Wall clock time and date at job start Tue Mar 31 2020 22:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.32565 * 121.64596 * 2 1 4 4 S 1.77227 * 105.32226 * 179.97438 * 3 2 1 5 5 C 1.72220 * 94.84394 * 359.80770 * 4 3 2 6 6 O 1.21822 * 127.05834 * 180.19910 * 5 4 3 7 7 N 1.34239 * 105.88381 * 0.32420 * 5 4 3 8 8 C 1.46500 * 121.37957 * 179.87675 * 7 5 4 9 9 C 1.52997 * 109.47473 * 269.71968 * 8 7 5 10 10 C 1.50701 * 109.47212 * 179.97438 * 9 8 7 11 11 O 1.21280 * 119.99781 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99795 * 179.97438 * 10 9 8 13 13 C 1.47022 * 125.64445 * 179.71926 * 12 10 9 14 14 C 1.54327 * 107.26447 * 178.85381 * 13 12 10 15 15 H 1.09003 * 110.67447 * 96.52080 * 14 13 12 16 16 C 1.53005 * 110.85210 * 219.67181 * 14 13 12 17 17 C 1.55156 * 103.02221 * 338.13784 * 14 13 12 18 18 H 1.09003 * 111.04375 * 153.39206 * 17 14 13 19 19 N 1.46497 * 111.00524 * 277.23481 * 17 14 13 20 20 C 1.36942 * 120.00097 * 198.64671 * 19 17 14 21 21 H 1.07994 * 119.99932 * 359.97438 * 20 19 17 22 22 C 1.38804 * 119.99866 * 180.02562 * 20 19 17 23 23 N 1.31618 * 120.00377 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99881 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47303 * 59.99729 * 24 22 20 26 26 H 1.48503 * 109.47317 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47137 * 299.99330 * 24 22 20 28 28 C 1.47417 * 125.64778 * 0.03047 * 12 10 9 29 29 H 1.08997 * 109.47041 * 270.02568 * 1 2 3 30 30 H 1.08999 * 109.46893 * 30.02861 * 1 2 3 31 31 H 1.09000 * 109.46828 * 150.02127 * 1 2 3 32 32 H 1.08004 * 127.33840 * 359.97438 * 3 2 1 33 33 H 1.09002 * 109.47129 * 149.71710 * 8 7 5 34 34 H 1.08998 * 109.46845 * 29.72517 * 8 7 5 35 35 H 1.09002 * 109.47153 * 59.99757 * 9 8 7 36 36 H 1.09001 * 109.46832 * 299.99948 * 9 8 7 37 37 H 1.09005 * 109.87945 * 298.39569 * 13 12 10 38 38 H 1.09000 * 109.88384 * 59.55810 * 13 12 10 39 39 H 1.09002 * 109.47449 * 173.69009 * 16 14 13 40 40 H 1.09001 * 109.46739 * 293.69209 * 16 14 13 41 41 H 1.08996 * 109.46733 * 53.69052 * 16 14 13 42 42 H 0.97000 * 120.00217 * 18.65021 * 19 17 14 43 43 H 0.96999 * 120.00216 * 180.02562 * 23 22 20 44 44 H 1.09003 * 110.36926 * 322.92513 * 28 12 10 45 45 H 1.08999 * 110.36739 * 85.25011 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2026 1.1285 0.0000 4 16 3.9034 0.6304 0.0008 5 6 3.5607 -1.0573 0.0068 6 8 4.3673 -1.9702 0.0129 7 7 2.2223 -1.1604 0.0006 8 6 1.5578 -2.4660 0.0006 9 6 1.3270 -2.9209 -1.4419 10 6 0.6440 -4.2643 -1.4418 11 8 0.3685 -4.8044 -0.3915 12 7 0.3385 -4.8650 -2.6091 13 6 -0.3194 -6.1718 -2.7537 14 6 -0.4889 -6.4345 -4.2649 15 1 0.3244 -7.0552 -4.6412 16 6 -1.8428 -7.0849 -4.5562 17 6 -0.4209 -5.0104 -4.8771 18 1 -0.0638 -5.0435 -5.9064 19 7 -1.7219 -4.3418 -4.7969 20 6 -1.9877 -3.2628 -5.5972 21 1 -1.2381 -2.9045 -6.2871 22 6 -3.2202 -2.6289 -5.5208 23 7 -4.1337 -3.0652 -4.6796 24 14 -3.5831 -1.1575 -6.6129 25 1 -3.4744 -1.5601 -8.0382 26 1 -4.9580 -0.6664 -6.3413 27 1 -2.6056 -0.0766 -6.3279 28 6 0.6145 -4.3233 -3.9521 29 1 -0.3633 0.0005 1.0276 30 1 -0.3633 0.8897 -0.5143 31 1 -0.3633 -0.8902 -0.5135 32 1 1.8153 2.1367 -0.0004 33 1 0.5996 -2.3861 0.5140 34 1 2.1858 -3.1934 0.5149 35 1 2.2852 -3.0009 -1.9553 36 1 0.6989 -2.1936 -1.9561 37 1 0.2999 -6.9499 -2.3073 38 1 -1.2965 -6.1504 -2.2711 39 1 -1.9865 -7.1578 -5.6342 40 1 -1.8684 -8.0825 -4.1179 41 1 -2.6380 -6.4776 -4.1239 42 1 -2.3951 -4.6633 -4.1770 43 1 -4.9951 -2.6225 -4.6265 44 1 0.4734 -3.2425 -3.9616 45 1 1.6280 -4.5772 -4.2626 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054745481.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:23 Heat of formation + Delta-G solvation = -24.195146 kcal Electronic energy + Delta-G solvation = -27850.494238 eV Core-core repulsion = 23995.288143 eV Total energy + Delta-G solvation = -3855.206095 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.21807 -39.80674 -37.81320 -37.61262 -33.95902 -33.52558 -32.47543 -31.34596 -30.55404 -28.45572 -27.81906 -26.34567 -24.73084 -23.95785 -23.17434 -21.94625 -20.45849 -19.32395 -19.01366 -18.21060 -17.69217 -17.30891 -16.44069 -16.31905 -16.00305 -15.36000 -15.17144 -14.70181 -14.54597 -14.22253 -13.92107 -13.82847 -13.75078 -13.45847 -13.13876 -12.99804 -12.87012 -12.49378 -12.42531 -12.19025 -11.96374 -11.64254 -11.51598 -11.35207 -11.31557 -11.19024 -10.98804 -10.80706 -10.54472 -10.37584 -10.20860 -10.02299 -9.87012 -9.73807 -9.58086 -9.11345 -8.31658 -8.11854 -7.11854 -5.91007 -3.21276 0.80439 1.21330 1.62727 1.99867 2.55951 2.82857 3.30519 3.33247 3.38925 3.39830 4.31337 4.45297 4.62940 4.65495 4.72113 4.91068 5.04040 5.08531 5.17423 5.25400 5.25959 5.31877 5.35756 5.47331 5.50305 5.54468 5.58737 5.70093 5.82942 5.86377 5.91373 5.98610 6.11429 6.14114 6.28341 6.29948 6.42464 6.53406 6.58658 6.68354 6.85147 7.16067 7.55818 7.81177 8.26684 8.35706 9.38672 9.93703 10.28692 11.30754 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010250 B = 0.003604 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2731.108246 B = 7767.152691 C = 9576.916368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.110 3.890 3 C -0.242 4.242 4 S -0.008 6.008 5 C 0.480 3.520 6 O -0.473 6.473 7 N -0.532 5.532 8 C 0.118 3.882 9 C -0.152 4.152 10 C 0.536 3.464 11 O -0.556 6.556 12 N -0.599 5.599 13 C 0.117 3.883 14 C -0.113 4.113 15 H 0.080 0.920 16 C -0.132 4.132 17 C 0.172 3.828 18 H 0.071 0.929 19 N -0.709 5.709 20 C -0.249 4.249 21 H 0.071 0.929 22 C -0.006 4.006 23 N -0.928 5.928 24 Si 0.906 3.094 25 H -0.285 1.285 26 H -0.291 1.291 27 H -0.286 1.286 28 C 0.067 3.933 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.082 0.918 32 H 0.192 0.808 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.096 0.904 36 H 0.103 0.897 37 H 0.059 0.941 38 H 0.068 0.932 39 H 0.060 0.940 40 H 0.045 0.955 41 H 0.068 0.932 42 H 0.387 0.613 43 H 0.257 0.743 44 H 0.080 0.920 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.378 3.861 7.311 13.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.001 4.001 3 C -0.380 4.380 4 S 0.235 5.765 5 C 0.162 3.838 6 O -0.353 6.353 7 N -0.252 5.252 8 C -0.007 4.007 9 C -0.193 4.193 10 C 0.324 3.676 11 O -0.436 6.436 12 N -0.331 5.331 13 C -0.006 4.006 14 C -0.133 4.133 15 H 0.098 0.902 16 C -0.190 4.190 17 C 0.059 3.941 18 H 0.089 0.911 19 N -0.350 5.350 20 C -0.380 4.380 21 H 0.089 0.911 22 C -0.203 4.203 23 N -0.575 5.575 24 Si 0.737 3.263 25 H -0.212 1.212 26 H -0.217 1.217 27 H -0.213 1.213 28 C -0.060 4.060 29 H 0.105 0.895 30 H 0.112 0.888 31 H 0.101 0.899 32 H 0.209 0.791 33 H 0.122 0.878 34 H 0.121 0.879 35 H 0.114 0.886 36 H 0.122 0.878 37 H 0.077 0.923 38 H 0.086 0.914 39 H 0.079 0.921 40 H 0.064 0.936 41 H 0.087 0.913 42 H 0.223 0.777 43 H 0.067 0.933 44 H 0.098 0.902 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 11.885 3.824 7.809 14.726 hybrid contribution -1.610 0.170 -0.511 1.698 sum 10.275 3.994 7.297 13.220 Atomic orbital electron populations 1.20862 0.86258 1.05316 1.04147 1.19556 0.96081 0.84792 0.99688 1.24876 0.92868 1.01341 1.18902 1.85081 1.08909 1.01401 1.81128 1.21601 0.83815 0.95648 0.82689 1.90967 1.48677 1.42417 1.53249 1.46151 1.06361 1.07979 1.64723 1.21621 0.99866 0.82068 0.97100 1.21924 1.02892 0.96295 0.98198 1.19764 0.79008 0.86260 0.82604 1.90682 1.55673 1.66537 1.30688 1.48290 1.58232 1.20511 1.06039 1.21962 0.97580 0.84255 0.96754 1.22497 0.99056 0.97923 0.93846 0.90208 1.21603 0.96172 0.99051 1.02129 1.21352 0.87528 0.89220 0.95971 0.91095 1.42382 1.10977 1.34690 1.46989 1.19171 0.98360 1.05359 1.15075 0.91096 1.24733 0.96481 0.99648 0.99431 1.69648 1.06170 1.42744 1.38974 0.86301 0.77163 0.82598 0.80264 1.21160 1.21672 1.21251 1.23457 0.99245 1.00619 0.82650 0.89471 0.88821 0.89912 0.79113 0.87829 0.87912 0.88562 0.87845 0.92263 0.91355 0.92071 0.93634 0.91263 0.77696 0.93302 0.90181 0.92524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.88 9.30 36.01 0.34 -0.54 16 2 C 0.11 1.09 6.59 -82.50 -0.54 0.55 16 3 C -0.24 -2.15 11.24 28.82 0.32 -1.82 16 4 S -0.01 -0.09 22.97 -107.50 -2.47 -2.55 16 5 C 0.48 6.65 8.27 53.81 0.45 7.09 16 6 O -0.47 -7.97 17.55 5.08 0.09 -7.88 16 7 N -0.53 -6.44 2.60 -117.28 -0.31 -6.75 16 8 C 0.12 1.51 4.27 -4.04 -0.02 1.49 16 9 C -0.15 -2.08 4.93 -27.88 -0.14 -2.21 16 10 C 0.54 8.96 7.85 -10.98 -0.09 8.87 16 11 O -0.56 -10.67 16.31 5.56 0.09 -10.58 16 12 N -0.60 -9.88 3.33 -170.51 -0.57 -10.45 16 13 C 0.12 1.86 6.47 -3.06 -0.02 1.84 16 14 C -0.11 -1.68 3.41 -88.78 -0.30 -1.98 16 15 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 16 C -0.13 -1.99 8.72 37.16 0.32 -1.67 16 17 C 0.17 2.98 3.44 -65.78 -0.23 2.75 16 18 H 0.07 1.20 8.13 -51.93 -0.42 0.78 16 19 N -0.71 -15.78 4.74 -51.35 -0.24 -16.02 16 20 C -0.25 -6.22 9.98 -15.06 -0.15 -6.38 16 21 H 0.07 1.71 7.83 -52.49 -0.41 1.30 16 22 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 23 N -0.93 -26.14 13.06 55.49 0.72 -25.41 16 24 Si 0.91 20.87 29.55 -169.99 -5.02 15.84 16 25 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 26 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 27 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 28 C 0.07 1.05 6.38 -2.53 -0.02 1.04 16 29 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.09 0.64 8.10 -51.93 -0.42 0.22 16 31 H 0.08 0.80 6.22 -51.93 -0.32 0.48 16 32 H 0.19 1.13 8.06 -52.48 -0.42 0.71 16 33 H 0.10 1.23 6.79 -51.93 -0.35 0.88 16 34 H 0.10 1.44 7.75 -51.93 -0.40 1.04 16 35 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.10 1.38 7.22 -51.93 -0.38 1.01 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.07 1.19 7.77 -51.93 -0.40 0.79 16 39 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.07 1.24 6.36 -51.93 -0.33 0.91 16 42 H 0.39 9.40 6.08 -40.82 -0.25 9.15 16 43 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 44 H 0.08 1.36 7.48 -51.93 -0.39 0.97 16 45 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 380.89 15.07 5.74 5.74 Total: -1.00 -31.10 380.89 -8.73 -39.82 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -6.59 Total: 9.47 kcal Atomic # 6 Polarization: 8.94 SS G_CDS: -0.17 Total: 8.77 kcal Atomic # 7 Polarization: -58.24 SS G_CDS: -0.39 Total: -58.63 kcal Atomic # 8 Polarization: -18.64 SS G_CDS: 0.18 Total: -18.46 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 16 Polarization: -0.09 SS G_CDS: -2.47 Total: -2.55 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.10 -8.73 -39.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054745481.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.630 kcal (2) G-P(sol) polarization free energy of solvation -31.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds