Wall clock time and date at job start Tue Mar 31 2020 23:24:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.50701 * 109.47151 * 2 1 4 4 N 1.29426 * 124.80762 * 89.97068 * 3 2 1 5 5 C 1.30945 * 117.36403 * 180.02562 * 4 3 2 6 6 C 1.50698 * 122.89995 * 180.02562 * 5 4 3 7 7 C 1.35658 * 114.19083 * 0.02562 * 5 4 3 8 8 C 1.46681 * 126.12894 * 179.97438 * 7 5 4 9 9 O 1.21686 * 119.99981 * 359.97438 * 8 7 5 10 10 N 1.34776 * 119.99820 * 179.97438 * 8 7 5 11 11 C 1.46511 * 119.99840 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.46946 * 179.97438 * 11 10 8 13 13 H 1.09005 * 109.67554 * 59.17099 * 12 11 10 14 14 C 1.53297 * 109.68109 * 179.68367 * 12 11 10 15 15 O 1.42957 * 109.22561 * 172.02785 * 14 12 11 16 16 C 1.42967 * 114.16404 * 297.42502 * 15 14 12 17 17 C 1.53290 * 109.22545 * 62.57840 * 16 15 14 18 18 N 1.47147 * 109.68274 * 298.65143 * 12 11 10 19 19 C 1.36936 * 120.98605 * 9.71223 * 18 12 11 20 20 H 1.08001 * 119.99425 * 328.47432 * 19 18 12 21 21 C 1.38810 * 120.00382 * 148.47137 * 19 18 12 22 22 N 1.31617 * 119.99805 * 349.22687 * 21 19 18 23 23 Si 1.86797 * 120.00027 * 169.21655 * 21 19 18 24 24 H 1.48497 * 109.47302 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.47135 * 120.00549 * 23 21 19 26 26 H 1.48496 * 109.47411 * 240.00403 * 23 21 19 27 27 S 1.70953 * 124.80049 * 270.00243 * 3 2 1 28 28 H 1.08998 * 109.46911 * 59.99947 * 1 2 3 29 29 H 1.08995 * 109.46664 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46840 * 299.99994 * 1 2 3 31 31 H 1.08998 * 109.47002 * 239.99550 * 2 1 3 32 32 H 1.08998 * 109.47130 * 119.99546 * 2 1 3 33 33 H 1.08999 * 109.46770 * 269.97479 * 6 5 4 34 34 H 1.08998 * 109.47432 * 29.97720 * 6 5 4 35 35 H 1.09005 * 109.46678 * 149.98031 * 6 5 4 36 36 H 0.96995 * 120.00248 * 359.97438 * 10 8 7 37 37 H 1.08996 * 109.46474 * 299.99761 * 11 10 8 38 38 H 1.08997 * 109.46701 * 59.99524 * 11 10 8 39 39 H 1.09004 * 109.51353 * 291.95534 * 14 12 11 40 40 H 1.09007 * 109.50967 * 52.05217 * 14 12 11 41 41 H 1.09005 * 109.51250 * 182.50582 * 16 15 14 42 42 H 1.09005 * 109.51060 * 302.65329 * 16 15 14 43 43 H 1.08992 * 109.68330 * 67.42443 * 17 16 15 44 44 H 1.09004 * 109.67824 * 187.93784 * 17 16 15 45 45 H 0.97007 * 119.99903 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2782 2.1175 1.0627 5 6 2.7106 3.3418 0.8930 6 6 3.0357 4.2616 2.0416 7 6 2.8406 3.7105 -0.4060 8 6 3.3008 5.0154 -0.8928 9 8 3.6077 5.8866 -0.1006 10 7 3.3838 5.2494 -2.2175 11 6 3.8441 6.5526 -2.7037 12 6 3.8459 6.5545 -4.2337 13 1 2.8401 6.3522 -4.6021 14 6 4.3193 7.9189 -4.7477 15 8 4.4955 7.8527 -6.1649 16 6 5.4979 6.9249 -6.5872 17 6 5.0848 5.5096 -6.1674 18 7 4.7719 5.5240 -4.7294 19 6 5.3273 4.6067 -3.8778 20 1 5.5323 4.8768 -2.8524 21 6 5.6266 3.3297 -4.3324 22 7 5.1888 2.9301 -5.5075 23 14 6.6510 2.1787 -3.2764 24 1 7.0166 2.8625 -2.0100 25 1 5.8645 0.9569 -2.9696 26 1 7.8857 1.8012 -4.0099 27 16 2.3576 2.3407 -1.4038 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 2.1452 4.8260 2.3184 34 1 3.3724 3.6727 2.8947 35 1 3.8247 4.9517 1.7423 36 1 3.1396 4.5549 -2.8489 37 1 3.1756 7.3328 -2.3398 38 1 4.8540 6.7403 -2.3392 39 1 3.5733 8.6769 -4.5086 40 1 5.2663 8.1778 -4.2740 41 1 5.6000 6.9678 -7.6716 42 1 6.4496 7.1798 -6.1209 43 1 4.2042 5.2018 -6.7311 44 1 5.9039 4.8163 -6.3586 45 1 5.3983 2.0378 -5.8253 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051160970.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:41 Heat of formation + Delta-G solvation = -34.661417 kcal Electronic energy + Delta-G solvation = -28315.187540 eV Core-core repulsion = 24459.527593 eV Total energy + Delta-G solvation = -3855.659946 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.48056 -40.55419 -39.73538 -36.99223 -35.41362 -35.23307 -33.38787 -32.25819 -31.84169 -29.68088 -28.92093 -26.88335 -26.39424 -25.25515 -23.64743 -22.92200 -22.45968 -21.46447 -20.52616 -19.00371 -18.70766 -17.76501 -17.55846 -17.23324 -16.65648 -16.44755 -16.25969 -15.99714 -15.70487 -15.48673 -15.25780 -15.21706 -14.87821 -14.70433 -14.45593 -14.32632 -13.96466 -13.57609 -13.50972 -13.12351 -12.98546 -12.92136 -12.78092 -12.60810 -12.52843 -12.36755 -12.17387 -12.11485 -12.02014 -11.88197 -11.31673 -11.16777 -10.81854 -10.67209 -10.60005 -10.57761 -10.03463 -9.74764 -8.63446 -7.90221 -5.40674 -0.83733 0.11644 0.53713 1.30974 1.34544 1.40397 1.45766 2.03696 2.20408 2.40906 2.90472 3.03264 3.26025 3.42076 3.75427 3.79077 3.97072 4.03642 4.17909 4.21402 4.24590 4.31696 4.47560 4.53765 4.57835 4.62501 4.65817 4.68442 4.72991 4.78713 4.83174 4.95216 4.99831 5.01571 5.09712 5.24467 5.28460 5.30496 5.45927 5.62487 5.66802 6.28998 6.35257 6.43461 6.55183 7.08293 7.10289 7.73778 8.30322 9.14279 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012502 B = 0.004358 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2239.140279 B = 6423.621670 C = 7424.995669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.054 4.054 3 C 0.068 3.932 4 N -0.493 5.493 5 C 0.138 3.862 6 C -0.081 4.081 7 C -0.323 4.323 8 C 0.589 3.411 9 O -0.562 6.562 10 N -0.692 5.692 11 C 0.141 3.859 12 C 0.125 3.875 13 H 0.037 0.963 14 C 0.059 3.941 15 O -0.396 6.396 16 C 0.046 3.954 17 C 0.150 3.850 18 N -0.605 5.605 19 C -0.243 4.243 20 H 0.062 0.938 21 C -0.019 4.019 22 N -0.919 5.919 23 Si 0.923 3.077 24 H -0.285 1.285 25 H -0.280 1.280 26 H -0.289 1.289 27 S 0.173 5.827 28 H 0.056 0.944 29 H 0.095 0.905 30 H 0.055 0.945 31 H 0.103 0.897 32 H 0.109 0.891 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.408 0.592 37 H 0.088 0.912 38 H 0.056 0.944 39 H 0.119 0.881 40 H 0.051 0.949 41 H 0.105 0.895 42 H 0.043 0.957 43 H 0.008 0.992 44 H 0.066 0.934 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.971 -1.582 7.015 10.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.094 4.094 3 C -0.207 4.207 4 N -0.208 5.208 5 C -0.001 4.001 6 C -0.140 4.140 7 C -0.447 4.447 8 C 0.375 3.625 9 O -0.445 6.445 10 N -0.342 5.342 11 C 0.017 3.983 12 C 0.018 3.982 13 H 0.055 0.945 14 C -0.020 4.020 15 O -0.315 6.315 16 C -0.032 4.032 17 C 0.024 3.976 18 N -0.331 5.331 19 C -0.373 4.373 20 H 0.080 0.920 21 C -0.217 4.217 22 N -0.564 5.564 23 Si 0.752 3.248 24 H -0.210 1.210 25 H -0.206 1.206 26 H -0.216 1.216 27 S 0.432 5.568 28 H 0.075 0.925 29 H 0.113 0.887 30 H 0.074 0.926 31 H 0.121 0.879 32 H 0.127 0.873 33 H 0.108 0.892 34 H 0.105 0.895 35 H 0.102 0.898 36 H 0.244 0.756 37 H 0.106 0.894 38 H 0.074 0.926 39 H 0.137 0.863 40 H 0.069 0.931 41 H 0.123 0.877 42 H 0.062 0.938 43 H 0.026 0.974 44 H 0.084 0.916 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -7.992 -1.475 6.698 10.532 hybrid contribution 1.136 -0.827 0.738 1.587 sum -6.857 -2.302 7.436 10.373 Atomic orbital electron populations 1.21770 0.91724 1.04201 1.02317 1.20574 0.98031 0.84915 1.05906 1.28171 0.98938 1.02958 0.90679 1.66150 1.17213 1.05688 1.31788 1.20968 0.94223 0.91052 0.93826 1.20606 1.03479 0.96672 0.93251 1.25470 1.20254 1.01038 0.97915 1.16818 0.77704 0.85250 0.82692 1.90692 1.52500 1.45836 1.55476 1.45951 1.65257 1.17206 1.05747 1.21231 0.99639 0.84279 0.93111 1.21578 0.93483 0.91132 0.91969 0.94510 1.22973 1.01363 0.96279 0.81361 1.87810 1.59288 1.61791 1.22602 1.23220 0.90094 0.89803 1.00061 1.21242 0.98579 0.93902 0.83847 1.44282 1.50679 1.33744 1.04406 1.19198 1.33862 0.90125 0.94081 0.91995 1.25440 1.01022 0.97472 0.97758 1.70068 1.47682 1.18507 1.20131 0.85889 0.79481 0.80498 0.78929 1.21032 1.20571 1.21610 1.84445 1.57467 1.03975 1.10903 0.92515 0.88665 0.92580 0.87872 0.87274 0.89169 0.89481 0.89787 0.75555 0.89440 0.92601 0.86303 0.93114 0.87729 0.93816 0.97363 0.91593 0.93836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 9.90 71.99 0.71 -1.42 16 2 C -0.05 -1.00 6.51 29.85 0.19 -0.80 16 3 C 0.07 1.87 6.64 88.46 0.59 2.45 16 4 N -0.49 -15.24 10.50 -178.29 -1.87 -17.11 16 5 C 0.14 4.60 6.79 42.09 0.29 4.88 16 6 C -0.08 -2.34 9.69 71.24 0.69 -1.65 16 7 C -0.32 -11.63 6.48 23.88 0.15 -11.47 16 8 C 0.59 23.03 7.78 86.45 0.67 23.70 16 9 O -0.56 -23.25 14.27 -4.30 -0.06 -23.31 16 10 N -0.69 -26.78 3.81 -467.07 -1.78 -28.56 16 11 C 0.14 5.07 4.44 86.38 0.38 5.45 16 12 C 0.12 4.67 3.20 44.97 0.14 4.81 16 13 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 14 C 0.06 1.89 6.29 72.08 0.45 2.34 16 15 O -0.40 -14.19 10.74 -148.98 -1.60 -15.79 16 16 C 0.05 1.67 6.98 72.08 0.50 2.17 16 17 C 0.15 6.68 5.37 86.35 0.46 7.14 16 18 N -0.61 -27.35 3.03 -673.71 -2.04 -29.40 16 19 C -0.24 -11.96 7.09 84.03 0.60 -11.36 16 20 H 0.06 3.18 5.84 -2.91 -0.02 3.16 16 21 C -0.02 -0.99 5.06 84.86 0.43 -0.56 16 22 N -0.92 -49.03 11.17 21.65 0.24 -48.78 16 23 Si 0.92 42.81 29.57 68.60 2.03 44.83 16 24 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 25 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 26 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 27 S 0.17 5.53 22.31 -56.49 -1.26 4.27 16 28 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.08 2.73 6.01 -2.38 -0.01 2.71 16 36 H 0.41 16.71 6.57 -92.71 -0.61 16.10 16 37 H 0.09 2.70 8.14 -2.39 -0.02 2.69 16 38 H 0.06 2.18 7.52 -2.39 -0.02 2.16 16 39 H 0.12 3.01 8.14 -2.38 -0.02 2.99 16 40 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 41 H 0.10 3.26 8.14 -2.38 -0.02 3.24 16 42 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 43 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 44 H 0.07 3.28 6.37 -2.39 -0.02 3.26 16 45 H 0.25 13.18 8.31 -92.70 -0.77 12.41 16 Total: -1.00 -61.73 373.53 0.33 -61.40 By element: Atomic # 1 Polarization: 26.36 SS G_CDS: 0.40 Total: 26.77 kcal Atomic # 6 Polarization: 19.42 SS G_CDS: 6.27 Total: 25.69 kcal Atomic # 7 Polarization: -118.40 SS G_CDS: -5.45 Total: -123.86 kcal Atomic # 8 Polarization: -37.44 SS G_CDS: -1.66 Total: -39.10 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.83 kcal Atomic # 16 Polarization: 5.53 SS G_CDS: -1.26 Total: 4.27 kcal Total: -61.73 0.33 -61.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051160970.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.736 kcal (2) G-P(sol) polarization free energy of solvation -61.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds