Wall clock time and date at job start Tue Mar 31 2020 23:09:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.50704 * 109.47056 * 2 1
4 4 N 1.30940 * 122.90311 * 269.95994 * 3 2 1
5 5 C 1.29431 * 117.36370 * 180.02562 * 4 3 2
6 6 S 1.70949 * 110.38800 * 359.72545 * 5 4 3
7 7 C 1.35662 * 122.90336 * 90.00521 * 3 2 1
8 8 C 1.46677 * 126.13054 * 359.95690 * 7 3 2
9 9 O 1.21683 * 120.00246 * 0.02562 * 8 7 3
10 10 N 1.34785 * 120.00086 * 180.02562 * 8 7 3
11 11 C 1.46498 * 120.00193 * 179.97438 * 10 8 7
12 12 C 1.52997 * 109.46943 * 180.02562 * 11 10 8
13 13 C 1.53001 * 109.55473 * 304.87446 * 12 11 10
14 14 C 1.53290 * 109.50941 * 184.74671 * 12 11 10
15 15 N 1.47170 * 108.41499 * 187.79524 * 14 12 11
16 16 C 1.36935 * 120.99701 * 230.54825 * 15 14 12
17 17 H 1.07992 * 120.00220 * 153.32579 * 16 15 14
18 18 C 1.38816 * 119.99598 * 333.33422 * 16 15 14
19 19 N 1.31616 * 120.00208 * 343.52376 * 18 16 15
20 20 Si 1.86797 * 119.99898 * 163.52863 * 18 16 15
21 21 H 1.48504 * 109.47120 * 89.99889 * 20 18 16
22 22 H 1.48504 * 109.47291 * 209.99333 * 20 18 16
23 23 H 1.48497 * 109.47353 * 329.99349 * 20 18 16
24 24 C 1.47156 * 118.02451 * 50.46879 * 15 14 12
25 25 C 1.53294 * 108.41770 * 309.53478 * 24 15 14
26 26 O 1.42961 * 109.22381 * 52.27835 * 25 24 15
27 27 H 1.09004 * 109.46963 * 300.00296 * 1 2 3
28 28 H 1.08998 * 109.47355 * 59.99913 * 1 2 3
29 29 H 1.08993 * 109.47347 * 179.97438 * 1 2 3
30 30 H 1.08998 * 109.47121 * 240.00401 * 2 1 3
31 31 H 1.08998 * 109.47355 * 120.00087 * 2 1 3
32 32 H 1.08002 * 124.80457 * 179.97438 * 5 4 3
33 33 H 0.96997 * 119.99320 * 0.02562 * 10 8 7
34 34 H 1.09003 * 109.46963 * 60.00123 * 11 10 8
35 35 H 1.08999 * 109.47164 * 300.00130 * 11 10 8
36 36 H 1.09004 * 109.46863 * 180.13027 * 13 12 11
37 37 H 1.08999 * 109.47377 * 300.12547 * 13 12 11
38 38 H 1.08996 * 109.46812 * 60.13062 * 13 12 11
39 39 H 1.09000 * 109.68636 * 307.49976 * 14 12 11
40 40 H 1.09007 * 109.68606 * 68.05506 * 14 12 11
41 41 H 0.96998 * 120.00577 * 180.02562 * 19 18 16
42 42 H 1.08996 * 109.68193 * 189.78958 * 24 15 14
43 43 H 1.09002 * 109.67597 * 69.27168 * 24 15 14
44 44 H 1.08994 * 109.51442 * 172.20976 * 25 24 15
45 45 H 1.09006 * 109.50925 * 292.30722 * 25 24 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0323 1.4209 0.0000
4 7 2.2701 2.0912 -1.0994
5 6 2.6999 3.3057 -0.9744
6 16 2.8382 3.7215 0.6780
7 6 2.2781 2.1156 1.1390
8 6 2.1024 1.6211 2.5087
9 8 1.7015 0.4882 2.6998
10 7 2.3850 2.4215 3.5556
11 6 2.2091 1.9277 4.9236
12 6 2.5965 3.0259 5.9159
13 6 4.0202 3.5029 5.6217
14 6 2.5265 2.4734 7.3441
15 7 2.7180 3.5893 8.2842
16 6 3.6364 3.5087 9.2968
17 1 4.0817 4.4084 9.6948
18 6 3.9951 2.2704 9.8114
19 7 3.2436 1.2162 9.5738
20 14 5.5441 2.1001 10.8414
21 1 5.2141 2.3218 12.2722
22 1 6.1061 0.7364 10.6687
23 1 6.5437 3.1066 10.4022
24 6 1.8945 4.7953 8.1029
25 6 1.9952 5.2347 6.6377
26 8 1.6896 4.1239 5.7911
27 1 -0.3633 0.5139 0.8900
28 1 -0.3634 0.5138 -0.8899
29 1 -0.3633 -1.0276 -0.0005
30 1 1.8933 -0.5138 -0.8900
31 1 1.8934 -0.5138 0.8899
32 1 2.9340 3.9645 -1.7976
33 1 2.7042 3.3246 3.4032
34 1 2.8443 1.0558 5.0797
35 1 1.1665 1.6500 5.0784
36 1 4.2956 4.2836 6.3308
37 1 4.7111 2.6653 5.7171
38 1 4.0680 3.8998 4.6077
39 1 1.5522 2.0149 7.5131
40 1 3.3120 1.7317 7.4898
41 1 3.4940 0.3510 9.9338
42 1 2.2613 5.5912 8.7509
43 1 0.8564 4.5711 8.3483
44 1 1.2866 6.0413 6.4500
45 1 3.0070 5.5834 6.4309
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001107985980.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 23:09:17
Heat of formation + Delta-G solvation = -31.383432 kcal
Electronic energy + Delta-G solvation = -27938.105581 eV
Core-core repulsion = 24082.587778 eV
Total energy + Delta-G solvation = -3855.517802 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 0.74 seconds
Orbital eigenvalues (eV)
-41.58035 -40.84051 -39.86368 -36.59635 -36.01086 -34.42629 -33.38443 -33.19058
-30.97579 -29.58177 -28.16589 -27.68556 -26.55184 -24.99318 -24.24125 -23.30677
-22.36707 -20.82028 -20.12810 -19.37661 -18.92685 -18.00743 -17.45217 -17.06251
-16.81385 -16.42530 -16.16018 -15.92003 -15.61427 -15.43033 -15.37051 -15.16951
-15.04342 -14.74699 -14.57504 -14.39438 -13.96696 -13.47874 -13.39809 -13.19385
-12.94998 -12.93832 -12.77842 -12.55122 -12.42497 -12.31372 -12.16938 -11.96599
-11.89799 -11.84324 -11.23562 -11.11425 -10.81090 -10.71426 -10.66203 -10.50106
-10.21767 -9.87390 -8.70940 -7.89374 -5.36294 -0.79528 0.17519 0.55447
1.38009 1.46115 1.48364 1.57254 1.95261 2.04985 2.48484 2.77124
3.15033 3.25621 3.48794 3.67165 3.88832 3.97721 4.00925 4.07916
4.10213 4.37974 4.41545 4.44323 4.46038 4.54192 4.57515 4.61982
4.70742 4.76760 4.93850 4.95194 5.01078 5.04155 5.10584 5.19067
5.21013 5.22517 5.34354 5.36618 5.53443 5.62174 6.29445 6.31061
6.36327 6.57076 7.00708 7.07554 7.76572 8.30752 9.16411
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.018143 B = 0.002861 C = 0.002721
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1542.930878 B = 9782.999833 C =10289.479050
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.129 4.129
2 C -0.063 4.063
3 C 0.143 3.857
4 N -0.499 5.499
5 C 0.050 3.950
6 S 0.211 5.789
7 C -0.325 4.325
8 C 0.591 3.409
9 O -0.555 6.555
10 N -0.703 5.703
11 C 0.150 3.850
12 C 0.092 3.908
13 C -0.154 4.154
14 C 0.169 3.831
15 N -0.607 5.607
16 C -0.259 4.259
17 H 0.074 0.926
18 C -0.049 4.049
19 N -0.935 5.935
20 Si 0.965 3.035
21 H -0.287 1.287
22 H -0.295 1.295
23 H -0.266 1.266
24 C 0.102 3.898
25 C 0.052 3.948
26 O -0.387 6.387
27 H 0.037 0.963
28 H 0.059 0.941
29 H 0.075 0.925
30 H 0.089 0.911
31 H 0.086 0.914
32 H 0.249 0.751
33 H 0.408 0.592
34 H 0.078 0.922
35 H 0.061 0.939
36 H 0.064 0.936
37 H 0.057 0.943
38 H 0.074 0.926
39 H -0.006 1.006
40 H 0.068 0.932
41 H 0.250 0.750
42 H 0.072 0.928
43 H 0.012 0.988
44 H 0.118 0.882
45 H 0.062 0.938
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.159 8.171 -21.787 23.269
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.187 4.187
2 C -0.103 4.103
3 C 0.004 3.996
4 N -0.213 5.213
5 C -0.244 4.244
6 S 0.467 5.533
7 C -0.449 4.449
8 C 0.377 3.623
9 O -0.435 6.435
10 N -0.355 5.355
11 C 0.026 3.974
12 C 0.051 3.949
13 C -0.212 4.212
14 C 0.042 3.958
15 N -0.331 5.331
16 C -0.389 4.389
17 H 0.091 0.909
18 C -0.244 4.244
19 N -0.581 5.581
20 Si 0.794 3.206
21 H -0.214 1.214
22 H -0.221 1.221
23 H -0.191 1.191
24 C -0.023 4.023
25 C -0.025 4.025
26 O -0.306 6.306
27 H 0.056 0.944
28 H 0.078 0.922
29 H 0.094 0.906
30 H 0.108 0.892
31 H 0.105 0.895
32 H 0.265 0.735
33 H 0.246 0.754
34 H 0.096 0.904
35 H 0.080 0.920
36 H 0.083 0.917
37 H 0.076 0.924
38 H 0.092 0.908
39 H 0.012 0.988
40 H 0.086 0.914
41 H 0.059 0.941
42 H 0.091 0.909
43 H 0.030 0.970
44 H 0.136 0.864
45 H 0.080 0.920
Dipole moment (debyes) X Y Z Total
from point charges 0.023 8.027 -21.697 23.134
hybrid contribution 0.496 -0.996 1.286 1.701
sum 0.519 7.031 -20.411 21.594
Atomic orbital electron populations
1.21534 0.93377 1.02780 1.01050 1.20408 0.97169 0.88597 1.04095
1.20850 0.94845 0.98507 0.85381 1.66178 1.16843 1.07487 1.30748
1.29519 0.98017 0.95354 1.01526 1.83819 1.57608 1.08790 1.03063
1.25386 1.20165 1.01460 0.97906 1.16978 0.77222 0.84811 0.83259
1.90777 1.47603 1.19602 1.85563 1.45737 1.67364 1.17208 1.05157
1.21104 1.01613 0.95447 0.79250 1.22205 0.90249 0.87248 0.95164
1.22121 0.95005 1.02363 1.01671 1.21034 0.98367 0.90462 0.85897
1.44246 1.42923 1.14497 1.31450 1.19485 1.14981 0.92928 1.11511
0.90876 1.25788 1.01721 0.96625 1.00296 1.70170 1.38271 1.00093
1.49601 0.85309 0.80068 0.76818 0.78454 1.21389 1.22127 1.19093
1.21815 0.93641 0.90085 0.96798 1.23125 1.01851 0.88260 0.89303
1.87836 1.53005 1.26473 1.63310 0.94359 0.92219 0.90639 0.89232
0.89549 0.73504 0.75447 0.90402 0.92017 0.91690 0.92374 0.90760
0.98828 0.91400 0.94063 0.90928 0.97008 0.86426 0.91994
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.86 9.89 71.98 0.71 -2.15 16
2 C -0.06 -1.50 5.75 29.85 0.17 -1.33 16
3 C 0.14 3.44 6.04 42.10 0.25 3.70 16
4 N -0.50 -10.18 10.50 -190.40 -2.00 -12.17 16
5 C 0.05 0.65 12.22 130.60 1.60 2.25 16
6 S 0.21 3.14 22.35 -56.49 -1.26 1.88 16
7 C -0.33 -7.90 6.48 23.88 0.15 -7.74 16
8 C 0.59 17.78 7.78 86.45 0.67 18.45 16
9 O -0.55 -20.05 14.27 -4.30 -0.06 -20.11 16
10 N -0.70 -20.01 5.19 -467.09 -2.42 -22.43 16
11 C 0.15 5.15 4.85 86.38 0.42 5.57 16
12 C 0.09 3.34 0.78 -10.70 -0.01 3.34 16
13 C -0.15 -4.89 7.86 71.98 0.57 -4.33 16
14 C 0.17 8.00 4.11 86.35 0.35 8.35 16
15 N -0.61 -29.31 2.57 -697.49 -1.79 -31.10 16
16 C -0.26 -13.62 9.65 84.03 0.81 -12.81 16
17 H 0.07 3.69 7.88 -2.91 -0.02 3.67 16
18 C -0.05 -2.65 4.95 84.86 0.42 -2.23 16
19 N -0.94 -54.49 11.14 21.65 0.24 -54.25 16
20 Si 0.97 43.62 29.58 68.60 2.03 45.65 16
21 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16
22 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16
23 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16
24 C 0.10 4.02 6.73 86.35 0.58 4.60 16
25 C 0.05 1.61 6.60 72.08 0.48 2.08 16
26 O -0.39 -13.36 10.17 -148.98 -1.52 -14.87 16
27 H 0.04 0.99 8.14 -2.38 -0.02 0.97 16
28 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16
29 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16
30 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16
31 H 0.09 2.41 6.01 -2.39 -0.01 2.40 16
32 H 0.25 0.79 8.06 -2.91 -0.02 0.77 16
33 H 0.41 9.84 6.19 -92.71 -0.57 9.27 16
34 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16
35 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16
36 H 0.06 2.23 6.12 -2.39 -0.01 2.21 16
37 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16
38 H 0.07 1.84 6.59 -2.39 -0.02 1.82 16
39 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16
40 H 0.07 3.59 6.16 -2.38 -0.01 3.57 16
41 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16
42 H 0.07 2.66 7.96 -2.39 -0.02 2.64 16
43 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16
44 H 0.12 2.83 8.14 -2.39 -0.02 2.81 16
45 H 0.06 1.79 6.26 -2.38 -0.01 1.78 16
Total: -1.00 -69.29 371.74 0.84 -68.45
By element:
Atomic # 1 Polarization: 20.79 SS G_CDS: 0.44 Total: 21.23 kcal
Atomic # 6 Polarization: 10.56 SS G_CDS: 7.18 Total: 17.74 kcal
Atomic # 7 Polarization: -113.98 SS G_CDS: -5.97 Total: -119.95 kcal
Atomic # 8 Polarization: -33.41 SS G_CDS: -1.58 Total: -34.99 kcal
Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal
Atomic # 16 Polarization: 3.14 SS G_CDS: -1.26 Total: 1.88 kcal
Total: -69.29 0.84 -68.45 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001107985980.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 37.064 kcal
(2) G-P(sol) polarization free energy of solvation -69.289 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.225 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.841 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.447 kcal
(6) G-S(sol) free energy of system = (1) + (5) -31.383 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.74 seconds