Wall clock time and date at job start Tue Mar 31 2020 22:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.32571 * 121.64987 * 2 1 4 4 S 1.77228 * 105.32140 * 180.19171 * 3 2 1 5 5 C 1.72208 * 94.84573 * 359.76535 * 4 3 2 6 6 O 1.21830 * 127.05957 * 179.97438 * 5 4 3 7 7 N 1.34240 * 105.88662 * 359.97438 * 5 4 3 8 8 C 1.46504 * 121.38010 * 179.97438 * 7 5 4 9 9 C 1.50704 * 109.46971 * 90.02757 * 8 7 5 10 10 O 1.21276 * 119.99854 * 0.02562 * 9 8 7 11 11 N 1.34781 * 119.99668 * 180.02562 * 9 8 7 12 12 C 1.46501 * 119.99828 * 180.02562 * 11 9 8 13 13 H 1.09005 * 109.49275 * 324.92747 * 12 11 9 14 14 C 1.53036 * 109.52069 * 204.85316 * 12 11 9 15 15 C 1.53041 * 109.53554 * 301.38881 * 14 12 11 16 16 C 1.53622 * 109.24380 * 298.51477 * 15 14 12 17 17 H 1.09000 * 109.73931 * 295.11518 * 16 15 14 18 18 C 1.53004 * 109.66053 * 174.54817 * 16 15 14 19 19 N 1.46920 * 108.54182 * 54.85945 * 16 15 14 20 20 C 1.36938 * 120.63045 * 126.37020 * 19 16 15 21 21 H 1.08000 * 120.00006 * 330.79168 * 20 19 16 22 22 C 1.38814 * 119.99709 * 150.79668 * 20 19 16 23 23 N 1.31616 * 120.00357 * 344.76956 * 22 20 19 24 24 Si 1.86800 * 119.99661 * 165.04369 * 22 20 19 25 25 H 1.48497 * 109.47475 * 89.99825 * 24 22 20 26 26 H 1.48505 * 109.47165 * 210.00177 * 24 22 20 27 27 H 1.48503 * 109.47399 * 329.99561 * 24 22 20 28 28 C 1.46929 * 118.73799 * 306.08918 * 19 16 15 29 29 H 1.08997 * 109.47296 * 270.24727 * 1 2 3 30 30 H 1.09008 * 109.46707 * 30.24393 * 1 2 3 31 31 H 1.09001 * 109.47235 * 150.23563 * 1 2 3 32 32 H 1.08002 * 127.33307 * 359.93635 * 3 2 1 33 33 H 1.08999 * 109.47158 * 330.02244 * 8 7 5 34 34 H 1.09000 * 109.46830 * 210.02599 * 8 7 5 35 35 H 0.96995 * 120.00226 * 359.97438 * 11 9 8 36 36 H 1.08995 * 109.46410 * 61.41364 * 14 12 11 37 37 H 1.08998 * 109.45716 * 181.38685 * 14 12 11 38 38 H 1.09006 * 109.49722 * 58.59647 * 15 14 12 39 39 H 1.09010 * 109.49458 * 178.68541 * 15 14 12 40 40 H 1.08996 * 109.47344 * 300.95238 * 18 16 15 41 41 H 1.09003 * 109.47024 * 60.95233 * 18 16 15 42 42 H 1.09000 * 109.46854 * 180.94782 * 18 16 15 43 43 H 0.97002 * 119.99839 * 180.02562 * 23 22 20 44 44 H 1.08998 * 109.58909 * 173.65261 * 28 19 16 45 45 H 1.08999 * 109.58577 * 293.93308 * 28 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2026 1.1285 0.0000 4 16 3.9034 0.6303 -0.0057 5 6 3.5606 -1.0573 -0.0007 6 8 4.3672 -1.9704 -0.0024 7 7 2.2222 -1.1604 0.0055 8 6 1.5576 -2.4660 0.0106 9 6 1.3355 -2.9111 1.4332 10 8 1.6963 -2.2068 2.3522 11 7 0.7359 -4.0918 1.6841 12 6 0.5195 -4.5242 3.0670 13 1 1.3524 -4.1917 3.6866 14 6 0.4236 -6.0507 3.1164 15 6 -0.7250 -6.5206 2.2208 16 6 -2.0461 -5.9363 2.7434 17 1 -2.2636 -6.3433 3.7309 18 6 -3.1813 -6.2875 1.7794 19 7 -1.9088 -4.4762 2.8315 20 6 -2.8148 -3.6520 2.2191 21 1 -3.3257 -3.9800 1.3259 22 6 -3.0764 -2.3948 2.7463 23 7 -2.6990 -2.1041 3.9732 24 14 -3.9709 -1.1181 1.7170 25 1 -5.4343 -1.2417 1.9371 26 1 -3.5234 0.2407 2.1152 27 1 -3.6660 -1.3384 0.2804 28 6 -0.7844 -3.9172 3.5944 29 1 -0.3634 0.0044 1.0276 30 1 -0.3633 0.8879 -0.5177 31 1 -0.3634 -0.8921 -0.5102 32 1 1.8153 2.1367 -0.0010 33 1 2.1838 -3.1945 -0.5045 34 1 0.5976 -2.3870 -0.4995 35 1 0.4470 -4.6549 0.9490 36 1 1.3594 -6.4850 2.7647 37 1 0.2380 -6.3698 4.1420 38 1 -0.5525 -6.1806 1.1996 39 1 -0.7779 -7.6093 2.2382 40 1 -2.9571 -5.8844 0.7919 41 1 -3.2815 -7.3710 1.7155 42 1 -4.1139 -5.8572 2.1444 43 1 -2.8822 -1.2257 4.3417 44 1 -0.7603 -2.8347 3.4695 45 1 -0.9024 -4.1606 4.6503 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072062011.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:45 Heat of formation + Delta-G solvation = -32.365975 kcal Electronic energy + Delta-G solvation = -29176.584496 eV Core-core repulsion = 25321.024088 eV Total energy + Delta-G solvation = -3855.560409 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.30583 -40.73694 -39.10831 -38.61471 -35.79566 -34.49062 -33.65297 -32.41675 -31.72150 -30.92711 -28.10619 -27.50808 -26.60521 -24.86810 -23.87451 -22.72687 -21.99748 -21.28748 -20.39628 -19.10659 -18.84956 -18.37045 -18.02267 -17.19553 -16.82474 -16.42392 -16.41758 -15.90481 -15.68171 -15.44222 -15.22415 -14.95681 -14.78510 -14.62047 -14.51990 -14.42149 -14.03460 -13.78753 -13.48366 -13.01413 -12.92890 -12.85344 -12.65560 -12.57895 -12.46454 -12.40623 -12.16292 -12.07414 -12.03776 -11.57624 -11.33911 -11.27416 -11.18541 -11.04261 -10.52648 -10.43682 -9.99849 -8.98843 -8.54459 -7.76286 -5.22710 -0.14848 0.35824 0.76593 1.03848 1.46806 1.49613 1.58074 1.58602 1.64556 2.31862 2.56616 3.39310 3.47085 3.64508 3.70835 3.75576 3.98198 4.02137 4.09855 4.17610 4.20031 4.48590 4.51055 4.57477 4.61894 4.64759 4.73526 4.82182 4.84269 4.96829 5.03874 5.09041 5.11882 5.17228 5.27347 5.32038 5.58312 5.62211 5.66432 5.67521 5.75062 5.77981 6.15053 6.48325 6.59081 7.22587 7.27156 7.96412 8.49126 9.29245 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012162 B = 0.004729 C = 0.003750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.676430 B = 5919.434106 C = 7463.906315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.097 3.903 3 C -0.226 4.226 4 S 0.016 5.984 5 C 0.467 3.533 6 O -0.518 6.518 7 N -0.515 5.515 8 C 0.082 3.918 9 C 0.494 3.506 10 O -0.583 6.583 11 N -0.683 5.683 12 C 0.130 3.870 13 H 0.055 0.945 14 C -0.111 4.111 15 C -0.117 4.117 16 C 0.153 3.847 17 H 0.008 0.992 18 C -0.127 4.127 19 N -0.593 5.593 20 C -0.237 4.237 21 H 0.080 0.920 22 C -0.054 4.054 23 N -0.940 5.940 24 Si 0.946 3.054 25 H -0.297 1.297 26 H -0.299 1.299 27 H -0.250 1.250 28 C 0.176 3.824 29 H 0.060 0.940 30 H 0.123 0.877 31 H 0.084 0.916 32 H 0.227 0.773 33 H 0.139 0.861 34 H 0.153 0.847 35 H 0.411 0.589 36 H 0.081 0.919 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.087 0.913 40 H 0.057 0.943 41 H 0.072 0.928 42 H 0.034 0.966 43 H 0.241 0.759 44 H 0.053 0.947 45 H -0.011 1.011 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.794 -1.323 -12.795 14.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.012 4.012 3 C -0.363 4.363 4 S 0.259 5.741 5 C 0.151 3.849 6 O -0.402 6.402 7 N -0.234 5.234 8 C -0.047 4.047 9 C 0.279 3.721 10 O -0.463 6.463 11 N -0.335 5.335 12 C 0.023 3.977 13 H 0.073 0.927 14 C -0.149 4.149 15 C -0.156 4.156 16 C 0.048 3.952 17 H 0.026 0.974 18 C -0.184 4.184 19 N -0.316 5.316 20 C -0.368 4.368 21 H 0.098 0.902 22 C -0.249 4.249 23 N -0.587 5.587 24 Si 0.775 3.225 25 H -0.224 1.224 26 H -0.226 1.226 27 H -0.174 1.174 28 C 0.048 3.952 29 H 0.078 0.922 30 H 0.142 0.858 31 H 0.103 0.897 32 H 0.243 0.757 33 H 0.157 0.843 34 H 0.171 0.829 35 H 0.249 0.751 36 H 0.100 0.900 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.105 0.895 40 H 0.076 0.924 41 H 0.091 0.909 42 H 0.053 0.947 43 H 0.050 0.950 44 H 0.072 0.928 45 H 0.007 0.993 Dipole moment (debyes) X Y Z Total from point charges 7.670 -0.625 -12.091 14.333 hybrid contribution -1.916 -0.003 0.423 1.962 sum 5.754 -0.629 -11.668 13.025 Atomic orbital electron populations 1.20877 0.85476 1.06284 1.03434 1.19768 0.96556 0.84618 1.00248 1.25353 0.91491 1.02384 1.17109 1.84816 1.10165 0.98846 1.80317 1.21927 0.83890 0.96636 0.82488 1.90896 1.49693 1.43993 1.55585 1.45645 1.06012 1.07702 1.64048 1.21892 1.02940 0.85063 0.94779 1.21128 0.77474 0.81723 0.91777 1.90706 1.53058 1.54814 1.47689 1.45616 1.58727 1.19981 1.09178 1.21446 0.97475 0.96103 0.82635 0.92711 1.21660 0.99889 0.92030 1.01366 1.22021 0.93965 1.00689 0.98936 1.20852 0.94684 0.83854 0.95859 0.97426 1.21709 0.97361 1.00426 0.98953 1.44276 1.26399 1.00506 1.60461 1.19445 1.16803 0.95994 1.04527 0.90204 1.25786 1.01068 1.01984 0.96051 1.70194 1.52582 1.20842 1.15072 0.85588 0.77895 0.78948 0.80068 1.22423 1.22578 1.17399 1.20792 0.85251 0.98003 0.91105 0.92165 0.85846 0.89705 0.75657 0.84278 0.82927 0.75138 0.90006 0.91301 0.91233 0.89463 0.92407 0.90932 0.94689 0.94988 0.92845 0.99327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.34 9.69 71.24 0.69 -1.65 16 2 C 0.10 2.47 6.59 40.71 0.27 2.74 16 3 C -0.23 -4.90 11.25 66.67 0.75 -4.15 16 4 S 0.02 0.41 22.97 -56.49 -1.30 -0.89 16 5 C 0.47 15.33 8.27 129.87 1.07 16.41 16 6 O -0.52 -19.90 17.55 -4.76 -0.08 -19.98 16 7 N -0.51 -15.04 2.09 -647.48 -1.35 -16.39 16 8 C 0.08 2.15 5.75 85.63 0.49 2.65 16 9 C 0.49 17.56 7.86 87.66 0.69 18.24 16 10 O -0.58 -26.76 16.09 -3.02 -0.05 -26.81 16 11 N -0.68 -22.06 4.92 -442.17 -2.17 -24.23 16 12 C 0.13 4.80 2.81 45.07 0.13 4.93 16 13 H 0.05 2.24 7.58 -2.38 -0.02 2.23 16 14 C -0.11 -3.15 5.58 30.62 0.17 -2.98 16 15 C -0.12 -3.07 5.23 30.82 0.16 -2.90 16 16 C 0.15 5.41 3.51 45.12 0.16 5.57 16 17 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 18 C -0.13 -3.93 7.95 71.98 0.57 -3.36 16 19 N -0.59 -26.40 2.90 -674.44 -1.96 -28.35 16 20 C -0.24 -11.54 8.60 84.03 0.72 -10.82 16 21 H 0.08 3.65 6.21 -2.91 -0.02 3.64 16 22 C -0.05 -2.85 4.95 84.86 0.42 -2.43 16 23 N -0.94 -55.06 11.14 21.65 0.24 -54.82 16 24 Si 0.95 41.38 29.58 68.60 2.03 43.41 16 25 H -0.30 -13.28 7.11 99.48 0.71 -12.58 16 26 H -0.30 -13.46 7.11 99.48 0.71 -12.75 16 27 H -0.25 -9.62 7.11 99.48 0.71 -8.92 16 28 C 0.18 8.32 4.89 86.36 0.42 8.74 16 29 H 0.06 1.83 8.14 -2.39 -0.02 1.82 16 30 H 0.12 1.93 8.10 -2.38 -0.02 1.92 16 31 H 0.08 1.78 6.18 -2.39 -0.01 1.77 16 32 H 0.23 3.11 8.06 -2.91 -0.02 3.09 16 33 H 0.14 3.08 7.80 -2.39 -0.02 3.06 16 34 H 0.15 3.06 6.11 -2.39 -0.01 3.05 16 35 H 0.41 10.58 6.78 -92.71 -0.63 9.95 16 36 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.07 1.66 6.41 -2.38 -0.02 1.64 16 39 H 0.09 1.80 8.14 -2.38 -0.02 1.78 16 40 H 0.06 1.72 7.45 -2.39 -0.02 1.70 16 41 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.03 1.25 7.62 -2.39 -0.02 1.23 16 43 H 0.24 14.08 8.31 -92.71 -0.77 13.31 16 44 H 0.05 3.02 6.06 -2.39 -0.01 3.01 16 45 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 Total: -1.00 -75.36 371.18 2.47 -72.89 By element: Atomic # 1 Polarization: 23.82 SS G_CDS: 0.39 Total: 24.21 kcal Atomic # 6 Polarization: 24.25 SS G_CDS: 6.72 Total: 30.97 kcal Atomic # 7 Polarization: -118.55 SS G_CDS: -5.25 Total: -123.80 kcal Atomic # 8 Polarization: -46.66 SS G_CDS: -0.13 Total: -46.79 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.41 kcal Atomic # 16 Polarization: 0.41 SS G_CDS: -1.30 Total: -0.89 kcal Total: -75.36 2.47 -72.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072062011.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.525 kcal (2) G-P(sol) polarization free energy of solvation -75.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds