Wall clock time and date at job start Tue Mar 31 2020 22:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.32565 * 121.64596 * 2 1 4 4 S 1.77227 * 105.32226 * 179.97438 * 3 2 1 5 5 C 1.72220 * 94.84394 * 359.80770 * 4 3 2 6 6 O 1.21822 * 127.05834 * 180.19910 * 5 4 3 7 7 N 1.34239 * 105.88381 * 0.32420 * 5 4 3 8 8 C 1.46500 * 121.37957 * 179.87675 * 7 5 4 9 9 C 1.52997 * 109.47473 * 269.71968 * 8 7 5 10 10 C 1.50701 * 109.47212 * 179.97438 * 9 8 7 11 11 O 1.21280 * 119.99781 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99795 * 179.97438 * 10 9 8 13 13 C 1.47022 * 125.64445 * 179.71926 * 12 10 9 14 14 C 1.54327 * 107.26447 * 178.85381 * 13 12 10 15 15 H 1.09003 * 110.67447 * 96.52080 * 14 13 12 16 16 C 1.53005 * 110.85210 * 219.67181 * 14 13 12 17 17 C 1.55156 * 103.02221 * 338.13784 * 14 13 12 18 18 H 1.09003 * 111.04375 * 153.39206 * 17 14 13 19 19 N 1.46497 * 111.00524 * 277.23481 * 17 14 13 20 20 C 1.36942 * 120.00097 * 198.64671 * 19 17 14 21 21 H 1.07994 * 119.99932 * 359.97438 * 20 19 17 22 22 C 1.38804 * 119.99866 * 180.02562 * 20 19 17 23 23 N 1.31618 * 120.00377 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99881 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47303 * 59.99729 * 24 22 20 26 26 H 1.48503 * 109.47317 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47137 * 299.99330 * 24 22 20 28 28 C 1.47417 * 125.64778 * 0.03047 * 12 10 9 29 29 H 1.08997 * 109.47041 * 270.02568 * 1 2 3 30 30 H 1.08999 * 109.46893 * 30.02861 * 1 2 3 31 31 H 1.09000 * 109.46828 * 150.02127 * 1 2 3 32 32 H 1.08004 * 127.33840 * 359.97438 * 3 2 1 33 33 H 1.09002 * 109.47129 * 149.71710 * 8 7 5 34 34 H 1.08998 * 109.46845 * 29.72517 * 8 7 5 35 35 H 1.09002 * 109.47153 * 59.99757 * 9 8 7 36 36 H 1.09001 * 109.46832 * 299.99948 * 9 8 7 37 37 H 1.09005 * 109.87945 * 298.39569 * 13 12 10 38 38 H 1.09000 * 109.88384 * 59.55810 * 13 12 10 39 39 H 1.09002 * 109.47449 * 173.69009 * 16 14 13 40 40 H 1.09001 * 109.46739 * 293.69209 * 16 14 13 41 41 H 1.08996 * 109.46733 * 53.69052 * 16 14 13 42 42 H 0.97000 * 120.00217 * 18.65021 * 19 17 14 43 43 H 0.96999 * 120.00216 * 180.02562 * 23 22 20 44 44 H 1.09003 * 110.36926 * 322.92513 * 28 12 10 45 45 H 1.08999 * 110.36739 * 85.25011 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2026 1.1285 0.0000 4 16 3.9034 0.6304 0.0008 5 6 3.5607 -1.0573 0.0068 6 8 4.3673 -1.9702 0.0129 7 7 2.2223 -1.1604 0.0006 8 6 1.5578 -2.4660 0.0006 9 6 1.3270 -2.9209 -1.4419 10 6 0.6440 -4.2643 -1.4418 11 8 0.3685 -4.8044 -0.3915 12 7 0.3385 -4.8650 -2.6091 13 6 -0.3194 -6.1718 -2.7537 14 6 -0.4889 -6.4345 -4.2649 15 1 0.3244 -7.0552 -4.6412 16 6 -1.8428 -7.0849 -4.5562 17 6 -0.4209 -5.0104 -4.8771 18 1 -0.0638 -5.0435 -5.9064 19 7 -1.7219 -4.3418 -4.7969 20 6 -1.9877 -3.2628 -5.5972 21 1 -1.2381 -2.9045 -6.2871 22 6 -3.2202 -2.6289 -5.5208 23 7 -4.1337 -3.0652 -4.6796 24 14 -3.5831 -1.1575 -6.6129 25 1 -3.4744 -1.5601 -8.0382 26 1 -4.9580 -0.6664 -6.3413 27 1 -2.6056 -0.0766 -6.3279 28 6 0.6145 -4.3233 -3.9521 29 1 -0.3633 0.0005 1.0276 30 1 -0.3633 0.8897 -0.5143 31 1 -0.3633 -0.8902 -0.5135 32 1 1.8153 2.1367 -0.0004 33 1 0.5996 -2.3861 0.5140 34 1 2.1858 -3.1934 0.5149 35 1 2.2852 -3.0009 -1.9553 36 1 0.6989 -2.1936 -1.9561 37 1 0.2999 -6.9499 -2.3073 38 1 -1.2965 -6.1504 -2.2711 39 1 -1.9865 -7.1578 -5.6342 40 1 -1.8684 -8.0825 -4.1179 41 1 -2.6380 -6.4776 -4.1239 42 1 -2.3951 -4.6633 -4.1770 43 1 -4.9951 -2.6225 -4.6265 44 1 0.4734 -3.2425 -3.9616 45 1 1.6280 -4.5772 -4.2626 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054745481.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:22 Heat of formation + Delta-G solvation = -43.416396 kcal Electronic energy + Delta-G solvation = -27851.327734 eV Core-core repulsion = 23995.288143 eV Total energy + Delta-G solvation = -3856.039591 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.18787 -41.11817 -39.12995 -38.69569 -35.66267 -34.58877 -33.86449 -32.40202 -32.09705 -29.45509 -29.25309 -27.47650 -25.85522 -25.69537 -24.20030 -23.27507 -21.41026 -20.67711 -20.31877 -19.34416 -19.08917 -18.55433 -17.62482 -17.54438 -17.20065 -16.75606 -16.28140 -16.14892 -15.81646 -15.52833 -15.17272 -14.87798 -14.64203 -14.54130 -14.45426 -14.42846 -13.96668 -13.72513 -13.56663 -13.39431 -13.14904 -13.02598 -12.87779 -12.75752 -12.47279 -12.37988 -12.27124 -12.16983 -12.13712 -11.96669 -11.48568 -11.36787 -11.26955 -11.10292 -10.91908 -10.62411 -9.70464 -8.99497 -8.94252 -7.89628 -5.17896 -0.14866 0.34352 0.80440 1.06921 1.49543 1.51782 1.53205 1.58945 1.60977 2.08196 2.59363 3.32309 3.41474 3.54486 3.58789 3.64058 3.84718 3.87543 3.94235 4.10256 4.16640 4.20817 4.31788 4.41169 4.50362 4.62712 4.63729 4.64509 4.67984 4.74994 4.76360 4.84557 4.95001 4.95840 4.99341 5.18222 5.22840 5.23733 5.37119 5.53917 5.59987 5.70142 6.18244 6.31068 6.49131 7.02748 7.39050 8.13508 8.36602 9.33198 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010250 B = 0.003604 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2731.108246 B = 7767.152691 C = 9576.916368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.089 3.911 3 C -0.220 4.220 4 S 0.012 5.988 5 C 0.460 3.540 6 O -0.519 6.519 7 N -0.530 5.530 8 C 0.126 3.874 9 C -0.138 4.138 10 C 0.529 3.471 11 O -0.586 6.586 12 N -0.603 5.603 13 C 0.115 3.885 14 C -0.099 4.099 15 H 0.116 0.884 16 C -0.126 4.126 17 C 0.160 3.840 18 H 0.083 0.917 19 N -0.721 5.721 20 C -0.237 4.237 21 H 0.081 0.919 22 C -0.068 4.068 23 N -0.968 5.968 24 Si 0.965 3.035 25 H -0.281 1.281 26 H -0.303 1.303 27 H -0.277 1.277 28 C 0.075 3.925 29 H 0.101 0.899 30 H 0.112 0.888 31 H 0.063 0.937 32 H 0.229 0.771 33 H 0.110 0.890 34 H 0.085 0.915 35 H 0.100 0.900 36 H 0.108 0.892 37 H 0.074 0.926 38 H 0.044 0.956 39 H 0.058 0.942 40 H 0.070 0.930 41 H 0.034 0.966 42 H 0.374 0.626 43 H 0.248 0.752 44 H 0.067 0.933 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.557 5.087 6.499 14.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.020 4.020 3 C -0.357 4.357 4 S 0.255 5.745 5 C 0.144 3.856 6 O -0.403 6.403 7 N -0.250 5.250 8 C 0.000 4.000 9 C -0.179 4.179 10 C 0.318 3.682 11 O -0.468 6.468 12 N -0.335 5.335 13 C -0.007 4.007 14 C -0.119 4.119 15 H 0.134 0.866 16 C -0.184 4.184 17 C 0.050 3.950 18 H 0.101 0.899 19 N -0.360 5.360 20 C -0.368 4.368 21 H 0.099 0.901 22 C -0.260 4.260 23 N -0.618 5.618 24 Si 0.795 3.205 25 H -0.207 1.207 26 H -0.229 1.229 27 H -0.203 1.203 28 C -0.050 4.050 29 H 0.119 0.881 30 H 0.131 0.869 31 H 0.082 0.918 32 H 0.245 0.755 33 H 0.128 0.872 34 H 0.104 0.896 35 H 0.118 0.882 36 H 0.126 0.874 37 H 0.092 0.908 38 H 0.062 0.938 39 H 0.077 0.923 40 H 0.089 0.911 41 H 0.053 0.947 42 H 0.208 0.792 43 H 0.057 0.943 44 H 0.086 0.914 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 13.103 5.074 6.965 15.683 hybrid contribution -1.923 -0.209 -0.253 1.951 sum 11.180 4.864 6.712 13.918 Atomic orbital electron populations 1.20914 0.84895 1.05293 1.05105 1.19907 0.96925 0.84275 1.00871 1.25424 0.91160 1.02502 1.16589 1.85042 1.10462 0.98748 1.80222 1.22034 0.84033 0.96596 0.82957 1.90930 1.49838 1.44143 1.55407 1.46164 1.06120 1.08392 1.64348 1.21447 0.99779 0.82370 0.96399 1.21814 1.02598 0.94599 0.98878 1.20265 0.78726 0.86996 0.82216 1.90661 1.56967 1.67453 1.31680 1.48428 1.57960 1.20757 1.06324 1.22008 0.96658 0.84543 0.97526 1.22486 0.99981 0.96761 0.92640 0.86627 1.21528 0.95289 0.99806 1.01774 1.21639 0.85718 0.90537 0.97114 0.89916 1.42531 1.12666 1.34492 1.46346 1.19577 0.97997 1.05097 1.14159 0.90094 1.25420 0.96856 1.02510 1.01256 1.69811 1.06350 1.44327 1.41316 0.85348 0.76302 0.80095 0.78790 1.20727 1.22946 1.20275 1.23359 1.00253 0.99641 0.81750 0.88068 0.86912 0.91776 0.75494 0.87173 0.89607 0.88184 0.87422 0.90823 0.93772 0.92325 0.91121 0.94712 0.79212 0.94286 0.91411 0.89250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.49 9.30 71.24 0.66 -0.82 16 2 C 0.09 1.61 6.59 40.71 0.27 1.87 16 3 C -0.22 -3.22 11.24 66.67 0.75 -2.47 16 4 S 0.01 0.25 22.97 -56.49 -1.30 -1.05 16 5 C 0.46 12.65 8.27 129.88 1.07 13.72 16 6 O -0.52 -17.96 17.55 -4.74 -0.08 -18.04 16 7 N -0.53 -12.54 2.60 -643.42 -1.68 -14.22 16 8 C 0.13 3.23 4.27 86.38 0.37 3.59 16 9 C -0.14 -3.74 4.93 29.85 0.15 -3.59 16 10 C 0.53 17.67 7.85 87.66 0.69 18.36 16 11 O -0.59 -22.85 16.31 -3.03 -0.05 -22.90 16 12 N -0.60 -19.40 3.33 -811.77 -2.70 -22.10 16 13 C 0.12 3.55 6.47 86.73 0.56 4.11 16 14 C -0.10 -2.73 3.41 -9.60 -0.03 -2.76 16 15 H 0.12 2.44 8.14 -2.39 -0.02 2.42 16 16 C -0.13 -3.69 8.72 71.98 0.63 -3.06 16 17 C 0.16 5.28 3.44 46.39 0.16 5.44 16 18 H 0.08 2.57 8.13 -2.39 -0.02 2.55 16 19 N -0.72 -31.89 4.74 -316.37 -1.50 -33.39 16 20 C -0.24 -11.69 9.98 84.03 0.84 -10.85 16 21 H 0.08 3.77 7.83 -2.91 -0.02 3.74 16 22 C -0.07 -3.59 5.50 84.86 0.47 -3.12 16 23 N -0.97 -55.75 13.06 21.65 0.28 -55.46 16 24 Si 0.96 42.86 29.55 68.60 2.03 44.89 16 25 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 26 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 27 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 28 C 0.08 2.23 6.38 86.86 0.55 2.79 16 29 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.11 1.19 8.10 -2.39 -0.02 1.17 16 31 H 0.06 1.19 6.22 -2.39 -0.01 1.18 16 32 H 0.23 1.60 8.06 -2.91 -0.02 1.57 16 33 H 0.11 2.64 6.79 -2.39 -0.02 2.63 16 34 H 0.09 2.51 7.75 -2.39 -0.02 2.49 16 35 H 0.10 2.63 8.14 -2.39 -0.02 2.62 16 36 H 0.11 2.83 7.22 -2.39 -0.02 2.81 16 37 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 38 H 0.04 1.57 7.77 -2.39 -0.02 1.55 16 39 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.03 1.26 6.36 -2.39 -0.02 1.24 16 42 H 0.37 18.57 6.08 -92.71 -0.56 18.00 16 43 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 44 H 0.07 2.20 7.48 -2.39 -0.02 2.18 16 45 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -69.10 380.89 2.59 -66.51 By element: Atomic # 1 Polarization: 32.10 SS G_CDS: 0.45 Total: 32.55 kcal Atomic # 6 Polarization: 16.07 SS G_CDS: 7.13 Total: 23.21 kcal Atomic # 7 Polarization: -119.58 SS G_CDS: -5.59 Total: -125.17 kcal Atomic # 8 Polarization: -40.80 SS G_CDS: -0.13 Total: -40.94 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Atomic # 16 Polarization: 0.25 SS G_CDS: -1.30 Total: -1.05 kcal Total: -69.10 2.59 -66.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054745481.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.095 kcal (2) G-P(sol) polarization free energy of solvation -69.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds