Wall clock time and date at job start Tue Mar 31 2020 23:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50700 * 109.46926 * 2 1 4 4 N 1.29432 * 124.79833 * 90.02837 * 3 2 1 5 5 C 1.30945 * 117.36050 * 179.68973 * 4 3 2 6 6 C 1.50699 * 122.90936 * 180.34638 * 5 4 3 7 7 C 1.35671 * 114.19019 * 0.51744 * 5 4 3 8 8 C 1.46677 * 126.12927 * 179.78944 * 7 5 4 9 9 O 1.21690 * 120.00025 * 8.44175 * 8 7 5 10 10 N 1.34777 * 119.99822 * 188.44045 * 8 7 5 11 11 C 1.46497 * 120.00242 * 358.62965 * 10 8 7 12 12 C 1.46506 * 119.99681 * 178.62865 * 10 8 7 13 13 H 1.08997 * 110.91643 * 357.55474 * 12 10 8 14 14 C 1.54914 * 110.99924 * 121.45560 * 12 10 8 15 15 N 1.47436 * 104.92459 * 155.13534 * 14 12 10 16 16 C 1.36931 * 125.64512 * 155.83516 * 15 14 12 17 17 H 1.07996 * 120.00449 * 359.97438 * 16 15 14 18 18 C 1.38817 * 119.99795 * 179.97438 * 16 15 14 19 19 N 1.31613 * 120.00080 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99975 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47075 * 90.00176 * 20 18 16 22 22 H 1.48498 * 109.47281 * 210.00362 * 20 18 16 23 23 H 1.48500 * 109.47082 * 330.00159 * 20 18 16 24 24 C 1.47026 * 108.70323 * 335.81768 * 15 14 12 25 25 C 1.54319 * 107.26974 * 1.05736 * 24 15 14 26 26 H 1.09007 * 110.72115 * 263.83276 * 25 24 15 27 27 O 1.42897 * 110.72009 * 140.55991 * 25 24 15 28 28 S 1.70948 * 124.80871 * 269.99906 * 3 2 1 29 29 H 1.09003 * 109.46959 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46988 * 299.99713 * 1 2 3 31 31 H 1.09000 * 109.47225 * 60.00012 * 1 2 3 32 32 H 1.09001 * 109.46988 * 240.00287 * 2 1 3 33 33 H 1.09000 * 109.47225 * 119.99988 * 2 1 3 34 34 H 1.08998 * 109.47355 * 270.19088 * 6 5 4 35 35 H 1.09005 * 109.46837 * 30.18399 * 6 5 4 36 36 H 1.08992 * 109.47580 * 150.18534 * 6 5 4 37 37 H 1.09001 * 109.47225 * 276.34346 * 11 10 8 38 38 H 1.09004 * 109.46866 * 36.33812 * 11 10 8 39 39 H 1.09001 * 109.47099 * 156.33823 * 11 10 8 40 40 H 1.08998 * 110.36854 * 36.24820 * 14 12 10 41 41 H 1.09000 * 110.36508 * 274.02560 * 14 12 10 42 42 H 0.97001 * 120.00217 * 179.97438 * 19 18 16 43 43 H 1.08992 * 109.87873 * 120.47636 * 24 15 14 44 44 H 1.08997 * 109.87541 * 241.48480 * 24 15 14 45 45 H 0.96707 * 114.00332 * 61.45128 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2791 2.1171 1.0629 5 6 2.7177 3.3392 0.8934 6 6 3.0513 4.2560 2.0419 7 6 2.8423 3.7099 -0.4058 8 6 3.3038 5.0144 -0.8924 9 8 3.7619 5.8277 -0.1116 10 7 3.2205 5.3122 -2.2042 11 6 2.6970 4.3220 -3.1484 12 6 3.6536 6.6263 -2.6859 13 1 3.9746 7.2580 -1.8576 14 6 4.7752 6.4872 -3.7453 15 7 4.6876 7.7165 -4.5546 16 6 5.7091 8.2684 -5.2806 17 1 6.6807 7.7971 -5.2905 18 6 5.4956 9.4338 -6.0040 19 7 4.3117 10.0085 -5.9917 20 14 6.8893 10.1871 -6.9938 21 1 6.8791 9.6266 -8.3689 22 1 6.7108 11.6600 -7.0583 23 1 8.1858 9.8738 -6.3411 24 6 3.3218 8.2513 -4.4534 25 6 2.5327 7.3172 -3.5121 26 1 1.9665 6.5819 -4.0840 27 8 1.6684 8.0711 -2.6596 28 16 2.3576 2.3409 -1.4036 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 2.1639 4.8222 2.3245 35 1 3.3909 3.6644 2.8922 36 1 3.8406 4.9444 1.7399 37 1 3.4958 3.6398 -3.4396 38 1 1.8927 3.7586 -2.6753 39 1 2.3131 4.8306 -4.0327 40 1 4.6019 5.6098 -4.3683 41 1 5.7491 6.4210 -3.2602 42 1 4.1626 10.8231 -6.4969 43 1 3.3482 9.2590 -4.0391 44 1 2.8563 8.2677 -5.4389 45 1 0.9981 8.5832 -3.1326 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047561895.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:28 Heat of formation + Delta-G solvation = -27.427119 kcal Electronic energy + Delta-G solvation = -27757.395383 eV Core-core repulsion = 23902.049139 eV Total energy + Delta-G solvation = -3855.346244 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.65384 -40.76202 -39.33264 -36.76444 -36.49473 -35.22927 -33.90429 -31.91639 -30.77319 -29.51722 -28.91387 -27.92729 -26.47669 -26.19481 -23.39856 -22.79169 -22.32212 -21.17836 -19.87511 -19.33018 -19.03526 -18.27599 -17.68329 -17.44859 -16.87888 -16.60763 -16.05039 -15.81633 -15.68716 -15.40384 -14.93671 -14.78557 -14.56847 -14.54246 -14.36288 -14.11489 -14.08126 -13.77662 -13.71150 -13.23187 -13.17028 -13.08154 -12.81899 -12.75527 -12.67900 -12.54385 -12.37528 -12.09283 -12.04425 -11.90216 -11.62083 -11.13873 -10.95513 -10.78284 -10.58610 -10.41119 -10.04195 -9.54508 -8.97731 -7.89278 -5.26860 -0.81400 0.15385 0.55284 1.32987 1.46297 1.48492 1.56776 1.67838 2.00927 2.47232 2.96432 3.08382 3.32084 3.41650 3.54896 3.78404 3.82497 3.87409 3.99482 4.02627 4.11910 4.25011 4.32274 4.37906 4.40015 4.42549 4.57032 4.65304 4.66407 4.77495 4.78405 4.87844 4.95995 5.01344 5.08317 5.27703 5.32689 5.36048 5.38352 5.42657 5.64473 6.11269 6.13553 6.62450 6.81449 6.90418 7.03137 7.67719 8.30029 9.20527 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.022572 B = 0.002699 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.150020 B =10371.855027 C =10591.128288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.052 4.052 3 C 0.036 3.964 4 N -0.505 5.505 5 C 0.145 3.855 6 C -0.091 4.091 7 C -0.337 4.337 8 C 0.592 3.408 9 O -0.561 6.561 10 N -0.592 5.592 11 C 0.054 3.946 12 C 0.148 3.852 13 H 0.082 0.918 14 C 0.135 3.865 15 N -0.620 5.620 16 C -0.245 4.245 17 H 0.085 0.915 18 C -0.062 4.062 19 N -0.949 5.949 20 Si 0.981 3.019 21 H -0.281 1.281 22 H -0.295 1.295 23 H -0.271 1.271 24 C 0.164 3.836 25 C 0.084 3.916 26 H 0.091 0.909 27 O -0.572 6.572 28 S 0.255 5.745 29 H 0.091 0.909 30 H 0.046 0.954 31 H 0.062 0.938 32 H 0.115 0.885 33 H 0.098 0.902 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.105 0.895 40 H 0.053 0.947 41 H 0.042 0.958 42 H 0.249 0.751 43 H 0.019 0.981 44 H 0.029 0.971 45 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.874 -22.671 7.734 25.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.093 4.093 3 C -0.237 4.237 4 N -0.221 5.221 5 C 0.006 3.994 6 C -0.150 4.150 7 C -0.461 4.461 8 C 0.381 3.619 9 O -0.442 6.442 10 N -0.323 5.323 11 C -0.090 4.090 12 C 0.043 3.957 13 H 0.101 0.899 14 C 0.008 3.992 15 N -0.348 5.348 16 C -0.374 4.374 17 H 0.103 0.897 18 C -0.255 4.255 19 N -0.597 5.597 20 Si 0.809 3.191 21 H -0.207 1.207 22 H -0.222 1.222 23 H -0.196 1.196 24 C 0.038 3.962 25 C 0.023 3.977 26 H 0.108 0.892 27 O -0.379 6.379 28 S 0.516 5.484 29 H 0.109 0.891 30 H 0.065 0.935 31 H 0.081 0.919 32 H 0.133 0.867 33 H 0.116 0.884 34 H 0.099 0.901 35 H 0.105 0.895 36 H 0.101 0.899 37 H 0.108 0.892 38 H 0.105 0.895 39 H 0.123 0.877 40 H 0.071 0.929 41 H 0.060 0.940 42 H 0.058 0.942 43 H 0.037 0.963 44 H 0.047 0.953 45 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -9.403 -22.862 7.861 25.940 hybrid contribution 0.580 1.996 -0.150 2.083 sum -8.824 -20.867 7.711 23.932 Atomic orbital electron populations 1.21783 0.92462 1.03953 1.02185 1.20532 0.97400 0.85346 1.05973 1.28660 0.98278 1.03033 0.93772 1.66224 1.17127 1.05540 1.33178 1.20775 0.93645 0.91194 0.93815 1.20633 1.03160 0.97084 0.94083 1.25261 1.21247 1.00973 0.98578 1.17089 0.77740 0.85191 0.81887 1.90750 1.47709 1.50233 1.55542 1.47490 1.62917 1.15114 1.06785 1.22362 1.00400 0.91894 0.94321 1.22024 0.93970 0.83085 0.96628 0.89938 1.21876 0.96121 0.90157 0.91015 1.44489 1.08623 1.26404 1.55249 1.19443 0.91173 1.05756 1.20996 0.89672 1.25656 0.99575 0.98389 1.01879 1.70124 1.22452 1.21086 1.46085 0.85051 0.78596 0.76917 0.78578 1.20741 1.22201 1.19634 1.21610 0.84404 0.94407 0.95794 1.23417 0.90565 0.93069 0.90628 0.89168 1.86461 1.48788 1.65534 1.37140 1.83867 1.57495 0.99697 1.07363 0.89064 0.93523 0.91928 0.86694 0.88374 0.90086 0.89481 0.89854 0.89175 0.89532 0.87666 0.92891 0.94010 0.94169 0.96283 0.95307 0.75659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 9.90 71.98 0.71 -0.52 16 2 C -0.05 -0.52 6.51 29.85 0.19 -0.32 16 3 C 0.04 0.65 6.64 88.46 0.59 1.23 16 4 N -0.51 -12.31 10.50 -178.28 -1.87 -14.18 16 5 C 0.14 3.98 6.79 42.10 0.29 4.27 16 6 C -0.09 -2.41 9.80 71.24 0.70 -1.71 16 7 C -0.34 -9.22 6.25 23.88 0.15 -9.07 16 8 C 0.59 20.03 7.62 86.45 0.66 20.69 16 9 O -0.56 -23.14 13.65 -4.32 -0.06 -23.19 16 10 N -0.59 -18.33 2.91 -818.95 -2.39 -20.72 16 11 C 0.05 1.11 7.79 127.77 1.00 2.11 16 12 C 0.15 5.66 3.19 46.49 0.15 5.81 16 13 H 0.08 3.79 7.02 -2.39 -0.02 3.78 16 14 C 0.13 5.48 6.82 86.85 0.59 6.07 16 15 N -0.62 -31.34 3.40 -691.97 -2.35 -33.69 16 16 C -0.25 -13.52 10.28 84.04 0.86 -12.66 16 17 H 0.09 4.49 7.83 -2.91 -0.02 4.46 16 18 C -0.06 -3.45 5.49 84.86 0.47 -2.98 16 19 N -0.95 -55.68 10.31 21.65 0.22 -55.46 16 20 Si 0.98 45.08 29.55 68.60 2.03 47.11 16 21 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 22 H -0.30 -13.75 7.11 99.48 0.71 -13.05 16 23 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 24 C 0.16 7.84 5.15 86.73 0.45 8.29 16 25 C 0.08 3.10 3.86 31.88 0.12 3.22 16 26 H 0.09 2.77 6.09 -2.38 -0.01 2.76 16 27 O -0.57 -20.76 13.39 -148.98 -2.00 -22.76 16 28 S 0.26 4.36 18.12 -56.49 -1.02 3.34 16 29 H 0.09 0.40 8.14 -2.39 -0.02 0.39 16 30 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.09 1.97 8.14 -2.38 -0.02 1.95 16 36 H 0.08 2.58 5.85 -2.39 -0.01 2.57 16 37 H 0.09 1.54 7.87 -2.39 -0.02 1.52 16 38 H 0.09 1.50 4.51 -20.77 -0.09 1.41 16 39 H 0.11 2.04 6.08 -2.39 -0.01 2.03 16 40 H 0.05 1.89 7.26 -2.39 -0.02 1.88 16 41 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 43 H 0.02 1.06 7.30 -2.39 -0.02 1.04 16 44 H 0.03 1.48 7.50 -2.39 -0.02 1.46 16 45 H 0.39 10.87 9.11 -74.05 -0.67 10.19 16 Total: -1.00 -75.82 369.08 -0.24 -76.06 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: 0.27 Total: 19.06 kcal Atomic # 6 Polarization: 17.51 SS G_CDS: 6.92 Total: 24.43 kcal Atomic # 7 Polarization: -117.66 SS G_CDS: -6.38 Total: -124.04 kcal Atomic # 8 Polarization: -43.90 SS G_CDS: -2.05 Total: -45.95 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Atomic # 16 Polarization: 4.36 SS G_CDS: -1.02 Total: 3.34 kcal Total: -75.82 -0.24 -76.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047561895.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.636 kcal (2) G-P(sol) polarization free energy of solvation -75.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds