Wall clock time and date at job start Tue Mar 31 2020 22:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.32571 * 121.64987 * 2 1 4 4 S 1.77228 * 105.32140 * 180.19171 * 3 2 1 5 5 C 1.72208 * 94.84573 * 359.76535 * 4 3 2 6 6 O 1.21830 * 127.05957 * 179.97438 * 5 4 3 7 7 N 1.34240 * 105.88662 * 359.97438 * 5 4 3 8 8 C 1.46504 * 121.38010 * 179.97438 * 7 5 4 9 9 C 1.50704 * 109.46971 * 90.02757 * 8 7 5 10 10 O 1.21276 * 119.99854 * 0.02562 * 9 8 7 11 11 N 1.34781 * 119.99668 * 180.02562 * 9 8 7 12 12 C 1.46501 * 119.99828 * 180.02562 * 11 9 8 13 13 H 1.09005 * 109.49275 * 324.92747 * 12 11 9 14 14 C 1.53036 * 109.52069 * 204.85316 * 12 11 9 15 15 C 1.53041 * 109.53554 * 301.38881 * 14 12 11 16 16 C 1.53622 * 109.24380 * 298.51477 * 15 14 12 17 17 H 1.09000 * 109.73931 * 295.11518 * 16 15 14 18 18 C 1.53004 * 109.66053 * 174.54817 * 16 15 14 19 19 N 1.46920 * 108.54182 * 54.85945 * 16 15 14 20 20 C 1.36938 * 120.63045 * 126.37020 * 19 16 15 21 21 H 1.08000 * 120.00006 * 330.79168 * 20 19 16 22 22 C 1.38814 * 119.99709 * 150.79668 * 20 19 16 23 23 N 1.31616 * 120.00357 * 344.76956 * 22 20 19 24 24 Si 1.86800 * 119.99661 * 165.04369 * 22 20 19 25 25 H 1.48497 * 109.47475 * 89.99825 * 24 22 20 26 26 H 1.48505 * 109.47165 * 210.00177 * 24 22 20 27 27 H 1.48503 * 109.47399 * 329.99561 * 24 22 20 28 28 C 1.46929 * 118.73799 * 306.08918 * 19 16 15 29 29 H 1.08997 * 109.47296 * 270.24727 * 1 2 3 30 30 H 1.09008 * 109.46707 * 30.24393 * 1 2 3 31 31 H 1.09001 * 109.47235 * 150.23563 * 1 2 3 32 32 H 1.08002 * 127.33307 * 359.93635 * 3 2 1 33 33 H 1.08999 * 109.47158 * 330.02244 * 8 7 5 34 34 H 1.09000 * 109.46830 * 210.02599 * 8 7 5 35 35 H 0.96995 * 120.00226 * 359.97438 * 11 9 8 36 36 H 1.08995 * 109.46410 * 61.41364 * 14 12 11 37 37 H 1.08998 * 109.45716 * 181.38685 * 14 12 11 38 38 H 1.09006 * 109.49722 * 58.59647 * 15 14 12 39 39 H 1.09010 * 109.49458 * 178.68541 * 15 14 12 40 40 H 1.08996 * 109.47344 * 300.95238 * 18 16 15 41 41 H 1.09003 * 109.47024 * 60.95233 * 18 16 15 42 42 H 1.09000 * 109.46854 * 180.94782 * 18 16 15 43 43 H 0.97002 * 119.99839 * 180.02562 * 23 22 20 44 44 H 1.08998 * 109.58909 * 173.65261 * 28 19 16 45 45 H 1.08999 * 109.58577 * 293.93308 * 28 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2026 1.1285 0.0000 4 16 3.9034 0.6303 -0.0057 5 6 3.5606 -1.0573 -0.0007 6 8 4.3672 -1.9704 -0.0024 7 7 2.2222 -1.1604 0.0055 8 6 1.5576 -2.4660 0.0106 9 6 1.3355 -2.9111 1.4332 10 8 1.6963 -2.2068 2.3522 11 7 0.7359 -4.0918 1.6841 12 6 0.5195 -4.5242 3.0670 13 1 1.3524 -4.1917 3.6866 14 6 0.4236 -6.0507 3.1164 15 6 -0.7250 -6.5206 2.2208 16 6 -2.0461 -5.9363 2.7434 17 1 -2.2636 -6.3433 3.7309 18 6 -3.1813 -6.2875 1.7794 19 7 -1.9088 -4.4762 2.8315 20 6 -2.8148 -3.6520 2.2191 21 1 -3.3257 -3.9800 1.3259 22 6 -3.0764 -2.3948 2.7463 23 7 -2.6990 -2.1041 3.9732 24 14 -3.9709 -1.1181 1.7170 25 1 -5.4343 -1.2417 1.9371 26 1 -3.5234 0.2407 2.1152 27 1 -3.6660 -1.3384 0.2804 28 6 -0.7844 -3.9172 3.5944 29 1 -0.3634 0.0044 1.0276 30 1 -0.3633 0.8879 -0.5177 31 1 -0.3634 -0.8921 -0.5102 32 1 1.8153 2.1367 -0.0010 33 1 2.1838 -3.1945 -0.5045 34 1 0.5976 -2.3870 -0.4995 35 1 0.4470 -4.6549 0.9490 36 1 1.3594 -6.4850 2.7647 37 1 0.2380 -6.3698 4.1420 38 1 -0.5525 -6.1806 1.1996 39 1 -0.7779 -7.6093 2.2382 40 1 -2.9571 -5.8844 0.7919 41 1 -3.2815 -7.3710 1.7155 42 1 -4.1139 -5.8572 2.1444 43 1 -2.8822 -1.2257 4.3417 44 1 -0.7603 -2.8347 3.4695 45 1 -0.9024 -4.1606 4.6503 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072062011.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:46 Heat of formation + Delta-G solvation = -11.346303 kcal Electronic energy + Delta-G solvation = -29175.673015 eV Core-core repulsion = 25321.024088 eV Total energy + Delta-G solvation = -3854.648927 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -41.12771 -39.29402 -37.65189 -37.33386 -34.19890 -32.81699 -32.50802 -31.06129 -30.03709 -29.70878 -26.86376 -26.02502 -24.99256 -23.68337 -22.24135 -21.45256 -20.49868 -20.06088 -18.82954 -17.99579 -17.53830 -17.09952 -16.34085 -15.69969 -15.43117 -15.10894 -14.95667 -14.55268 -14.14253 -13.99427 -13.92981 -13.60852 -13.58436 -13.41483 -13.18306 -12.94653 -12.68123 -12.47752 -12.10681 -11.78750 -11.49330 -11.29926 -11.23029 -11.12210 -11.04680 -10.94540 -10.78440 -10.46925 -10.41522 -10.07387 -10.04391 -9.97836 -9.60082 -9.52423 -9.20155 -8.53869 -8.47274 -7.88440 -6.67638 -5.82553 -3.26950 0.99835 1.45769 1.81964 2.20103 2.74063 2.96652 3.26074 3.32934 3.36170 3.63499 4.40370 4.51857 4.77949 4.97153 5.01295 5.16517 5.24485 5.28775 5.38426 5.41775 5.44874 5.53609 5.57322 5.58201 5.84484 5.95319 6.04884 6.09320 6.18278 6.27619 6.28433 6.38710 6.46295 6.54420 6.61667 6.75763 6.82000 6.97871 7.05383 7.30457 7.34028 7.62338 7.74859 7.95032 8.41014 8.62147 9.15451 9.80152 10.37241 11.25088 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012162 B = 0.004729 C = 0.003750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.676430 B = 5919.434106 C = 7463.906315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.123 3.877 3 C -0.246 4.246 4 S -0.005 6.005 5 C 0.488 3.512 6 O -0.478 6.478 7 N -0.512 5.512 8 C 0.078 3.922 9 C 0.500 3.500 10 O -0.532 6.532 11 N -0.694 5.694 12 C 0.120 3.880 13 H 0.075 0.925 14 C -0.119 4.119 15 C -0.130 4.130 16 C 0.165 3.835 17 H 0.025 0.975 18 C -0.135 4.135 19 N -0.583 5.583 20 C -0.251 4.251 21 H 0.068 0.932 22 C 0.006 3.994 23 N -0.897 5.897 24 Si 0.890 3.110 25 H -0.288 1.288 26 H -0.288 1.288 27 H -0.279 1.279 28 C 0.163 3.837 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.191 0.809 33 H 0.118 0.882 34 H 0.124 0.876 35 H 0.396 0.604 36 H 0.051 0.949 37 H 0.071 0.929 38 H 0.055 0.945 39 H 0.053 0.947 40 H 0.051 0.949 41 H 0.037 0.963 42 H 0.060 0.940 43 H 0.253 0.747 44 H 0.097 0.903 45 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.988 -0.374 -9.656 11.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.012 3.988 3 C -0.384 4.384 4 S 0.238 5.762 5 C 0.171 3.829 6 O -0.358 6.358 7 N -0.232 5.232 8 C -0.051 4.051 9 C 0.283 3.717 10 O -0.408 6.408 11 N -0.345 5.345 12 C 0.014 3.986 13 H 0.093 0.907 14 C -0.157 4.157 15 C -0.169 4.169 16 C 0.058 3.942 17 H 0.043 0.957 18 C -0.193 4.193 19 N -0.306 5.306 20 C -0.380 4.380 21 H 0.086 0.914 22 C -0.193 4.193 23 N -0.541 5.541 24 Si 0.720 3.280 25 H -0.215 1.215 26 H -0.214 1.214 27 H -0.205 1.205 28 C 0.036 3.964 29 H 0.113 0.887 30 H 0.108 0.892 31 H 0.096 0.904 32 H 0.208 0.792 33 H 0.136 0.864 34 H 0.142 0.858 35 H 0.230 0.770 36 H 0.070 0.930 37 H 0.089 0.911 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.056 0.944 42 H 0.080 0.920 43 H 0.064 0.936 44 H 0.115 0.885 45 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 7.894 0.362 -8.888 11.893 hybrid contribution -1.948 -0.296 -0.626 2.068 sum 5.946 0.066 -9.514 11.220 Atomic orbital electron populations 1.20873 0.86322 1.04210 1.05160 1.19450 0.95910 0.84676 0.98715 1.24760 0.92760 1.01177 1.19681 1.84890 1.09019 1.01054 1.81254 1.21499 0.83533 0.95709 0.82166 1.90934 1.48717 1.42528 1.53665 1.45544 1.06204 1.06830 1.64627 1.21771 1.01063 0.84805 0.97501 1.20373 0.78572 0.82211 0.90500 1.90729 1.51035 1.53382 1.45674 1.45742 1.59287 1.19960 1.09536 1.21796 1.00986 0.93843 0.81951 0.90744 1.21690 0.98075 0.95024 1.00912 1.22136 0.97020 0.98911 0.98839 1.20558 0.91563 0.86311 0.95784 0.95739 1.21787 0.99603 0.98232 0.99635 1.44070 1.26831 0.98753 1.60971 1.19073 1.18050 0.96125 1.04789 0.91445 1.25057 0.99347 0.99729 0.95199 1.69986 1.49923 1.21271 1.12953 0.86499 0.79871 0.81730 0.79892 1.21475 1.21444 1.20475 1.21170 0.82492 1.00226 0.92505 0.88693 0.89174 0.90389 0.79195 0.86364 0.85845 0.76954 0.92986 0.91075 0.92682 0.92865 0.92986 0.94423 0.92050 0.93628 0.88468 0.95729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.32 9.69 36.01 0.35 -0.97 16 2 C 0.12 1.66 6.59 -82.51 -0.54 1.12 16 3 C -0.25 -2.96 11.25 28.83 0.32 -2.64 16 4 S 0.00 -0.06 22.97 -107.50 -2.47 -2.53 16 5 C 0.49 8.12 8.27 53.82 0.45 8.56 16 6 O -0.48 -9.11 17.55 5.07 0.09 -9.02 16 7 N -0.51 -7.74 2.09 -118.56 -0.25 -7.98 16 8 C 0.08 1.08 5.75 -5.19 -0.03 1.05 16 9 C 0.50 8.91 7.86 -10.98 -0.09 8.82 16 10 O -0.53 -11.76 16.09 5.56 0.09 -11.67 16 11 N -0.69 -11.53 4.92 -53.69 -0.26 -11.80 16 12 C 0.12 2.20 2.81 -67.81 -0.19 2.01 16 13 H 0.07 1.46 7.58 -51.93 -0.39 1.07 16 14 C -0.12 -1.81 5.58 -26.69 -0.15 -1.96 16 15 C -0.13 -1.93 5.23 -26.39 -0.14 -2.07 16 16 C 0.16 3.04 3.51 -67.38 -0.24 2.81 16 17 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 18 C -0.14 -2.28 7.95 37.16 0.30 -1.98 16 19 N -0.58 -12.93 2.90 -164.53 -0.48 -13.41 16 20 C -0.25 -6.11 8.60 -15.06 -0.13 -6.24 16 21 H 0.07 1.60 6.21 -52.49 -0.33 1.28 16 22 C 0.01 0.15 4.95 -17.43 -0.09 0.06 16 23 N -0.90 -24.95 11.14 55.49 0.62 -24.33 16 24 Si 0.89 19.98 29.58 -169.99 -5.03 14.95 16 25 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 26 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 27 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 28 C 0.16 3.68 4.89 -3.71 -0.02 3.67 16 29 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 30 H 0.09 0.86 8.10 -51.92 -0.42 0.44 16 31 H 0.08 0.92 6.18 -51.93 -0.32 0.59 16 32 H 0.19 1.68 8.06 -52.49 -0.42 1.26 16 33 H 0.12 1.43 7.80 -51.93 -0.41 1.03 16 34 H 0.12 1.40 6.11 -51.93 -0.32 1.08 16 35 H 0.40 5.63 6.78 -40.82 -0.28 5.36 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.05 0.79 6.41 -51.93 -0.33 0.45 16 39 H 0.05 0.69 8.14 -51.92 -0.42 0.27 16 40 H 0.05 0.87 7.45 -51.93 -0.39 0.48 16 41 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.06 1.15 7.62 -51.93 -0.40 0.75 16 43 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 44 H 0.10 2.59 6.06 -51.93 -0.31 2.27 16 45 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 371.18 15.07 5.59 5.59 Total: -1.00 -31.90 371.18 -8.70 -40.60 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -6.41 Total: 7.37 kcal Atomic # 6 Polarization: 12.42 SS G_CDS: -0.19 Total: 12.23 kcal Atomic # 7 Polarization: -57.14 SS G_CDS: -0.37 Total: -57.52 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: 0.18 Total: -20.70 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.03 Total: 14.95 kcal Atomic # 16 Polarization: -0.06 SS G_CDS: -2.47 Total: -2.53 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.90 -8.70 -40.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072062011.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.255 kcal (2) G-P(sol) polarization free energy of solvation -31.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds