Wall clock time and date at job start Tue Mar 31 2020 23:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.50701 * 109.47151 * 2 1 4 4 N 1.29426 * 124.80762 * 89.97068 * 3 2 1 5 5 C 1.30945 * 117.36403 * 180.02562 * 4 3 2 6 6 C 1.50698 * 122.89995 * 180.02562 * 5 4 3 7 7 C 1.35658 * 114.19083 * 0.02562 * 5 4 3 8 8 C 1.46681 * 126.12894 * 179.97438 * 7 5 4 9 9 O 1.21686 * 119.99981 * 359.97438 * 8 7 5 10 10 N 1.34776 * 119.99820 * 179.97438 * 8 7 5 11 11 C 1.46511 * 119.99840 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.46946 * 179.97438 * 11 10 8 13 13 H 1.09005 * 109.67554 * 59.17099 * 12 11 10 14 14 C 1.53297 * 109.68109 * 179.68367 * 12 11 10 15 15 O 1.42957 * 109.22561 * 172.02785 * 14 12 11 16 16 C 1.42967 * 114.16404 * 297.42502 * 15 14 12 17 17 C 1.53290 * 109.22545 * 62.57840 * 16 15 14 18 18 N 1.47147 * 109.68274 * 298.65143 * 12 11 10 19 19 C 1.36936 * 120.98605 * 9.71223 * 18 12 11 20 20 H 1.08001 * 119.99425 * 328.47432 * 19 18 12 21 21 C 1.38810 * 120.00382 * 148.47137 * 19 18 12 22 22 N 1.31617 * 119.99805 * 349.22687 * 21 19 18 23 23 Si 1.86797 * 120.00027 * 169.21655 * 21 19 18 24 24 H 1.48497 * 109.47302 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.47135 * 120.00549 * 23 21 19 26 26 H 1.48496 * 109.47411 * 240.00403 * 23 21 19 27 27 S 1.70953 * 124.80049 * 270.00243 * 3 2 1 28 28 H 1.08998 * 109.46911 * 59.99947 * 1 2 3 29 29 H 1.08995 * 109.46664 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46840 * 299.99994 * 1 2 3 31 31 H 1.08998 * 109.47002 * 239.99550 * 2 1 3 32 32 H 1.08998 * 109.47130 * 119.99546 * 2 1 3 33 33 H 1.08999 * 109.46770 * 269.97479 * 6 5 4 34 34 H 1.08998 * 109.47432 * 29.97720 * 6 5 4 35 35 H 1.09005 * 109.46678 * 149.98031 * 6 5 4 36 36 H 0.96995 * 120.00248 * 359.97438 * 10 8 7 37 37 H 1.08996 * 109.46474 * 299.99761 * 11 10 8 38 38 H 1.08997 * 109.46701 * 59.99524 * 11 10 8 39 39 H 1.09004 * 109.51353 * 291.95534 * 14 12 11 40 40 H 1.09007 * 109.50967 * 52.05217 * 14 12 11 41 41 H 1.09005 * 109.51250 * 182.50582 * 16 15 14 42 42 H 1.09005 * 109.51060 * 302.65329 * 16 15 14 43 43 H 1.08992 * 109.68330 * 67.42443 * 17 16 15 44 44 H 1.09004 * 109.67824 * 187.93784 * 17 16 15 45 45 H 0.97007 * 119.99903 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2782 2.1175 1.0627 5 6 2.7106 3.3418 0.8930 6 6 3.0357 4.2616 2.0416 7 6 2.8406 3.7105 -0.4060 8 6 3.3008 5.0154 -0.8928 9 8 3.6077 5.8866 -0.1006 10 7 3.3838 5.2494 -2.2175 11 6 3.8441 6.5526 -2.7037 12 6 3.8459 6.5545 -4.2337 13 1 2.8401 6.3522 -4.6021 14 6 4.3193 7.9189 -4.7477 15 8 4.4955 7.8527 -6.1649 16 6 5.4979 6.9249 -6.5872 17 6 5.0848 5.5096 -6.1674 18 7 4.7719 5.5240 -4.7294 19 6 5.3273 4.6067 -3.8778 20 1 5.5323 4.8768 -2.8524 21 6 5.6266 3.3297 -4.3324 22 7 5.1888 2.9301 -5.5075 23 14 6.6510 2.1787 -3.2764 24 1 7.0166 2.8625 -2.0100 25 1 5.8645 0.9569 -2.9696 26 1 7.8857 1.8012 -4.0099 27 16 2.3576 2.3407 -1.4038 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 2.1452 4.8260 2.3184 34 1 3.3724 3.6727 2.8947 35 1 3.8247 4.9517 1.7423 36 1 3.1396 4.5549 -2.8489 37 1 3.1756 7.3328 -2.3398 38 1 4.8540 6.7403 -2.3392 39 1 3.5733 8.6769 -4.5086 40 1 5.2663 8.1778 -4.2740 41 1 5.6000 6.9678 -7.6716 42 1 6.4496 7.1798 -6.1209 43 1 4.2042 5.2018 -6.7311 44 1 5.9039 4.8163 -6.3586 45 1 5.3983 2.0378 -5.8253 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051160970.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:42 Heat of formation + Delta-G solvation = -16.548600 kcal Electronic energy + Delta-G solvation = -28314.402109 eV Core-core repulsion = 24459.527593 eV Total energy + Delta-G solvation = -3854.874516 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.14820 -39.08243 -38.22610 -35.41439 -34.29356 -33.66714 -31.71624 -30.78363 -30.50153 -28.32770 -27.20148 -25.60155 -25.20871 -23.50879 -22.13146 -21.88085 -21.01339 -19.82408 -19.09043 -17.74855 -17.06620 -16.22327 -15.96325 -15.75483 -15.34230 -15.01064 -14.66097 -14.55908 -14.30550 -14.18287 -13.87605 -13.72223 -13.50951 -13.29734 -13.00824 -12.91834 -12.69352 -12.36374 -11.98588 -11.90317 -11.79344 -11.59676 -11.33427 -11.11802 -11.11226 -10.95238 -10.79722 -10.46178 -10.29065 -10.11538 -9.78733 -9.70324 -9.46559 -9.30484 -9.02972 -8.76366 -8.60111 -8.33933 -6.78726 -5.97196 -3.47142 0.43245 1.36465 1.79399 2.61915 3.21788 3.31958 3.35922 3.49008 3.64898 4.02224 4.28873 4.48919 4.77367 4.98019 5.02950 5.07213 5.16926 5.21215 5.34015 5.44258 5.52339 5.62338 5.67703 5.72632 5.79769 5.81279 5.92784 5.96007 5.99932 6.01587 6.03685 6.11157 6.16810 6.28455 6.46340 6.49474 6.68936 6.95237 7.01870 7.43749 7.64782 7.74308 7.82087 8.03295 8.22990 8.61177 8.99678 9.59531 10.18989 11.09154 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012502 B = 0.004358 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2239.140279 B = 6423.621670 C = 7424.995669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.049 4.049 3 C 0.046 3.954 4 N -0.480 5.480 5 C 0.136 3.864 6 C -0.084 4.084 7 C -0.289 4.289 8 C 0.590 3.410 9 O -0.544 6.544 10 N -0.688 5.688 11 C 0.136 3.864 12 C 0.124 3.876 13 H 0.042 0.958 14 C 0.057 3.943 15 O -0.392 6.392 16 C 0.035 3.965 17 C 0.144 3.856 18 N -0.591 5.591 19 C -0.257 4.257 20 H 0.072 0.928 21 C 0.015 3.985 22 N -0.896 5.896 23 Si 0.884 3.116 24 H -0.276 1.276 25 H -0.284 1.284 26 H -0.286 1.286 27 S 0.191 5.809 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.100 0.900 36 H 0.413 0.587 37 H 0.063 0.937 38 H 0.071 0.929 39 H 0.083 0.917 40 H 0.047 0.953 41 H 0.080 0.920 42 H 0.041 0.959 43 H 0.030 0.970 44 H 0.092 0.908 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.136 -1.480 6.254 9.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.090 4.090 3 C -0.229 4.229 4 N -0.195 5.195 5 C -0.003 4.003 6 C -0.143 4.143 7 C -0.414 4.414 8 C 0.375 3.625 9 O -0.426 6.426 10 N -0.339 5.339 11 C 0.012 3.988 12 C 0.017 3.983 13 H 0.059 0.941 14 C -0.022 4.022 15 O -0.310 6.310 16 C -0.043 4.043 17 C 0.019 3.981 18 N -0.317 5.317 19 C -0.387 4.387 20 H 0.090 0.910 21 C -0.185 4.185 22 N -0.539 5.539 23 Si 0.713 3.287 24 H -0.201 1.201 25 H -0.210 1.210 26 H -0.212 1.212 27 S 0.450 5.550 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.106 0.894 32 H 0.113 0.887 33 H 0.095 0.905 34 H 0.088 0.912 35 H 0.118 0.882 36 H 0.251 0.749 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.102 0.898 40 H 0.066 0.934 41 H 0.098 0.902 42 H 0.059 0.941 43 H 0.048 0.952 44 H 0.110 0.890 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -7.155 -1.398 5.938 9.402 hybrid contribution 0.936 -0.825 0.907 1.542 sum -6.219 -2.223 6.844 9.511 Atomic orbital electron populations 1.21773 0.93347 1.02557 1.02779 1.20268 0.96807 0.87460 1.04495 1.27376 1.01666 1.01954 0.91951 1.66045 1.16071 1.05859 1.31507 1.20583 0.95506 0.90552 0.93619 1.20598 1.03432 0.96939 0.93375 1.25579 1.17739 1.00889 0.97146 1.16634 0.78162 0.84782 0.82925 1.90716 1.51579 1.45032 1.55237 1.45920 1.65143 1.17057 1.05747 1.21231 0.99891 0.83871 0.93787 1.21443 0.94447 0.90970 0.91452 0.94074 1.22851 1.00154 0.96933 0.82304 1.87805 1.59356 1.62250 1.21619 1.23355 0.90197 0.92239 0.98532 1.21410 1.00471 0.92142 0.84079 1.44091 1.49865 1.33348 1.04414 1.19239 1.35007 0.89997 0.94414 0.91037 1.25088 0.99807 0.96506 0.97072 1.69979 1.46271 1.18504 1.19173 0.86482 0.80455 0.81375 0.80374 1.20064 1.21044 1.21217 1.84419 1.56819 1.03866 1.09912 0.92199 0.91331 0.91953 0.89358 0.88706 0.90526 0.91215 0.88155 0.74889 0.91903 0.91083 0.89849 0.93424 0.90202 0.94086 0.95198 0.89009 0.93408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.90 37.16 0.37 -0.92 16 2 C -0.05 -0.52 6.51 -27.88 -0.18 -0.70 16 3 C 0.05 0.66 6.64 -13.29 -0.09 0.57 16 4 N -0.48 -7.73 10.50 -7.70 -0.08 -7.81 16 5 C 0.14 2.30 6.79 -83.89 -0.57 1.73 16 6 C -0.08 -1.25 9.69 36.00 0.35 -0.90 16 7 C -0.29 -5.20 6.48 -37.10 -0.24 -5.44 16 8 C 0.59 11.44 7.78 -12.85 -0.10 11.34 16 9 O -0.54 -11.20 14.27 5.20 0.07 -11.13 16 10 N -0.69 -13.23 3.81 -61.62 -0.23 -13.47 16 11 C 0.14 2.49 4.44 -4.04 -0.02 2.47 16 12 C 0.12 2.38 3.20 -67.42 -0.22 2.16 16 13 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 14 C 0.06 0.98 6.29 37.31 0.23 1.21 16 15 O -0.39 -7.45 10.74 -35.23 -0.38 -7.82 16 16 C 0.03 0.65 6.98 37.31 0.26 0.91 16 17 C 0.14 3.20 5.37 -3.53 -0.02 3.18 16 18 N -0.59 -13.34 3.03 -164.29 -0.50 -13.84 16 19 C -0.26 -6.28 7.09 -15.06 -0.11 -6.38 16 20 H 0.07 1.81 5.84 -52.49 -0.31 1.50 16 21 C 0.02 0.39 5.06 -17.43 -0.09 0.30 16 22 N -0.90 -23.48 11.17 55.49 0.62 -22.86 16 23 Si 0.88 20.65 29.57 -169.99 -5.03 15.62 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 26 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 27 S 0.19 3.08 22.31 -107.50 -2.40 0.68 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.10 1.63 6.01 -51.93 -0.31 1.32 16 36 H 0.41 8.33 6.57 -40.82 -0.27 8.06 16 37 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.07 1.40 7.52 -51.93 -0.39 1.01 16 39 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.05 0.82 8.14 -51.92 -0.42 0.39 16 41 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 42 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.09 2.24 6.37 -51.93 -0.33 1.91 16 45 H 0.26 6.57 8.31 -40.82 -0.34 6.23 16 LS Contribution 373.53 15.07 5.63 5.63 Total: -1.00 -28.74 373.53 -9.37 -38.11 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -6.66 Total: 7.37 kcal Atomic # 6 Polarization: 9.95 SS G_CDS: -0.42 Total: 9.53 kcal Atomic # 7 Polarization: -57.79 SS G_CDS: -0.19 Total: -57.98 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: -0.30 Total: -18.95 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.03 Total: 15.62 kcal Atomic # 16 Polarization: 3.08 SS G_CDS: -2.40 Total: 0.68 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -28.74 -9.37 -38.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051160970.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.559 kcal (2) G-P(sol) polarization free energy of solvation -28.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds