Wall clock time and date at job start Tue Mar 31 2020 23:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.47418 * 2 1 4 4 N 1.29428 * 124.79759 * 90.02519 * 3 2 1 5 5 C 1.30946 * 117.35729 * 179.97438 * 4 3 2 6 6 C 1.50702 * 122.90512 * 180.02562 * 5 4 3 7 7 C 1.35660 * 114.19384 * 0.26138 * 5 4 3 8 8 C 1.46687 * 126.13183 * 179.73231 * 7 5 4 9 9 O 1.21684 * 119.99685 * 359.97438 * 8 7 5 10 10 N 1.34773 * 119.99728 * 180.02562 * 8 7 5 11 11 C 1.46501 * 119.99694 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.47317 * 180.02562 * 11 10 8 13 13 H 1.09004 * 109.50778 * 305.00073 * 12 11 10 14 14 C 1.53286 * 109.51365 * 184.90082 * 12 11 10 15 15 N 1.47156 * 108.38594 * 187.77259 * 14 12 11 16 16 C 1.36933 * 120.98227 * 230.55736 * 15 14 12 17 17 H 1.08006 * 120.00030 * 26.23982 * 16 15 14 18 18 C 1.38813 * 119.99979 * 206.23879 * 16 15 14 19 19 N 1.31612 * 119.99979 * 16.90409 * 18 16 15 20 20 Si 1.86800 * 120.00043 * 196.90756 * 18 16 15 21 21 H 1.48496 * 109.47574 * 59.99674 * 20 18 16 22 22 H 1.48500 * 109.47417 * 179.97438 * 20 18 16 23 23 H 1.48508 * 109.46947 * 299.99759 * 20 18 16 24 24 C 1.47150 * 118.03324 * 50.53374 * 15 14 12 25 25 C 1.53294 * 108.38217 * 309.46474 * 24 15 14 26 26 O 1.42954 * 109.51202 * 65.09823 * 12 11 10 27 27 S 1.70945 * 124.80511 * 270.00399 * 3 2 1 28 28 H 1.09004 * 109.46978 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.46749 * 299.99648 * 1 2 3 30 30 H 1.08997 * 109.47070 * 59.99641 * 1 2 3 31 31 H 1.09002 * 109.46967 * 239.99793 * 2 1 3 32 32 H 1.09003 * 109.47486 * 120.00460 * 2 1 3 33 33 H 1.09000 * 109.47325 * 90.01112 * 6 5 4 34 34 H 1.09008 * 109.46750 * 330.01909 * 6 5 4 35 35 H 1.08997 * 109.47323 * 210.02199 * 6 5 4 36 36 H 0.97000 * 120.00603 * 0.02562 * 10 8 7 37 37 H 1.09004 * 109.47517 * 299.99670 * 11 10 8 38 38 H 1.08997 * 109.47530 * 60.00048 * 11 10 8 39 39 H 1.08998 * 109.68518 * 307.49290 * 14 12 11 40 40 H 1.09002 * 109.68505 * 68.00815 * 14 12 11 41 41 H 0.97001 * 120.00220 * 180.02562 * 19 18 16 42 42 H 1.08999 * 109.68456 * 69.19297 * 24 15 14 43 43 H 1.09003 * 109.67699 * 189.70670 * 24 15 14 44 44 H 1.09008 * 109.50890 * 172.22784 * 25 24 15 45 45 H 1.09005 * 109.51491 * 292.37708 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2791 2.1170 1.0628 5 6 2.7124 3.3410 0.8933 6 6 3.0387 4.2605 2.0418 7 6 2.8374 3.7116 -0.4057 8 6 3.2925 5.0184 -0.8924 9 8 3.5994 5.8895 -0.1001 10 7 3.3698 5.2545 -2.2171 11 6 3.8239 6.5598 -2.7031 12 6 3.8188 6.5643 -4.2332 13 1 4.4177 5.7313 -4.6016 14 6 4.4086 7.8840 -4.7433 15 7 4.2213 7.9431 -6.2017 16 6 5.2679 8.2334 -7.0356 17 1 6.2798 8.0125 -6.7292 18 6 5.0284 8.8114 -8.2747 19 7 3.8684 9.3820 -8.5215 20 14 6.3525 8.7793 -9.5919 21 1 6.6969 7.3711 -9.9135 22 1 5.8513 9.4573 -10.8143 23 1 7.5620 9.4836 -9.0953 24 6 2.8762 7.6805 -6.7374 25 6 2.3611 6.3706 -6.1301 26 8 2.4763 6.4333 -4.7065 27 16 2.3576 2.3408 -1.4036 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 4.0862 4.1393 2.3180 34 1 2.4071 4.0138 2.8954 35 1 2.8587 5.2931 1.7431 36 1 3.1241 4.5605 -2.8486 37 1 3.1542 7.3374 -2.3357 38 1 4.8346 6.7504 -2.3423 39 1 3.8943 8.7221 -4.2729 40 1 5.4718 7.9266 -4.5071 41 1 3.7008 9.7856 -9.3875 42 1 2.2076 8.4981 -6.4678 43 1 2.9247 7.5887 -7.8225 44 1 1.3159 6.2282 -6.4049 45 1 2.9541 5.5369 -6.5062 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035540526.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:31 Heat of formation + Delta-G solvation = -42.911936 kcal Electronic energy + Delta-G solvation = -26799.613700 eV Core-core repulsion = 22943.595984 eV Total energy + Delta-G solvation = -3856.017716 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.52597 -40.56314 -39.83741 -36.56531 -35.88634 -35.24554 -33.41868 -32.54075 -31.84781 -29.90605 -28.92731 -27.02003 -26.41649 -24.99995 -23.75662 -22.89420 -22.58567 -21.59057 -20.53390 -19.04365 -18.87460 -18.07686 -17.54276 -17.08996 -16.87093 -16.58398 -16.19037 -16.00484 -15.56411 -15.49104 -15.44921 -15.03078 -14.92000 -14.65873 -14.53200 -14.42184 -13.94590 -13.72425 -13.54038 -13.22816 -13.01052 -12.93673 -12.67307 -12.57829 -12.54505 -12.40600 -12.19838 -12.11756 -12.07659 -11.88661 -11.38377 -11.21743 -10.83055 -10.77751 -10.64935 -10.55072 -10.25370 -9.77984 -8.76966 -7.92041 -5.39481 -0.86202 0.09763 0.48398 1.30536 1.47147 1.48819 1.55965 1.91957 2.01960 2.47533 2.74368 2.91898 3.23098 3.46300 3.67297 3.77004 3.92059 3.99523 4.05602 4.21850 4.23055 4.28268 4.45884 4.49749 4.54963 4.59040 4.67526 4.70111 4.72476 4.79241 4.85298 4.88074 4.99185 5.02959 5.05536 5.16915 5.22774 5.31131 5.35158 5.54535 5.60382 6.23282 6.26730 6.31782 6.54579 6.96435 7.05198 7.73197 8.26764 9.13963 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020648 B = 0.002291 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.764136 B =12220.749955 C =12913.164533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.053 4.053 3 C 0.071 3.929 4 N -0.500 5.500 5 C 0.144 3.856 6 C -0.087 4.087 7 C -0.331 4.331 8 C 0.596 3.404 9 O -0.555 6.555 10 N -0.708 5.708 11 C 0.141 3.859 12 C 0.078 3.922 13 H 0.070 0.930 14 C 0.117 3.883 15 N -0.613 5.613 16 C -0.267 4.267 17 H 0.073 0.927 18 C -0.050 4.050 19 N -0.936 5.936 20 Si 0.972 3.028 21 H -0.275 1.275 22 H -0.295 1.295 23 H -0.276 1.276 24 C 0.143 3.857 25 C 0.054 3.946 26 O -0.391 6.391 27 S 0.203 5.797 28 H 0.092 0.908 29 H 0.049 0.951 30 H 0.058 0.942 31 H 0.114 0.886 32 H 0.106 0.894 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.408 0.592 37 H 0.068 0.932 38 H 0.095 0.905 39 H 0.019 0.981 40 H 0.074 0.926 41 H 0.252 0.748 42 H -0.001 1.001 43 H 0.068 0.932 44 H 0.109 0.891 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.450 -21.260 15.695 26.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.093 4.093 3 C -0.204 4.204 4 N -0.215 5.215 5 C 0.005 3.995 6 C -0.146 4.146 7 C -0.455 4.455 8 C 0.383 3.617 9 O -0.436 6.436 10 N -0.359 5.359 11 C 0.018 3.982 12 C 0.018 3.982 13 H 0.088 0.912 14 C -0.009 4.009 15 N -0.337 5.337 16 C -0.397 4.397 17 H 0.091 0.909 18 C -0.246 4.246 19 N -0.581 5.581 20 Si 0.799 3.201 21 H -0.201 1.201 22 H -0.221 1.221 23 H -0.202 1.202 24 C 0.017 3.983 25 C -0.024 4.024 26 O -0.310 6.310 27 S 0.462 5.538 28 H 0.111 0.889 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.132 0.868 32 H 0.124 0.876 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.244 0.756 37 H 0.087 0.913 38 H 0.113 0.887 39 H 0.037 0.963 40 H 0.092 0.908 41 H 0.061 0.939 42 H 0.017 0.983 43 H 0.087 0.913 44 H 0.127 0.873 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.576 -21.013 15.573 26.742 hybrid contribution 0.791 1.070 -0.703 1.505 sum -4.784 -19.943 14.870 25.332 Atomic orbital electron populations 1.21793 0.92393 1.04087 1.02212 1.20579 0.97436 0.85025 1.06291 1.28157 0.98514 1.02877 0.90817 1.66162 1.17307 1.05789 1.32245 1.20897 0.93744 0.90868 0.93978 1.20635 1.02820 0.97459 0.93690 1.25360 1.20935 1.01008 0.98178 1.16852 0.77204 0.85360 0.82330 1.90765 1.51044 1.46337 1.55462 1.45727 1.67525 1.16578 1.06102 1.21295 1.01243 0.84671 0.91037 1.22661 0.84591 0.98417 0.92507 0.91225 1.21585 0.99754 0.94733 0.84831 1.44338 1.06801 1.81769 1.00813 1.19515 0.88318 1.34028 0.97844 0.90914 1.25834 0.99342 0.97545 1.01834 1.70181 1.25411 1.39554 1.22984 0.85281 0.78649 0.77913 0.78226 1.20058 1.22072 1.20172 1.21318 0.84905 0.93262 0.98812 1.23176 1.01852 0.97284 0.80079 1.87804 1.26522 1.94431 1.22246 1.83745 1.57634 1.02213 1.10186 0.88924 0.93188 0.92250 0.86782 0.87622 0.89577 0.89615 0.89608 0.75644 0.91320 0.88650 0.96292 0.90769 0.93909 0.98325 0.91339 0.87269 0.92962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.90 71.98 0.71 -0.45 16 2 C -0.05 -0.47 6.51 29.85 0.19 -0.28 16 3 C 0.07 1.19 6.64 88.46 0.59 1.77 16 4 N -0.50 -10.94 10.50 -178.29 -1.87 -12.82 16 5 C 0.14 3.47 6.79 42.09 0.29 3.76 16 6 C -0.09 -1.92 9.70 71.24 0.69 -1.23 16 7 C -0.33 -8.02 6.48 23.88 0.15 -7.86 16 8 C 0.60 16.81 7.78 86.45 0.67 17.48 16 9 O -0.56 -18.51 14.26 -4.30 -0.06 -18.58 16 10 N -0.71 -18.46 5.50 -467.07 -2.57 -21.03 16 11 C 0.14 4.05 5.34 86.38 0.46 4.52 16 12 C 0.08 2.55 2.81 30.69 0.09 2.64 16 13 H 0.07 2.18 8.14 -2.38 -0.02 2.17 16 14 C 0.12 4.75 6.02 86.35 0.52 5.27 16 15 N -0.61 -30.29 3.05 -697.55 -2.13 -32.42 16 16 C -0.27 -14.33 9.65 84.03 0.81 -13.52 16 17 H 0.07 3.75 7.88 -2.91 -0.02 3.72 16 18 C -0.05 -2.73 4.95 84.86 0.42 -2.31 16 19 N -0.94 -54.41 11.14 21.65 0.24 -54.17 16 20 Si 0.97 43.65 29.59 68.60 2.03 45.68 16 21 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 22 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 23 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 24 C 0.14 6.76 5.45 86.35 0.47 7.23 16 25 C 0.05 1.93 6.98 72.08 0.50 2.44 16 26 O -0.39 -13.72 10.33 -148.98 -1.54 -15.26 16 27 S 0.20 3.45 22.31 -56.49 -1.26 2.19 16 28 H 0.09 0.37 8.14 -2.38 -0.02 0.35 16 29 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 35 H 0.09 2.18 5.99 -2.39 -0.01 2.17 16 36 H 0.41 9.32 7.66 -92.71 -0.71 8.61 16 37 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 38 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 39 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.07 2.82 7.96 -2.39 -0.02 2.80 16 41 H 0.25 14.20 8.31 -92.71 -0.77 13.42 16 42 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 43 H 0.07 3.59 6.14 -2.39 -0.01 3.58 16 44 H 0.11 3.35 8.14 -2.38 -0.02 3.33 16 45 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 Total: -1.00 -68.86 380.93 -0.29 -69.15 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: 0.30 Total: 17.80 kcal Atomic # 6 Polarization: 12.88 SS G_CDS: 6.57 Total: 19.45 kcal Atomic # 7 Polarization: -114.10 SS G_CDS: -6.33 Total: -120.43 kcal Atomic # 8 Polarization: -32.23 SS G_CDS: -1.60 Total: -33.83 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Atomic # 16 Polarization: 3.45 SS G_CDS: -1.26 Total: 2.19 kcal Total: -68.86 -0.29 -69.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035540526.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.236 kcal (2) G-P(sol) polarization free energy of solvation -68.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds