Wall clock time and date at job start Tue Mar 31 2020 22:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.32563 * 121.64639 * 2 1 4 4 S 1.77228 * 105.32056 * 180.26299 * 3 2 1 5 5 C 1.72213 * 94.84401 * 359.67422 * 4 3 2 6 6 O 1.21830 * 127.05412 * 180.02562 * 5 4 3 7 7 N 1.34236 * 105.88792 * 0.32319 * 5 4 3 8 8 C 1.46502 * 121.38270 * 179.77240 * 7 5 4 9 9 C 1.50703 * 109.47162 * 269.97909 * 8 7 5 10 10 O 1.21286 * 119.99934 * 359.97438 * 9 8 7 11 11 N 1.34776 * 119.99899 * 180.02562 * 9 8 7 12 12 C 1.46921 * 120.63264 * 359.97438 * 11 9 8 13 13 C 1.53194 * 108.77642 * 126.36941 * 12 11 9 14 14 C 1.53038 * 109.31313 * 54.63752 * 13 12 11 15 15 H 1.08993 * 109.46155 * 178.62957 * 14 13 12 16 16 N 1.46502 * 109.46228 * 58.65189 * 14 13 12 17 17 C 1.36940 * 119.99604 * 85.00119 * 16 14 13 18 18 H 1.07998 * 119.99742 * 0.02562 * 17 16 14 19 19 C 1.38812 * 119.99546 * 180.02562 * 17 16 14 20 20 N 1.31616 * 119.99636 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 120.00326 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.47139 * 89.99838 * 21 19 17 23 23 H 1.48495 * 109.47398 * 210.00052 * 21 19 17 24 24 H 1.48505 * 109.47177 * 330.00253 * 21 19 17 25 25 C 1.53045 * 109.53459 * 298.63383 * 14 13 12 26 26 H 1.08993 * 109.50143 * 301.41303 * 25 14 13 27 27 C 1.53004 * 109.49676 * 181.34676 * 25 14 13 28 28 C 1.46927 * 120.62841 * 179.71853 * 11 9 8 29 29 H 1.09001 * 109.47474 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.47098 * 119.97822 * 1 2 3 31 31 H 1.09007 * 109.47140 * 239.97418 * 1 2 3 32 32 H 1.08002 * 127.33647 * 359.97438 * 3 2 1 33 33 H 1.09000 * 109.47223 * 29.97357 * 8 7 5 34 34 H 1.08994 * 109.47122 * 149.97628 * 8 7 5 35 35 H 1.08996 * 109.58816 * 246.16136 * 12 11 9 36 36 H 1.09003 * 109.58799 * 6.43974 * 12 11 9 37 37 H 1.09001 * 109.49831 * 174.58569 * 13 12 11 38 38 H 1.08998 * 109.49433 * 294.65193 * 13 12 11 39 39 H 0.96996 * 119.99916 * 265.00265 * 16 14 13 40 40 H 0.97004 * 120.00074 * 180.02562 * 20 19 17 41 41 H 1.08999 * 109.46634 * 60.00467 * 27 25 14 42 42 H 1.08996 * 109.47266 * 179.97438 * 27 25 14 43 43 H 1.09001 * 109.47428 * 300.00564 * 27 25 14 44 44 H 1.09001 * 109.58726 * 353.41857 * 28 11 9 45 45 H 1.08999 * 109.58654 * 113.84170 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2025 1.1285 0.0000 4 16 3.9033 0.6303 -0.0078 5 6 3.5606 -1.0573 -0.0008 6 8 4.3673 -1.9703 -0.0020 7 7 2.2222 -1.1605 -0.0004 8 6 1.5576 -2.4661 0.0001 9 6 1.3289 -2.9139 -1.4206 10 8 1.6854 -2.2113 -2.3427 11 7 0.7272 -4.0946 -1.6664 12 6 0.2893 -4.9563 -0.5600 13 6 -1.1928 -5.2923 -0.7536 14 6 -1.3965 -5.9010 -2.1428 15 1 -2.4462 -6.1635 -2.2739 16 7 -0.5723 -7.1051 -2.2738 17 6 -1.0423 -8.3091 -1.8213 18 1 -2.0207 -8.3710 -1.3683 19 6 -0.2611 -9.4498 -1.9449 20 7 -0.7130 -10.6071 -1.5105 21 14 1.4309 -9.3428 -2.7292 22 1 2.4454 -9.0628 -1.6814 23 1 1.7501 -10.6308 -3.3956 24 1 1.4425 -8.2494 -3.7340 25 6 -0.9880 -4.8848 -3.2118 26 1 -1.5838 -3.9791 -3.0993 27 6 -1.2236 -5.4819 -4.6006 28 6 0.4918 -4.5418 -3.0460 29 1 -0.3634 1.0276 0.0005 30 1 -0.3633 -0.5135 -0.8902 31 1 -0.3634 -0.5143 0.8898 32 1 1.8152 2.1367 -0.0004 33 1 2.1863 -3.1936 0.5134 34 1 0.6001 -2.3862 0.5145 35 1 0.8752 -5.8753 -0.5586 36 1 0.4270 -4.4338 0.3867 37 1 -1.5059 -6.0080 0.0066 38 1 -1.7867 -4.3828 -0.6637 39 1 0.3063 -7.0494 -2.6810 40 1 -0.1670 -11.4042 -1.5965 41 1 -2.2794 -5.7263 -4.7166 42 1 -0.9329 -4.7577 -5.3616 43 1 -0.6267 -6.3870 -4.7131 44 1 0.7608 -3.7450 -3.7395 45 1 1.0946 -5.4265 -3.2513 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036294349.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:12 Heat of formation + Delta-G solvation = -38.034809 kcal Electronic energy + Delta-G solvation = -28465.030218 eV Core-core repulsion = 24609.223990 eV Total energy + Delta-G solvation = -3855.806228 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.40926 -41.09245 -39.20866 -38.63994 -36.04139 -34.66862 -33.54179 -33.13218 -31.50790 -31.22233 -28.41904 -27.27990 -26.32772 -25.02975 -24.68010 -23.06603 -22.08467 -20.86025 -19.91535 -19.69424 -19.07436 -18.73454 -18.14379 -17.16646 -16.88439 -16.56738 -16.50408 -16.07493 -15.89480 -15.46916 -15.28007 -15.09851 -14.88001 -14.58082 -14.54041 -14.48865 -14.33287 -13.74311 -13.44388 -13.34708 -13.17975 -13.04903 -12.97209 -12.74514 -12.59226 -12.48606 -12.12040 -12.08137 -12.00769 -11.96412 -11.70055 -11.35956 -11.28843 -11.21273 -10.93408 -10.50419 -9.76200 -9.25041 -8.98521 -8.00248 -5.30067 -0.16699 0.37964 0.82109 1.04363 1.33455 1.34624 1.35054 1.41329 1.59763 1.96962 2.46360 3.23750 3.32931 3.52688 3.60325 3.70242 3.78176 3.94009 3.96673 4.01317 4.19925 4.23288 4.30418 4.42581 4.54959 4.59095 4.65468 4.69477 4.70971 4.76696 4.91911 4.94260 4.98100 5.10441 5.13739 5.23616 5.26472 5.28084 5.41700 5.57355 5.66078 5.84019 6.14879 6.24078 6.27566 6.90681 7.11414 7.89230 8.05512 9.21657 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018124 B = 0.003160 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.516590 B = 8858.053722 C = 9401.704236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.095 3.905 3 C -0.223 4.223 4 S -0.002 6.002 5 C 0.463 3.537 6 O -0.525 6.525 7 N -0.517 5.517 8 C 0.082 3.918 9 C 0.500 3.500 10 O -0.574 6.574 11 N -0.596 5.596 12 C 0.109 3.891 13 C -0.140 4.140 14 C 0.174 3.826 15 H 0.054 0.946 16 N -0.745 5.745 17 C -0.207 4.207 18 H 0.067 0.933 19 C -0.057 4.057 20 N -0.983 5.983 21 Si 0.933 3.067 22 H -0.285 1.285 23 H -0.301 1.301 24 H -0.260 1.260 25 C -0.097 4.097 26 H 0.099 0.901 27 C -0.138 4.138 28 C 0.119 3.881 29 H 0.119 0.881 30 H 0.071 0.929 31 H 0.102 0.898 32 H 0.231 0.769 33 H 0.123 0.877 34 H 0.169 0.831 35 H 0.054 0.946 36 H 0.113 0.887 37 H 0.069 0.931 38 H 0.092 0.908 39 H 0.360 0.640 40 H 0.254 0.746 41 H 0.063 0.937 42 H 0.066 0.934 43 H 0.037 0.963 44 H 0.085 0.915 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.631 27.788 5.047 28.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.014 4.014 3 C -0.360 4.360 4 S 0.241 5.759 5 C 0.146 3.854 6 O -0.409 6.409 7 N -0.236 5.236 8 C -0.047 4.047 9 C 0.288 3.712 10 O -0.453 6.453 11 N -0.328 5.328 12 C -0.013 4.013 13 C -0.180 4.180 14 C 0.066 3.934 15 H 0.072 0.928 16 N -0.389 5.389 17 C -0.338 4.338 18 H 0.085 0.915 19 C -0.249 4.249 20 N -0.634 5.634 21 Si 0.762 3.238 22 H -0.212 1.212 23 H -0.228 1.228 24 H -0.185 1.185 25 C -0.117 4.117 26 H 0.117 0.883 27 C -0.195 4.195 28 C -0.004 4.004 29 H 0.138 0.862 30 H 0.090 0.910 31 H 0.121 0.879 32 H 0.248 0.752 33 H 0.141 0.859 34 H 0.187 0.813 35 H 0.072 0.928 36 H 0.131 0.869 37 H 0.088 0.912 38 H 0.110 0.890 39 H 0.193 0.807 40 H 0.063 0.937 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.056 0.944 44 H 0.103 0.897 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.081 28.112 4.642 28.492 hybrid contribution 0.380 -2.016 -0.700 2.168 sum 0.462 26.096 3.942 26.396 Atomic orbital electron populations 1.20925 0.83714 1.07046 1.03993 1.20042 0.97537 0.83816 1.00010 1.25449 0.90537 1.02733 1.17268 1.85063 1.11593 0.98870 1.80360 1.22035 0.84277 0.96542 0.82504 1.90935 1.50110 1.44358 1.55518 1.45748 1.05755 1.07917 1.64223 1.21940 1.03141 0.84917 0.94672 1.21123 0.77169 0.80902 0.92023 1.90701 1.52335 1.55173 1.47128 1.48140 1.57809 1.18776 1.08091 1.21879 0.96448 0.94072 0.88894 1.22369 0.95020 1.01412 0.99230 1.20482 0.94604 0.85104 0.93178 0.92786 1.42879 1.18421 1.04538 1.73055 1.19017 1.00370 0.85232 1.29217 0.91491 1.25228 1.01304 0.95362 1.02984 1.69834 1.39115 0.99406 1.55091 0.85756 0.82260 0.76748 0.78997 1.21200 1.22846 1.18522 1.21586 0.94961 0.99113 0.96015 0.88322 1.21665 1.02193 1.00261 0.95428 1.21489 0.96828 0.99084 0.82961 0.86241 0.91042 0.87939 0.75227 0.85915 0.81335 0.92793 0.86861 0.91237 0.88954 0.80664 0.93670 0.91767 0.91533 0.94371 0.89671 0.93602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.62 9.00 71.24 0.64 0.02 16 2 C 0.09 1.37 6.59 40.71 0.27 1.64 16 3 C -0.22 -2.83 11.18 66.67 0.75 -2.08 16 4 S 0.00 -0.04 22.97 -56.49 -1.30 -1.34 16 5 C 0.46 13.09 8.27 129.88 1.07 14.17 16 6 O -0.53 -19.22 17.55 -4.76 -0.08 -19.30 16 7 N -0.52 -11.08 2.09 -647.50 -1.35 -12.44 16 8 C 0.08 1.55 4.09 85.63 0.35 1.90 16 9 C 0.50 13.14 7.77 87.66 0.68 13.82 16 10 O -0.57 -19.41 15.84 -3.05 -0.05 -19.46 16 11 N -0.60 -15.45 2.98 -819.66 -2.44 -17.89 16 12 C 0.11 2.60 6.09 86.36 0.53 3.12 16 13 C -0.14 -3.44 5.78 30.67 0.18 -3.26 16 14 C 0.17 5.41 2.53 45.02 0.11 5.53 16 15 H 0.05 1.79 8.08 -2.39 -0.02 1.77 16 16 N -0.75 -30.73 3.45 -322.81 -1.11 -31.84 16 17 C -0.21 -10.75 10.41 84.03 0.87 -9.88 16 18 H 0.07 3.78 8.06 -2.91 -0.02 3.75 16 19 C -0.06 -3.24 5.50 84.86 0.47 -2.77 16 20 N -0.98 -61.10 13.97 21.65 0.30 -60.80 16 21 Si 0.93 45.20 27.74 68.60 1.90 47.10 16 22 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 23 H -0.30 -15.07 7.11 99.48 0.71 -14.36 16 24 H -0.26 -11.61 6.52 99.48 0.65 -10.97 16 25 C -0.10 -2.53 2.66 -10.84 -0.03 -2.56 16 26 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 27 C -0.14 -3.70 9.06 71.98 0.65 -3.05 16 28 C 0.12 3.43 5.40 86.23 0.47 3.90 16 29 H 0.12 0.13 7.99 -2.39 -0.02 0.11 16 30 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.10 0.24 7.63 -2.38 -0.02 0.22 16 32 H 0.23 0.96 8.06 -2.91 -0.02 0.93 16 33 H 0.12 2.43 7.60 -2.39 -0.02 2.41 16 34 H 0.17 1.53 6.37 -2.39 -0.02 1.51 16 35 H 0.05 1.66 7.74 -2.39 -0.02 1.64 16 36 H 0.11 1.75 5.93 -2.39 -0.01 1.74 16 37 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.36 15.14 3.80 -92.71 -0.35 14.79 16 40 H 0.25 15.32 8.31 -92.71 -0.77 14.55 16 41 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.04 1.23 7.54 -2.39 -0.02 1.21 16 44 H 0.08 2.52 7.01 -2.39 -0.02 2.50 16 45 H 0.05 1.53 6.64 -2.39 -0.02 1.51 16 Total: -1.00 -79.26 371.22 3.48 -75.79 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: 0.60 Total: 19.69 kcal Atomic # 6 Polarization: 13.47 SS G_CDS: 7.01 Total: 20.48 kcal Atomic # 7 Polarization: -118.36 SS G_CDS: -4.60 Total: -122.96 kcal Atomic # 8 Polarization: -38.63 SS G_CDS: -0.13 Total: -38.76 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 1.90 Total: 47.10 kcal Atomic # 16 Polarization: -0.04 SS G_CDS: -1.30 Total: -1.34 kcal Total: -79.26 3.48 -75.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036294349.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.751 kcal (2) G-P(sol) polarization free energy of solvation -79.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds