 1.48508 * 109.46947 * 299.99759 * 20 18 16 24 24 C 1.47150 * 118.03324 * 50.53374 * 15 14 12 25 25 C 1.53294 * 108.38217 * 309.46474 * 24 15 14 26 26 O 1.42954 * 109.51202 * 65.09823 * 12 11 10 27 27 S 1.70945 * 124.80511 * 270.00399 * 3 2 1 28 28 H 1.09004 * 109.46978 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.46749 * 299.99648 * 1 2 3 30 30 H 1.08997 * 109.47070 * 59.99641 * 1 2 3 31 31 H 1.09002 * 109.46967 * 239.99793 * 2 1 3 32 32 H 1.09003 * 109.47486 * 120.00460 * 2 1 3 33 33 H 1.09000 * 109.47325 * 90.01112 * 6 5 4 34 34 H 1.09008 * 109.46750 * 330.01909 * 6 5 4 35 35 H 1.08997 * 109.47323 * 210.02199 * 6 5 4 36 36 H 0.97000 * 120.00603 * 0.02562 * 10 8 7 37 37 H 1.09004 * 109.47517 * 299.99670 * 11 10 8 38 38 H 1.08997 * 109.47530 * 60.00048 * 11 10 8 39 39 H 1.08998 * 109.68518 * 307.49290 * 14 12 11 40 40 H 1.09002 * 109.68505 * 68.00815 * 14 12 11 41 41 H 0.97001 * 120.00220 * 180.02562 * 19 18 16 42 42 H 1.08999 * 109.68456 * 69.19297 * 24 15 14 43 43 H 1.09003 * 109.67699 * 189.70670 * 24 15 14 44 44 H 1.09008 * 109.50890 * 172.22784 * 25 24 15 45 45 H 1.09005 * 109.51491 * 292.37708 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2791 2.1170 1.0628 5 6 2.7124 3.3410 0.8933 6 6 3.0387 4.2605 2.0418 7 6 2.8374 3.7116 -0.4057 8 6 3.2925 5.0184 -0.8924 9 8 3.5994 5.8895 -0.1001 10 7 3.3698 5.2545 -2.2171 11 6 3.8239 6.5598 -2.7031 12 6 3.8188 6.5643 -4.2332 13 1 4.4177 5.7313 -4.6016 14 6 4.4086 7.8840 -4.7433 15 7 4.2213 7.9431 -6.2017 16 6 5.2679 8.2334 -7.0356 17 1 6.2798 8.0125 -6.7292 18 6 5.0284 8.8114 -8.2747 19 7 3.8684 9.3820 -8.5215 20 14 6.3525 8.7793 -9.5919 21 1 6.6969 7.3711 -9.9135 22 1 5.8513 9.4573 -10.8143 23 1 7.5620 9.4836 -9.0953 24 6 2.8762 7.6805 -6.7374 25 6 2.3611 6.3706 -6.1301 26 8 2.4763 6.4333 -4.7065 27 16 2.3576 2.3408 -1.4036 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 4.0862 4.1393 2.3180 34 1 2.4071 4.0138 2.8954 35 1 2.8587 5.2931 1.7431 36 1 3.1241 4.5605 -2.8486 37 1 3.1542 7.3374 -2.3357 38 1 4.8346 6.7504 -2.3423 39 1 3.8943 8.7221 -4.2729 40 1 5.4718 7.9266 -4.5071 41 1 3.7008 9.7856 -9.3875 42 1 2.2076 8.4981 -6.4678 43 1 2.9247 7.5887 -7.8225 44 1 1.3159 6.2282 -6.4049 45 1 2.9541 5.5369 -6.5062 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035540526.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:32 Heat of formation + Delta-G solvation = -21.540231 kcal Electronic energy + Delta-G solvation = -26798.686953 eV Core-core repulsion = 22943.595984 eV Total energy + Delta-G solvation = -3855.090969 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.59308 -39.39854 -38.41910 -35.06547 -34.62986 -34.34480 -31.72926 -31.17008 -30.76665 -28.74594 -27.36142 -25.88004 -25.37545 -23.24797 -22.41206 -22.19653 -21.44137 -20.07066 -19.37035 -18.18088 -17.23671 -16.81206 -16.16431 -15.98682 -15.54844 -15.20918 -15.02582 -14.70143 -14.47406 -14.36908 -14.14720 -13.83691 -13.71890 -13.29621 -13.24853 -13.12544 -12.79828 -12.69458 -12.43381 -12.26373 -12.10284 -11.64689 -11.63319 -11.54337 -11.16089 -10.88165 -10.77673 -10.46158 -10.32969 -10.23559 -10.02631 -9.91797 -9.77862 -9.70517 -9.17725 -9.12547 -8.92728 -8.58386 -6.80574 -5.88514 -3.32407 -0.01878 0.88544 1.29895 2.19952 3.01096 3.06395 3.32315 3.38328 3.39034 3.62117 4.16882 4.39156 4.41289 4.65392 4.67758 4.71719 4.88580 5.07013 5.10903 5.28873 5.34229 5.41564 5.43817 5.46032 5.50556 5.57664 5.68020 5.72800 5.73686 5.78000 5.96048 6.08028 6.13935 6.23432 6.31626 6.40817 6.43462 6.70024 7.05129 7.28848 7.41995 7.47038 7.66103 7.79515 8.04804 8.28848 9.06837 9.69471 10.26176 11.19654 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020648 B = 0.002291 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.764136 B =12220.749955 C =12913.164533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.051 4.051 3 C 0.064 3.936 4 N -0.477 5.477 5 C 0.149 3.851 6 C -0.090 4.090 7 C -0.298 4.298 8 C 0.595 3.405 9 O -0.526 6.526 10 N -0.714 5.714 11 C 0.131 3.869 12 C 0.064 3.936 13 H 0.059 0.941 14 C 0.122 3.878 15 N -0.594 5.594 16 C -0.257 4.257 17 H 0.069 0.931 18 C 0.003 3.997 19 N -0.902 5.902 20 Si 0.906 3.094 21 H -0.283 1.283 22 H -0.289 1.289 23 H -0.281 1.281 24 C 0.139 3.861 25 C 0.039 3.961 26 O -0.390 6.390 27 S 0.163 5.837 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.089 0.911 32 H 0.098 0.902 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.102 0.898 36 H 0.400 0.600 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.031 0.969 40 H 0.065 0.935 41 H 0.256 0.744 42 H 0.029 0.971 43 H 0.095 0.905 44 H 0.082 0.918 45 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.616 -18.462 15.465 24.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.091 4.091 3 C -0.211 4.211 4 N -0.192 5.192 5 C 0.011 3.989 6 C -0.149 4.149 7 C -0.421 4.421 8 C 0.380 3.620 9 O -0.405 6.405 10 N -0.364 5.364 11 C 0.008 3.992 12 C 0.004 3.996 13 H 0.077 0.923 14 C -0.005 4.005 15 N -0.317 5.317 16 C -0.386 4.386 17 H 0.086 0.914 18 C -0.196 4.196 19 N -0.546 5.546 20 Si 0.736 3.264 21 H -0.210 1.210 22 H -0.215 1.215 23 H -0.208 1.208 24 C 0.014 3.986 25 C -0.038 4.038 26 O -0.309 6.309 27 S 0.421 5.579 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.108 0.892 32 H 0.116 0.884 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.120 0.880 36 H 0.235 0.765 37 H 0.098 0.902 38 H 0.103 0.897 39 H 0.049 0.951 40 H 0.083 0.917 41 H 0.066 0.934 42 H 0.047 0.953 43 H 0.113 0.887 44 H 0.100 0.900 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -5.740 -18.180 15.334 24.466 hybrid contribution 0.879 0.245 -0.693 1.146 sum -4.861 -17.934 14.641 23.656 Atomic orbital electron populations 1.21788 0.93057 1.02872 1.02958 1.20324 0.97052 0.87093 1.04678 1.27435 1.00639 1.01842 0.91229 1.66089 1.15966 1.05882 1.31277 1.20681 0.94195 0.90344 0.93702 1.20676 1.02245 0.98504 0.93428 1.25490 1.18885 1.00549 0.97222 1.16643 0.77815 0.84896 0.82604 1.90783 1.49726 1.45139 1.54843 1.45862 1.67578 1.16973 1.06003 1.21500 1.00786 0.84200 0.92756 1.22818 0.85238 1.00205 0.91346 0.92321 1.21431 0.98897 0.93198 0.86975 1.44058 1.06912 1.81543 0.99225 1.19152 0.87465 1.34745 0.97275 0.91358 1.25051 0.97273 0.97451 0.99820 1.70019 1.23483 1.38283 1.22864 0.86314 0.81162 0.77757 0.81201 1.20974 1.21528 1.20757 1.21449 0.85513 0.91695 0.99990 1.23339 1.00276 1.00007 0.80217 1.87788 1.25820 1.94692 1.22644 1.83965 1.58555 1.04113 1.11281 0.91074 0.91803 0.92138 0.89239 0.88411 0.90086 0.90822 0.87998 0.76523 0.90230 0.89698 0.95132 0.91692 0.93397 0.95325 0.88718 0.89982 0.94080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.90 37.16 0.37 -0.42 16 2 C -0.05 -0.30 6.51 -27.88 -0.18 -0.48 16 3 C 0.06 0.60 6.64 -13.29 -0.09 0.52 16 4 N -0.48 -5.56 10.50 -7.70 -0.08 -5.64 16 5 C 0.15 1.85 6.79 -83.89 -0.57 1.28 16 6 C -0.09 -0.99 9.70 36.01 0.35 -0.64 16 7 C -0.30 -3.75 6.48 -37.09 -0.24 -3.99 16 8 C 0.60 8.57 7.78 -12.85 -0.10 8.47 16 9 O -0.53 -8.73 14.26 5.20 0.07 -8.66 16 10 N -0.71 -9.77 5.50 -61.61 -0.34 -10.11 16 11 C 0.13 1.95 5.34 -4.04 -0.02 1.92 16 12 C 0.06 1.09 2.81 -26.58 -0.07 1.02 16 13 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 14 C 0.12 2.49 6.02 -3.54 -0.02 2.47 16 15 N -0.59 -14.59 3.05 -171.83 -0.52 -15.12 16 16 C -0.26 -6.88 9.65 -15.06 -0.15 -7.03 16 17 H 0.07 1.78 7.88 -52.48 -0.41 1.36 16 18 C 0.00 0.08 4.95 -17.43 -0.09 -0.01 16 19 N -0.90 -25.64 11.14 55.49 0.62 -25.02 16 20 Si 0.91 21.16 29.59 -169.99 -5.03 16.13 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 C 0.14 3.25 5.45 -3.53 -0.02 3.23 16 25 C 0.04 0.74 6.98 37.31 0.26 1.00 16 26 O -0.39 -7.16 10.33 -35.23 -0.36 -7.53 16 27 S 0.16 1.56 22.31 -107.50 -2.40 -0.84 16 28 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.07 0.71 8.14 -51.92 -0.42 0.28 16 35 H 0.10 1.27 5.99 -51.93 -0.31 0.95 16 36 H 0.40 4.98 7.66 -40.82 -0.31 4.67 16 37 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.06 1.25 7.96 -51.93 -0.41 0.84 16 41 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 42 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.09 2.42 6.14 -51.93 -0.32 2.11 16 44 H 0.08 1.35 8.14 -51.92 -0.42 0.92 16 45 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 380.93 15.07 5.74 5.74 Total: -1.00 -31.59 380.93 -9.70 -41.28 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -6.82 Total: 2.41 kcal Atomic # 6 Polarization: 7.91 SS G_CDS: -0.57 Total: 7.34 kcal Atomic # 7 Polarization: -55.56 SS G_CDS: -0.33 Total: -55.89 kcal Atomic # 8 Polarization: -15.89 SS G_CDS: -0.29 Total: -16.18 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.03 Total: 16.13 kcal Atomic # 16 Polarization: 1.56 SS G_CDS: -2.40 Total: -0.84 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.59 -9.70 -41.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035540526.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.743 kcal (2) G-P(sol) polarization free energy of solvation -31.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds