Wall clock time and date at job start Tue Mar 31 2020 22:53:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50697 * 1
3 3 N 1.28649 * 124.72145 * 2 1
4 4 C 1.33555 * 115.77065 * 180.02562 * 3 2 1
5 5 C 1.47271 * 123.14741 * 180.02562 * 4 3 2
6 6 O 1.21630 * 120.00109 * 173.64981 * 5 4 3
7 7 N 1.34777 * 119.99282 * 353.64697 * 5 4 3
8 8 C 1.46930 * 120.62708 * 183.20258 * 7 5 4
9 9 C 1.53618 * 108.54237 * 126.36989 * 8 7 5
10 10 C 1.53037 * 109.24436 * 54.85809 * 9 8 7
11 11 N 1.46492 * 109.46440 * 178.48979 * 10 9 8
12 12 C 1.36936 * 120.00496 * 60.06394 * 11 10 9
13 13 H 1.08007 * 119.99627 * 324.79365 * 12 11 10
14 14 C 1.38806 * 120.00339 * 144.78536 * 12 11 10
15 15 N 1.31616 * 120.00077 * 339.44876 * 14 12 11
16 16 Si 1.86802 * 120.00245 * 159.45317 * 14 12 11
17 17 H 1.48500 * 109.47273 * 59.99439 * 16 14 12
18 18 H 1.48491 * 109.47339 * 180.02562 * 16 14 12
19 19 H 1.48508 * 109.46728 * 300.00260 * 16 14 12
20 20 C 1.46504 * 119.99941 * 240.06966 * 11 10 9
21 21 C 1.52997 * 109.47371 * 84.48359 * 20 11 10
22 22 O 1.42904 * 109.47113 * 64.99570 * 21 20 11
23 23 C 1.53043 * 109.53793 * 298.51149 * 10 9 8
24 24 C 1.46917 * 120.63638 * 3.48597 * 7 5 4
25 25 C 1.35212 * 113.71722 * 359.97438 * 4 3 2
26 26 S 1.70770 * 124.72053 * 180.30554 * 2 1 3
27 27 H 1.08999 * 109.46980 * 89.99557 * 1 2 3
28 28 H 1.08996 * 109.47450 * 210.00335 * 1 2 3
29 29 H 1.09004 * 109.47068 * 330.00004 * 1 2 3
30 30 H 1.09000 * 109.58761 * 246.20789 * 8 7 5
31 31 H 1.08999 * 109.58499 * 6.62814 * 8 7 5
32 32 H 1.09004 * 109.63765 * 294.86526 * 9 8 7
33 33 H 1.09000 * 109.43064 * 174.72258 * 9 8 7
34 34 H 1.09008 * 109.44821 * 58.52051 * 10 9 8
35 35 H 0.97002 * 120.00629 * 179.97438 * 15 14 12
36 36 H 1.09004 * 109.46917 * 204.48103 * 20 11 10
37 37 H 1.08994 * 109.47331 * 324.47796 * 20 11 10
38 38 H 1.09000 * 109.47785 * 184.99805 * 21 20 11
39 39 H 1.09001 * 109.47486 * 305.00330 * 21 20 11
40 40 H 0.96699 * 113.99852 * 179.97438 * 22 21 20
41 41 H 1.09001 * 109.49487 * 301.41289 * 23 10 9
42 42 H 1.08999 * 109.52749 * 181.32831 * 23 10 9
43 43 H 1.09002 * 109.58459 * 353.36784 * 24 7 5
44 44 H 1.09001 * 109.59236 * 113.65528 * 24 7 5
45 45 H 1.07999 * 125.58879 * 179.97438 * 25 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2397 1.0574 0.0000
4 6 3.5590 0.8496 -0.0005
5 6 4.5463 1.9424 -0.0001
6 8 5.7309 1.6917 0.1159
7 7 4.1372 3.2201 -0.1282
8 6 5.1140 4.3153 -0.1999
9 6 4.8278 5.1435 -1.4616
10 6 3.3684 5.6038 -1.4425
11 7 3.0998 6.4244 -2.6259
12 6 3.2620 5.8942 -3.8780
13 1 4.0537 5.1838 -4.0652
14 6 2.4088 6.2695 -4.9065
15 7 1.2327 6.7911 -4.6288
16 14 2.9296 6.0343 -6.6850
17 1 3.1862 4.5940 -6.9393
18 1 1.8488 6.5115 -7.5845
19 1 4.1683 6.8112 -6.9448
20 6 2.6578 7.8124 -2.4699
21 6 3.8770 8.7183 -2.2855
22 8 4.6654 8.7042 -3.4772
23 6 2.4463 4.3824 -1.4490
24 6 2.7058 3.5450 -0.1927
25 6 3.9036 -0.4578 -0.0004
26 16 2.4796 -1.4036 -0.0075
27 1 -0.3633 0.0001 -1.0277
28 1 -0.3634 -0.8899 0.5139
29 1 -0.3633 0.8900 0.5138
30 1 5.0208 4.9465 0.6839
31 1 6.1218 3.9032 -0.2524
32 1 5.0055 4.5342 -2.3478
33 1 5.4835 6.0140 -1.4805
34 1 3.1852 6.1922 -0.5433
35 1 0.6365 7.0537 -5.3475
36 1 2.1074 8.1206 -3.3589
37 1 2.0108 7.8917 -1.5964
38 1 3.5457 9.7364 -2.0810
39 1 4.4756 8.3562 -1.4496
40 1 5.4565 9.2585 -3.4320
41 1 2.6465 3.7803 -2.3353
42 1 1.4070 4.7106 -1.4592
43 1 2.1240 2.6245 -0.2406
44 1 2.4196 4.1125 0.6927
45 1 4.9131 -0.8417 -0.0012
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001098459692.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:53:16
Heat of formation + Delta-G solvation = 3.258187 kcal
Electronic energy + Delta-G solvation = -28362.010950 eV
Core-core repulsion = 24507.995321 eV
Total energy + Delta-G solvation = -3854.015629 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 0.87 seconds
Orbital eigenvalues (eV)
-40.78737 -38.87479 -37.42891 -36.08230 -34.53207 -32.56970 -31.90531 -30.54310
-30.20839 -28.58133 -27.67079 -25.76104 -24.45830 -23.08959 -22.39698 -21.24238
-20.27635 -19.85188 -19.25074 -18.24707 -16.55494 -16.33120 -16.19067 -15.75935
-15.56517 -15.00502 -14.74550 -14.44493 -14.31240 -13.82820 -13.66440 -13.64864
-13.14242 -13.10963 -12.89795 -12.70082 -12.47653 -12.42670 -12.18928 -11.92004
-11.73840 -11.46025 -11.09751 -10.86085 -10.68548 -10.61437 -10.43401 -10.02929
-9.97671 -9.92658 -9.85693 -9.76820 -9.46340 -9.08654 -9.04405 -8.79011
-8.29254 -8.22899 -6.44916 -5.63866 -3.15903 0.37636 1.02796 1.40985
1.88331 3.27286 3.44423 3.48625 3.52803 3.59647 3.82661 4.62040
4.65206 4.91442 5.07236 5.16062 5.24037 5.24434 5.35629 5.40674
5.53733 5.59895 5.68709 5.76067 5.77638 5.90275 5.99601 6.10728
6.15910 6.22200 6.38557 6.47797 6.57120 6.68658 6.74860 6.83853
6.89073 7.03869 7.23714 7.28427 7.34416 7.73412 7.77371 7.96200
8.33305 8.51574 8.70419 9.33417 9.98034 10.51972 11.38870
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.013408 B = 0.003507 C = 0.003176
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2087.829616 B = 7982.536715 C = 8814.341430
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.081 4.081
2 C 0.026 3.974
3 N -0.431 5.431
4 C 0.024 3.976
5 C 0.588 3.412
6 O -0.551 6.551
7 N -0.579 5.579
8 C 0.112 3.888
9 C -0.137 4.137
10 C 0.175 3.825
11 N -0.572 5.572
12 C -0.228 4.228
13 H 0.055 0.945
14 C 0.012 3.988
15 N -0.897 5.897
16 Si 0.895 3.105
17 H -0.286 1.286
18 H -0.294 1.294
19 H -0.283 1.283
20 C 0.142 3.858
21 C 0.059 3.941
22 O -0.544 6.544
23 C -0.127 4.127
24 C 0.049 3.951
25 C -0.229 4.229
26 S 0.203 5.797
27 H 0.091 0.909
28 H 0.082 0.918
29 H 0.093 0.907
30 H 0.062 0.938
31 H 0.083 0.917
32 H 0.067 0.933
33 H 0.065 0.935
34 H 0.044 0.956
35 H 0.251 0.749
36 H 0.108 0.892
37 H 0.034 0.966
38 H 0.018 0.982
39 H 0.021 0.979
40 H 0.348 0.652
41 H 0.066 0.934
42 H 0.068 0.932
43 H 0.158 0.842
44 H 0.052 0.948
45 H 0.188 0.812
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.975 -12.189 12.553 17.524
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.141 4.141
2 C -0.252 4.252
3 N -0.147 5.147
4 C -0.110 4.110
5 C 0.373 3.627
6 O -0.430 6.430
7 N -0.309 5.309
8 C -0.011 4.011
9 C -0.177 4.177
10 C 0.067 3.933
11 N -0.291 5.291
12 C -0.357 4.357
13 H 0.072 0.928
14 C -0.186 4.186
15 N -0.542 5.542
16 Si 0.726 3.274
17 H -0.213 1.213
18 H -0.220 1.220
19 H -0.209 1.209
20 C 0.015 3.985
21 C -0.022 4.022
22 O -0.345 6.345
23 C -0.167 4.167
24 C -0.074 4.074
25 C -0.371 4.371
26 S 0.460 5.540
27 H 0.110 0.890
28 H 0.100 0.900
29 H 0.112 0.888
30 H 0.080 0.920
31 H 0.102 0.898
32 H 0.086 0.914
33 H 0.084 0.916
34 H 0.063 0.937
35 H 0.061 0.939
36 H 0.125 0.875
37 H 0.052 0.948
38 H 0.036 0.964
39 H 0.039 0.961
40 H 0.191 0.809
41 H 0.084 0.916
42 H 0.087 0.913
43 H 0.173 0.827
44 H 0.070 0.930
45 H 0.206 0.794
Dipole moment (debyes) X Y Z Total
from point charges -1.470 -13.206 12.286 18.097
hybrid contribution 1.468 1.393 -0.810 2.180
sum -0.002 -11.813 11.476 16.470
Atomic orbital electron populations
1.20506 0.84544 1.04496 1.04519 1.27513 1.02723 0.91651 1.03348
1.66642 1.03270 1.28480 1.16313 1.20513 0.89806 0.93607 1.07113
1.17109 0.86427 0.81898 0.77303 1.90767 1.16439 1.83520 1.52259
1.47983 1.08982 1.04997 1.68960 1.21842 0.92816 0.87735 0.98726
1.22415 0.99946 0.99008 0.96293 1.20363 0.91485 0.91264 0.90163
1.43733 1.78174 1.06235 1.00938 1.18732 1.08252 1.23395 0.85357
0.92782 1.24952 0.94345 1.01056 0.98235 1.69930 1.06759 1.46465
1.31010 0.86493 0.77817 0.77620 0.85501 1.21305 1.21968 1.20938
1.21053 0.91682 0.83618 1.02153 1.23113 0.95321 0.97471 0.86246
1.86862 1.38874 1.70880 1.37846 1.22215 1.00677 0.97445 0.96377
1.23489 0.80186 1.05470 0.98222 1.26506 1.05942 0.96636 1.08032
1.82774 0.94776 1.11514 1.64972 0.89045 0.89965 0.88809 0.92002
0.89835 0.91432 0.91594 0.93737 0.93902 0.87471 0.94769 0.96366
0.96108 0.80889 0.91555 0.91293 0.82711 0.92996 0.79432
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.55 10.46 36.00 0.38 -0.17 16
2 C 0.03 0.26 7.34 -13.61 -0.10 0.16 16
3 N -0.43 -5.87 6.63 -8.51 -0.06 -5.93 16
4 C 0.02 0.35 6.56 -84.52 -0.55 -0.20 16
5 C 0.59 10.39 7.67 -12.59 -0.10 10.29 16
6 O -0.55 -10.80 16.15 5.25 0.08 -10.71 16
7 N -0.58 -10.08 2.97 -173.83 -0.52 -10.59 16
8 C 0.11 1.89 6.45 -3.49 -0.02 1.87 16
9 C -0.14 -2.63 5.32 -26.39 -0.14 -2.77 16
10 C 0.17 3.61 2.59 -67.89 -0.18 3.43 16
11 N -0.57 -13.91 2.34 -165.62 -0.39 -14.30 16
12 C -0.23 -6.22 8.05 -15.06 -0.12 -6.35 16
13 H 0.05 1.54 6.87 -52.48 -0.36 1.18 16
14 C 0.01 0.35 4.95 -17.43 -0.09 0.26 16
15 N -0.90 -25.95 11.32 55.49 0.63 -25.33 16
16 Si 0.90 22.75 29.60 -169.99 -5.03 17.71 16
17 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16
18 H -0.29 -7.45 7.11 56.52 0.40 -7.04 16
19 H -0.28 -7.30 7.11 56.52 0.40 -6.90 16
20 C 0.14 3.32 5.56 -4.04 -0.02 3.30 16
21 C 0.06 1.18 7.39 37.16 0.27 1.45 16
22 O -0.54 -11.68 13.40 -35.23 -0.47 -12.15 16
23 C -0.13 -2.54 5.31 -26.61 -0.14 -2.68 16
24 C 0.05 0.83 6.27 -3.71 -0.02 0.80 16
25 C -0.23 -2.74 10.62 29.65 0.31 -2.42 16
26 S 0.20 1.72 22.92 -107.50 -2.46 -0.75 16
27 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16
28 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16
29 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16
30 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16
31 H 0.08 1.44 7.02 -51.93 -0.36 1.07 16
32 H 0.07 1.47 7.04 -51.93 -0.37 1.11 16
33 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16
34 H 0.04 0.87 7.87 -51.92 -0.41 0.46 16
35 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16
36 H 0.11 2.92 5.38 -51.93 -0.28 2.64 16
37 H 0.03 0.75 8.04 -51.93 -0.42 0.33 16
38 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16
39 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16
40 H 0.35 5.50 9.12 45.56 0.42 5.92 16
41 H 0.07 1.52 7.71 -51.93 -0.40 1.12 16
42 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16
43 H 0.16 2.51 3.46 -95.17 -0.33 2.18 16
44 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16
45 H 0.19 2.05 8.04 -52.49 -0.42 1.62 16
LS Contribution 373.30 15.07 5.63 5.63
Total: -1.00 -33.87 373.30 -8.98 -42.84
By element:
Atomic # 1 Polarization: 12.47 SS G_CDS: -5.87 Total: 6.60 kcal
Atomic # 6 Polarization: 7.49 SS G_CDS: -0.52 Total: 6.97 kcal
Atomic # 7 Polarization: -55.82 SS G_CDS: -0.33 Total: -56.15 kcal
Atomic # 8 Polarization: -22.48 SS G_CDS: -0.39 Total: -22.86 kcal
Atomic # 14 Polarization: 22.75 SS G_CDS: -5.03 Total: 17.71 kcal
Atomic # 16 Polarization: 1.72 SS G_CDS: -2.46 Total: -0.75 kcal
Total LS contribution 5.63 Total: 5.63 kcal
Total: -33.87 -8.98 -42.84 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001098459692.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 46.101 kcal
(2) G-P(sol) polarization free energy of solvation -33.865 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.236 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.977 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.843 kcal
(6) G-S(sol) free energy of system = (1) + (5) 3.258 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.87 seconds