Wall clock time and date at job start Tue Mar 31 2020 22:13:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42910 * 1
3 3 C 1.42897 * 113.99688 * 2 1
4 4 C 1.50693 * 109.47407 * 179.97438 * 3 2 1
5 5 N 1.29434 * 124.80566 * 90.02243 * 4 3 2
6 6 C 1.30939 * 117.36344 * 179.73969 * 5 4 3
7 7 C 1.50708 * 122.90071 * 179.97438 * 6 5 4
8 8 C 1.35655 * 114.19519 * 0.02562 * 6 5 4
9 9 C 1.46683 * 126.13353 * 180.02562 * 8 6 5
10 10 O 1.21685 * 119.99616 * 359.97438 * 9 8 6
11 11 N 1.34771 * 120.00462 * 179.97438 * 9 8 6
12 12 C 1.46499 * 120.00196 * 180.02562 * 11 9 8
13 13 H 1.08997 * 110.64269 * 323.30448 * 12 11 9
14 14 C 1.55155 * 110.72205 * 86.45510 * 12 11 9
15 15 C 1.54905 * 101.58264 * 153.86655 * 14 12 11
16 16 N 1.47431 * 104.83191 * 322.98624 * 15 14 12
17 17 C 1.36933 * 125.64927 * 204.16512 * 16 15 14
18 18 H 1.07996 * 119.99967 * 179.97438 * 17 16 15
19 19 C 1.38818 * 120.00267 * 359.97438 * 17 16 15
20 20 N 1.31620 * 119.99652 * 359.97438 * 19 17 16
21 21 Si 1.86800 * 120.00168 * 180.02562 * 19 17 16
22 22 H 1.48497 * 109.47274 * 89.99882 * 21 19 17
23 23 H 1.48501 * 109.46507 * 209.99954 * 21 19 17
24 24 H 1.48496 * 109.46882 * 329.99654 * 21 19 17
25 25 C 1.47018 * 108.70099 * 24.13121 * 16 15 14
26 26 H 1.08998 * 109.88146 * 239.52123 * 25 16 15
27 27 C 1.53002 * 109.88126 * 118.35807 * 25 16 15
28 28 S 1.70953 * 124.80453 * 269.72481 * 4 3 2
29 29 H 1.08995 * 109.46978 * 299.99361 * 1 2 3
30 30 H 1.08999 * 109.47135 * 60.00293 * 1 2 3
31 31 H 1.08998 * 109.46801 * 179.97438 * 1 2 3
32 32 H 1.09009 * 109.46981 * 59.99660 * 3 2 1
33 33 H 1.09002 * 109.47514 * 300.00580 * 3 2 1
34 34 H 1.09006 * 109.46615 * 89.97385 * 7 6 5
35 35 H 1.08991 * 109.46790 * 209.97126 * 7 6 5
36 36 H 1.08993 * 109.47246 * 329.97769 * 7 6 5
37 37 H 0.97004 * 119.99745 * 359.97438 * 11 9 8
38 38 H 1.08998 * 111.00263 * 271.93638 * 14 12 11
39 39 H 1.09001 * 111.00591 * 35.75353 * 14 12 11
40 40 H 1.08995 * 110.37093 * 81.82575 * 15 14 12
41 41 H 1.09006 * 110.36926 * 204.15411 * 15 14 12
42 42 H 0.97000 * 120.00085 * 179.97438 * 20 19 17
43 43 H 1.08996 * 109.47138 * 302.18868 * 27 25 16
44 44 H 1.08998 * 109.47031 * 62.19041 * 27 25 16
45 45 H 1.09003 * 109.47132 * 182.18919 * 27 25 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4291 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 6 3.5125 1.1866 0.0006
5 7 4.2494 1.1286 -1.0618
6 6 5.5441 1.0314 -0.8917
7 6 6.5172 0.9548 -2.0399
8 6 5.9337 1.0046 0.4075
9 6 7.3134 0.9022 0.8948
10 8 8.2346 0.8313 0.1029
11 7 7.5608 0.8865 2.2195
12 6 8.9389 0.7848 2.7061
13 1 9.5258 0.1285 2.0637
14 6 9.5927 2.1887 2.8008
15 6 10.6589 1.9617 3.9014
16 7 10.0188 1.0465 4.8639
17 6 10.3492 0.9211 6.1868
18 1 9.8177 0.2190 6.8119
19 6 11.3673 1.6966 6.7245
20 7 12.0154 2.5520 5.9626
21 14 11.8184 1.5250 8.5291
22 1 12.8679 0.4854 8.6803
23 1 12.3308 2.8231 9.0367
24 1 10.6152 1.1304 9.3047
25 6 8.9666 0.2914 4.1682
26 1 8.0023 0.4780 4.6408
27 6 9.2874 -1.2041 4.2066
28 16 4.4852 1.1167 1.4047
29 1 -0.3633 0.5137 0.8900
30 1 -0.3633 0.5138 -0.8900
31 1 -0.3633 -1.0277 -0.0005
32 1 1.6885 1.8464 0.8900
33 1 1.6885 1.8465 -0.8899
34 1 6.8287 1.9612 -2.3199
35 1 7.3896 0.3751 -1.7387
36 1 6.0370 0.4731 -2.8916
37 1 6.8265 0.9434 2.8507
38 1 10.0596 2.4667 1.8560
39 1 8.8647 2.9387 3.1101
40 1 11.5510 1.5017 3.4763
41 1 10.9114 2.9051 4.3854
42 1 12.7266 3.0941 6.3383
43 1 10.2614 -1.3787 3.7496
44 1 9.3052 -1.5454 5.2417
45 1 8.5239 -1.7538 3.6560
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001089008064.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:13:15
Heat of formation + Delta-G solvation = -27.565252 kcal
Electronic energy + Delta-G solvation = -26938.687178 eV
Core-core repulsion = 23083.334944 eV
Total energy + Delta-G solvation = -3855.352234 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-41.60994 -40.65570 -39.18574 -38.72724 -35.70945 -33.96366 -33.48773 -32.08193
-30.79272 -29.81964 -29.26240 -26.98267 -26.43974 -25.82098 -23.88429 -23.13507
-21.93214 -21.68129 -20.44171 -19.26180 -18.67038 -18.04069 -17.64412 -17.48191
-16.80013 -16.58658 -16.44793 -16.26425 -15.75404 -15.48340 -15.36282 -15.01719
-14.86799 -14.39243 -14.01492 -13.94156 -13.75284 -13.52212 -13.34682 -13.27862
-13.25213 -12.93217 -12.76177 -12.61026 -12.44087 -12.35573 -12.25041 -12.11357
-11.97001 -11.58043 -11.47408 -11.27762 -10.86513 -10.75627 -10.72511 -10.68223
-10.16672 -9.89174 -8.89973 -7.74143 -5.19190 -0.98539 0.01264 0.40664
1.20202 1.49280 1.50748 1.59084 1.89832 1.97806 2.52035 2.57716
3.19427 3.36415 3.50091 3.71422 3.73089 3.80453 3.93101 3.98432
4.16734 4.18083 4.32700 4.48505 4.53809 4.59941 4.60130 4.61506
4.64611 4.70733 4.79907 4.84296 4.90996 4.91513 5.01822 5.08629
5.26482 5.34461 5.50602 5.55087 5.60431 5.80642 6.03890 6.29598
6.31105 6.48051 6.99015 7.11766 7.79115 8.42521 9.27786
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.018673 B = 0.002479 C = 0.002297
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1499.113530 B =11294.080780 C =12186.431158
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.026 3.974
2 O -0.411 6.411
3 C 0.135 3.865
4 C 0.050 3.950
5 N -0.481 5.481
6 C 0.140 3.860
7 C -0.087 4.087
8 C -0.319 4.319
9 C 0.598 3.402
10 O -0.550 6.550
11 N -0.700 5.700
12 C 0.154 3.846
13 H 0.087 0.913
14 C -0.138 4.138
15 C 0.158 3.842
16 N -0.613 5.613
17 C -0.226 4.226
18 H 0.086 0.914
19 C -0.069 4.069
20 N -0.951 5.951
21 Si 0.978 3.022
22 H -0.291 1.291
23 H -0.297 1.297
24 H -0.267 1.267
25 C 0.151 3.849
26 H 0.051 0.949
27 C -0.147 4.147
28 S 0.243 5.757
29 H 0.063 0.937
30 H 0.056 0.944
31 H 0.097 0.903
32 H 0.107 0.893
33 H 0.096 0.904
34 H 0.086 0.914
35 H 0.087 0.913
36 H 0.086 0.914
37 H 0.407 0.593
38 H 0.069 0.931
39 H 0.068 0.932
40 H -0.012 1.012
41 H 0.078 0.922
42 H 0.246 0.754
43 H 0.038 0.962
44 H 0.049 0.951
45 H 0.069 0.931
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -24.535 -2.560 -12.030 27.445
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.070 4.070
2 O -0.330 6.330
3 C 0.055 3.945
4 C -0.225 4.225
5 N -0.198 5.198
6 C 0.001 3.999
7 C -0.146 4.146
8 C -0.443 4.443
9 C 0.385 3.615
10 O -0.430 6.430
11 N -0.351 5.351
12 C 0.049 3.951
13 H 0.105 0.895
14 C -0.178 4.178
15 C 0.032 3.968
16 N -0.338 5.338
17 C -0.354 4.354
18 H 0.104 0.896
19 C -0.261 4.261
20 N -0.600 5.600
21 Si 0.807 3.193
22 H -0.218 1.218
23 H -0.223 1.223
24 H -0.191 1.191
25 C 0.044 3.956
26 H 0.069 0.931
27 C -0.207 4.207
28 S 0.501 5.499
29 H 0.081 0.919
30 H 0.075 0.925
31 H 0.115 0.885
32 H 0.124 0.876
33 H 0.114 0.886
34 H 0.105 0.895
35 H 0.105 0.895
36 H 0.105 0.895
37 H 0.243 0.757
38 H 0.087 0.913
39 H 0.087 0.913
40 H 0.006 0.994
41 H 0.096 0.904
42 H 0.055 0.945
43 H 0.057 0.943
44 H 0.068 0.932
45 H 0.088 0.912
Dipole moment (debyes) X Y Z Total
from point charges -24.187 -2.666 -11.778 27.034
hybrid contribution 0.978 0.197 0.423 1.084
sum -23.209 -2.469 -11.355 25.956
Atomic orbital electron populations
1.23026 0.77886 1.04329 1.01768 1.87920 1.22567 1.26696 1.95837
1.21084 0.82200 0.86378 1.04837 1.27473 1.01984 1.01323 0.91693
1.66099 1.04351 1.17015 1.32305 1.20871 0.90254 0.94670 0.94113
1.20641 0.96202 1.04099 0.93614 1.25496 0.98499 1.22013 0.98296
1.16818 0.86322 0.76027 0.82370 1.90773 1.45377 1.51383 1.55453
1.45768 1.09191 1.74042 1.06114 1.21824 0.81572 0.97164 0.94574
0.89484 1.23208 0.99024 0.96482 0.99069 1.21681 0.91175 0.96018
0.87925 1.44713 1.38867 1.44136 1.06106 1.19384 1.13719 1.17632
0.84712 0.89638 1.25612 0.99006 0.99330 1.02192 1.70038 1.26296
1.28484 1.35229 0.85074 0.78090 0.76286 0.79855 1.21785 1.22321
1.19143 1.21182 0.92683 0.91879 0.89871 0.93116 1.22132 1.00759
0.96359 1.01411 1.83629 0.94078 1.63050 1.09122 0.91870 0.92494
0.88490 0.87563 0.88587 0.89517 0.89482 0.89534 0.75682 0.91273
0.91317 0.99432 0.90359 0.94452 0.94301 0.93182 0.91168
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.19 11.01 113.37 1.25 1.44 16
2 O -0.41 -6.40 10.69 -148.98 -1.59 -7.99 16
3 C 0.13 1.70 6.51 71.23 0.46 2.16 16
4 C 0.05 0.97 7.02 88.46 0.62 1.59 16
5 N -0.48 -11.57 10.50 -178.29 -1.87 -13.44 16
6 C 0.14 3.60 6.79 42.10 0.29 3.89 16
7 C -0.09 -2.04 9.70 71.24 0.69 -1.35 16
8 C -0.32 -8.16 6.48 23.88 0.15 -8.01 16
9 C 0.60 18.08 7.78 86.45 0.67 18.75 16
10 O -0.55 -19.71 13.99 -4.30 -0.06 -19.77 16
11 N -0.70 -20.19 5.20 -440.88 -2.29 -22.48 16
12 C 0.15 5.43 2.76 46.18 0.13 5.56 16
13 H 0.09 3.28 7.41 -2.39 -0.02 3.26 16
14 C -0.14 -5.44 6.77 31.98 0.22 -5.23 16
15 C 0.16 7.81 5.89 86.85 0.51 8.32 16
16 N -0.61 -30.26 3.13 -668.25 -2.09 -32.34 16
17 C -0.23 -12.11 9.89 84.04 0.83 -11.27 16
18 H 0.09 4.35 7.83 -2.91 -0.02 4.32 16
19 C -0.07 -3.84 5.49 84.86 0.47 -3.37 16
20 N -0.95 -56.12 10.09 21.65 0.22 -55.90 16
21 Si 0.98 44.89 29.55 68.60 2.03 46.92 16
22 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16
23 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16
24 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16
25 C 0.15 5.80 3.48 45.34 0.16 5.96 16
26 H 0.05 1.83 7.69 -2.39 -0.02 1.81 16
27 C -0.15 -5.19 9.14 71.98 0.66 -4.53 16
28 S 0.24 4.45 22.31 -56.49 -1.26 3.19 16
29 H 0.06 0.26 8.14 -2.39 -0.02 0.24 16
30 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16
31 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16
32 H 0.11 0.69 8.14 -2.38 -0.02 0.67 16
33 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16
34 H 0.09 1.91 8.14 -2.38 -0.02 1.89 16
35 H 0.09 2.34 6.01 -2.39 -0.01 2.33 16
36 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16
37 H 0.41 9.79 7.50 -92.71 -0.69 9.09 16
38 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16
39 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16
40 H -0.01 -0.67 8.14 -2.39 -0.02 -0.68 16
41 H 0.08 4.40 5.87 -2.38 -0.01 4.39 16
42 H 0.25 14.19 8.31 -92.71 -0.77 13.41 16
43 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16
44 H 0.05 1.80 8.04 -2.39 -0.02 1.78 16
45 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16
Total: -1.00 -70.05 381.81 0.50 -69.55
By element:
Atomic # 1 Polarization: 18.04 SS G_CDS: 0.32 Total: 18.36 kcal
Atomic # 6 Polarization: 6.80 SS G_CDS: 7.10 Total: 13.90 kcal
Atomic # 7 Polarization: -118.13 SS G_CDS: -6.03 Total: -124.17 kcal
Atomic # 8 Polarization: -26.10 SS G_CDS: -1.65 Total: -27.76 kcal
Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal
Atomic # 16 Polarization: 4.45 SS G_CDS: -1.26 Total: 3.19 kcal
Total: -70.05 0.50 -69.55 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001089008064.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 41.985 kcal
(2) G-P(sol) polarization free energy of solvation -70.049 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.064 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.499 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.550 kcal
(6) G-S(sol) free energy of system = (1) + (5) -27.565 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.72 seconds