Wall clock time and date at job start Tue Mar 31 2020 22:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.32563 * 121.64639 * 2 1 4 4 S 1.77228 * 105.32056 * 180.26299 * 3 2 1 5 5 C 1.72213 * 94.84401 * 359.67422 * 4 3 2 6 6 O 1.21830 * 127.05412 * 180.02562 * 5 4 3 7 7 N 1.34236 * 105.88792 * 0.32319 * 5 4 3 8 8 C 1.46502 * 121.38270 * 179.77240 * 7 5 4 9 9 C 1.50703 * 109.47162 * 269.97909 * 8 7 5 10 10 O 1.21286 * 119.99934 * 359.97438 * 9 8 7 11 11 N 1.34776 * 119.99899 * 180.02562 * 9 8 7 12 12 C 1.46921 * 120.63264 * 359.97438 * 11 9 8 13 13 C 1.53194 * 108.77642 * 126.36941 * 12 11 9 14 14 C 1.53038 * 109.31313 * 54.63752 * 13 12 11 15 15 H 1.08993 * 109.46155 * 178.62957 * 14 13 12 16 16 N 1.46502 * 109.46228 * 58.65189 * 14 13 12 17 17 C 1.36940 * 119.99604 * 85.00119 * 16 14 13 18 18 H 1.07998 * 119.99742 * 0.02562 * 17 16 14 19 19 C 1.38812 * 119.99546 * 180.02562 * 17 16 14 20 20 N 1.31616 * 119.99636 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 120.00326 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.47139 * 89.99838 * 21 19 17 23 23 H 1.48495 * 109.47398 * 210.00052 * 21 19 17 24 24 H 1.48505 * 109.47177 * 330.00253 * 21 19 17 25 25 C 1.53045 * 109.53459 * 298.63383 * 14 13 12 26 26 H 1.08993 * 109.50143 * 301.41303 * 25 14 13 27 27 C 1.53004 * 109.49676 * 181.34676 * 25 14 13 28 28 C 1.46927 * 120.62841 * 179.71853 * 11 9 8 29 29 H 1.09001 * 109.47474 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.47098 * 119.97822 * 1 2 3 31 31 H 1.09007 * 109.47140 * 239.97418 * 1 2 3 32 32 H 1.08002 * 127.33647 * 359.97438 * 3 2 1 33 33 H 1.09000 * 109.47223 * 29.97357 * 8 7 5 34 34 H 1.08994 * 109.47122 * 149.97628 * 8 7 5 35 35 H 1.08996 * 109.58816 * 246.16136 * 12 11 9 36 36 H 1.09003 * 109.58799 * 6.43974 * 12 11 9 37 37 H 1.09001 * 109.49831 * 174.58569 * 13 12 11 38 38 H 1.08998 * 109.49433 * 294.65193 * 13 12 11 39 39 H 0.96996 * 119.99916 * 265.00265 * 16 14 13 40 40 H 0.97004 * 120.00074 * 180.02562 * 20 19 17 41 41 H 1.08999 * 109.46634 * 60.00467 * 27 25 14 42 42 H 1.08996 * 109.47266 * 179.97438 * 27 25 14 43 43 H 1.09001 * 109.47428 * 300.00564 * 27 25 14 44 44 H 1.09001 * 109.58726 * 353.41857 * 28 11 9 45 45 H 1.08999 * 109.58654 * 113.84170 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2025 1.1285 0.0000 4 16 3.9033 0.6303 -0.0078 5 6 3.5606 -1.0573 -0.0008 6 8 4.3673 -1.9703 -0.0020 7 7 2.2222 -1.1605 -0.0004 8 6 1.5576 -2.4661 0.0001 9 6 1.3289 -2.9139 -1.4206 10 8 1.6854 -2.2113 -2.3427 11 7 0.7272 -4.0946 -1.6664 12 6 0.2893 -4.9563 -0.5600 13 6 -1.1928 -5.2923 -0.7536 14 6 -1.3965 -5.9010 -2.1428 15 1 -2.4462 -6.1635 -2.2739 16 7 -0.5723 -7.1051 -2.2738 17 6 -1.0423 -8.3091 -1.8213 18 1 -2.0207 -8.3710 -1.3683 19 6 -0.2611 -9.4498 -1.9449 20 7 -0.7130 -10.6071 -1.5105 21 14 1.4309 -9.3428 -2.7292 22 1 2.4454 -9.0628 -1.6814 23 1 1.7501 -10.6308 -3.3956 24 1 1.4425 -8.2494 -3.7340 25 6 -0.9880 -4.8848 -3.2118 26 1 -1.5838 -3.9791 -3.0993 27 6 -1.2236 -5.4819 -4.6006 28 6 0.4918 -4.5418 -3.0460 29 1 -0.3634 1.0276 0.0005 30 1 -0.3633 -0.5135 -0.8902 31 1 -0.3634 -0.5143 0.8898 32 1 1.8152 2.1367 -0.0004 33 1 2.1863 -3.1936 0.5134 34 1 0.6001 -2.3862 0.5145 35 1 0.8752 -5.8753 -0.5586 36 1 0.4270 -4.4338 0.3867 37 1 -1.5059 -6.0080 0.0066 38 1 -1.7867 -4.3828 -0.6637 39 1 0.3063 -7.0494 -2.6810 40 1 -0.1670 -11.4042 -1.5965 41 1 -2.2794 -5.7263 -4.7166 42 1 -0.9329 -4.7577 -5.3616 43 1 -0.6267 -6.3870 -4.7131 44 1 0.7608 -3.7450 -3.7395 45 1 1.0946 -5.4265 -3.2513 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036294349.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:13 Heat of formation + Delta-G solvation = -15.458773 kcal Electronic energy + Delta-G solvation = -28464.051248 eV Core-core repulsion = 24609.223990 eV Total energy + Delta-G solvation = -3854.827257 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -41.49087 -39.96786 -37.97886 -37.63194 -34.59534 -33.21858 -32.63218 -31.63543 -30.50391 -29.85614 -27.57798 -26.14178 -25.12303 -23.81962 -23.26098 -21.82016 -21.17803 -19.77051 -18.51023 -18.26244 -18.04161 -17.62083 -17.13258 -16.10918 -15.73848 -15.44435 -15.11578 -14.81519 -14.58855 -14.43719 -14.01261 -13.95806 -13.84658 -13.75756 -13.61974 -13.32121 -12.81902 -12.65831 -12.48122 -12.39151 -11.85488 -11.82851 -11.69278 -11.54744 -11.38612 -11.09257 -11.05117 -10.74860 -10.62773 -10.33717 -10.28370 -10.25911 -9.97482 -9.63380 -9.55187 -9.03717 -8.54826 -8.16147 -7.37046 -5.85840 -3.21887 0.74353 1.17944 1.55592 1.91745 2.41362 2.45067 3.00527 3.29899 3.32951 3.40419 4.16431 4.24994 4.42659 4.50460 4.69843 4.78201 4.91115 5.01647 5.05362 5.09068 5.10681 5.21562 5.25216 5.35530 5.37882 5.50379 5.51476 5.63624 5.74198 5.81138 5.81509 5.96661 6.10308 6.15423 6.27301 6.34201 6.41279 6.44863 6.54928 6.65147 6.74748 7.09818 7.35328 7.89552 8.00669 8.33125 9.10759 9.83533 10.02602 11.32347 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018124 B = 0.003160 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.516590 B = 8858.053722 C = 9401.704236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.113 3.887 3 C -0.241 4.241 4 S 0.002 5.998 5 C 0.487 3.513 6 O -0.470 6.470 7 N -0.517 5.517 8 C 0.082 3.918 9 C 0.500 3.500 10 O -0.537 6.537 11 N -0.598 5.598 12 C 0.108 3.892 13 C -0.149 4.149 14 C 0.185 3.815 15 H 0.062 0.938 16 N -0.744 5.744 17 C -0.244 4.244 18 H 0.091 0.909 19 C 0.009 3.991 20 N -0.932 5.932 21 Si 0.877 3.123 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.278 1.278 25 C -0.111 4.111 26 H 0.071 0.929 27 C -0.139 4.139 28 C 0.118 3.882 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.192 0.808 33 H 0.124 0.876 34 H 0.123 0.877 35 H 0.085 0.915 36 H 0.071 0.929 37 H 0.082 0.918 38 H 0.053 0.947 39 H 0.360 0.640 40 H 0.260 0.740 41 H 0.059 0.941 42 H 0.046 0.954 43 H 0.065 0.935 44 H 0.087 0.913 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.234 23.975 4.423 24.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.002 3.998 3 C -0.379 4.379 4 S 0.244 5.756 5 C 0.169 3.831 6 O -0.349 6.349 7 N -0.237 5.237 8 C -0.047 4.047 9 C 0.285 3.715 10 O -0.414 6.414 11 N -0.331 5.331 12 C -0.014 4.014 13 C -0.190 4.190 14 C 0.075 3.925 15 H 0.080 0.920 16 N -0.388 5.388 17 C -0.373 4.373 18 H 0.109 0.891 19 C -0.187 4.187 20 N -0.579 5.579 21 Si 0.707 3.293 22 H -0.211 1.211 23 H -0.216 1.216 24 H -0.204 1.204 25 C -0.131 4.131 26 H 0.089 0.911 27 C -0.197 4.197 28 C -0.004 4.004 29 H 0.111 0.889 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.209 0.791 33 H 0.142 0.858 34 H 0.141 0.859 35 H 0.103 0.897 36 H 0.090 0.910 37 H 0.101 0.899 38 H 0.072 0.928 39 H 0.194 0.806 40 H 0.070 0.930 41 H 0.078 0.922 42 H 0.065 0.935 43 H 0.084 0.916 44 H 0.106 0.894 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.527 24.197 4.018 24.576 hybrid contribution 0.049 -1.012 -0.498 1.129 sum 1.577 23.186 3.520 23.504 Atomic orbital electron populations 1.20780 0.86668 1.04991 1.03628 1.19383 0.95801 0.84731 0.99855 1.24841 0.93150 1.01136 1.18736 1.85068 1.08571 1.00841 1.81077 1.21561 0.83538 0.95831 0.82194 1.90982 1.48574 1.42455 1.52885 1.45635 1.06314 1.06682 1.65071 1.21776 1.01082 0.85050 0.96798 1.20586 0.78373 0.81526 0.90990 1.90718 1.51011 1.54086 1.45605 1.48126 1.57844 1.18666 1.08446 1.21844 0.97525 0.94726 0.87346 1.22510 0.94057 1.00336 1.02102 1.20178 0.95793 0.86064 0.90503 0.92044 1.42855 1.17981 1.04513 1.73409 1.19033 1.02042 0.83783 1.32476 0.89121 1.24635 0.97861 0.95389 1.00847 1.69684 1.37614 0.98657 1.51942 0.86691 0.86057 0.76985 0.79546 1.21061 1.21638 1.20439 1.21683 0.95295 0.99015 0.97064 0.91057 1.21679 1.02443 1.00930 0.94602 1.21603 0.96683 1.00125 0.82001 0.88946 0.89960 0.90059 0.79110 0.85767 0.85904 0.89710 0.91046 0.89912 0.92810 0.80576 0.92992 0.92205 0.93520 0.91584 0.89433 0.91333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.58 9.00 36.01 0.32 -0.25 16 2 C 0.11 1.02 6.59 -82.51 -0.54 0.48 16 3 C -0.24 -1.97 11.18 28.82 0.32 -1.65 16 4 S 0.00 0.02 22.97 -107.50 -2.47 -2.45 16 5 C 0.49 6.98 8.27 53.81 0.45 7.43 16 6 O -0.47 -8.33 17.55 5.07 0.09 -8.24 16 7 N -0.52 -6.10 2.09 -118.57 -0.25 -6.35 16 8 C 0.08 0.89 4.09 -5.19 -0.02 0.87 16 9 C 0.50 7.10 7.77 -10.98 -0.09 7.02 16 10 O -0.54 -9.45 15.84 5.55 0.09 -9.36 16 11 N -0.60 -8.42 2.98 -173.01 -0.52 -8.93 16 12 C 0.11 1.42 6.09 -3.71 -0.02 1.40 16 13 C -0.15 -2.06 5.78 -26.61 -0.15 -2.21 16 14 C 0.18 3.04 2.53 -67.89 -0.17 2.86 16 15 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 16 N -0.74 -15.50 3.45 -53.39 -0.18 -15.69 16 17 C -0.24 -6.25 10.41 -15.06 -0.16 -6.41 16 18 H 0.09 2.51 8.06 -52.49 -0.42 2.08 16 19 C 0.01 0.24 5.50 -17.43 -0.10 0.15 16 20 N -0.93 -28.04 13.97 55.49 0.78 -27.26 16 21 Si 0.88 21.37 27.74 -169.99 -4.71 16.65 16 22 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 24 H -0.28 -6.39 6.52 56.52 0.37 -6.03 16 25 C -0.11 -1.58 2.66 -90.70 -0.24 -1.82 16 26 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 27 C -0.14 -1.99 9.06 37.16 0.34 -1.65 16 28 C 0.12 1.79 5.40 -3.91 -0.02 1.77 16 29 H 0.09 0.32 7.99 -51.93 -0.41 -0.09 16 30 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.34 7.63 -51.92 -0.40 -0.06 16 32 H 0.19 0.91 8.06 -52.49 -0.42 0.49 16 33 H 0.12 1.35 7.60 -51.93 -0.39 0.96 16 34 H 0.12 0.87 6.37 -51.93 -0.33 0.54 16 35 H 0.08 1.35 7.74 -51.93 -0.40 0.95 16 36 H 0.07 0.70 5.93 -51.93 -0.31 0.39 16 37 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.36 7.66 3.80 -40.82 -0.16 7.51 16 40 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 41 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.07 1.10 7.54 -51.93 -0.39 0.71 16 44 H 0.09 1.35 7.01 -51.93 -0.36 0.99 16 45 H 0.07 1.15 6.64 -51.93 -0.34 0.81 16 LS Contribution 371.22 15.07 5.59 5.59 Total: -1.00 -34.02 371.22 -8.14 -42.16 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -6.47 Total: 5.90 kcal Atomic # 6 Polarization: 8.07 SS G_CDS: -0.08 Total: 7.98 kcal Atomic # 7 Polarization: -58.07 SS G_CDS: -0.17 Total: -58.24 kcal Atomic # 8 Polarization: -17.78 SS G_CDS: 0.18 Total: -17.60 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.71 Total: 16.65 kcal Atomic # 16 Polarization: 0.02 SS G_CDS: -2.47 Total: -2.45 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.02 -8.14 -42.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036294349.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.697 kcal (2) G-P(sol) polarization free energy of solvation -34.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds