Wall clock time and date at job start Tue Mar 31 2020 23:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50700 * 109.47022 * 2 1 4 4 N 1.29430 * 124.80495 * 90.02860 * 3 2 1 5 5 C 1.30948 * 117.36061 * 179.97438 * 4 3 2 6 6 C 1.35658 * 114.19106 * 359.97438 * 5 4 3 7 7 C 1.46688 * 126.12820 * 180.02562 * 6 5 4 8 8 O 1.21683 * 120.00349 * 359.97438 * 7 6 5 9 9 N 1.34780 * 119.99807 * 180.02562 * 7 6 5 10 10 C 1.46500 * 119.99469 * 179.97438 * 9 7 6 11 11 C 1.53004 * 109.46646 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.51482 * 60.00000 * 11 10 9 13 13 C 1.53301 * 109.51242 * 180.10003 * 11 10 9 14 14 N 1.47150 * 108.38651 * 172.22456 * 13 11 10 15 15 C 1.36936 * 120.98114 * 129.44331 * 14 13 11 16 16 H 1.07999 * 119.99992 * 206.24171 * 15 14 13 17 17 C 1.38807 * 119.99967 * 26.23959 * 15 14 13 18 18 N 1.31623 * 120.00219 * 16.91563 * 17 15 14 19 19 Si 1.86802 * 120.00069 * 196.91168 * 17 15 14 20 20 H 1.48501 * 109.46911 * 60.00135 * 19 17 15 21 21 H 1.48500 * 109.47377 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47057 * 300.00018 * 19 17 15 23 23 C 1.47155 * 118.03499 * 309.46602 * 14 13 11 24 24 C 1.53295 * 108.38212 * 50.53496 * 23 14 13 25 25 O 1.42952 * 109.26751 * 307.71992 * 24 23 14 26 26 S 1.70955 * 124.79966 * 269.71739 * 3 2 1 27 27 H 1.09003 * 109.46681 * 300.00489 * 1 2 3 28 28 H 1.08994 * 109.47048 * 59.99943 * 1 2 3 29 29 H 1.08997 * 109.47332 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47171 * 239.99859 * 2 1 3 31 31 H 1.09007 * 109.47050 * 119.99747 * 2 1 3 32 32 H 1.07993 * 122.90005 * 179.97438 * 5 4 3 33 33 H 0.96994 * 120.00026 * 359.97438 * 9 7 6 34 34 H 1.09003 * 109.47657 * 299.99279 * 10 9 7 35 35 H 1.09001 * 109.47498 * 59.99665 * 10 9 7 36 36 H 1.09003 * 109.47224 * 60.00145 * 12 11 10 37 37 H 1.09000 * 109.47319 * 179.97438 * 12 11 10 38 38 H 1.08996 * 109.47301 * 300.00239 * 12 11 10 39 39 H 1.08996 * 109.68138 * 291.95370 * 13 11 10 40 40 H 1.09007 * 109.67949 * 52.46279 * 13 11 10 41 41 H 0.96998 * 120.00366 * 180.02562 * 18 17 15 42 42 H 1.09004 * 109.67831 * 170.25649 * 23 14 13 43 43 H 1.08995 * 109.67962 * 290.80887 * 23 14 13 44 44 H 1.09001 * 109.51311 * 67.62319 * 24 23 14 45 45 H 1.09004 * 109.51011 * 187.71710 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2791 2.1172 1.0627 5 6 2.7123 3.3412 0.8931 6 6 2.8429 3.7096 -0.4060 7 6 3.3052 5.0139 -0.8927 8 8 3.6132 5.8847 -0.1006 9 7 3.3877 5.2481 -2.2175 10 6 3.8488 6.5509 -2.7036 11 6 3.8498 6.5530 -4.2336 12 6 2.4323 6.2906 -4.7460 13 6 4.3346 7.9151 -4.7434 14 7 4.5052 7.8306 -6.2025 15 6 3.9468 8.7654 -7.0329 16 1 3.7022 8.5050 -8.0520 17 6 3.6951 10.0477 -6.5646 18 7 4.2778 10.4724 -5.4634 19 14 2.5295 11.1706 -7.4972 20 1 1.1853 10.5429 -7.5643 21 1 2.4323 12.4758 -6.7957 22 1 3.0446 11.3859 -8.8732 23 6 5.2933 6.7116 -6.7431 24 6 4.7618 5.4082 -6.1358 25 8 4.7273 5.5309 -4.7120 26 16 2.3641 2.3384 -1.4038 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8901 32 1 2.9454 4.0003 1.7162 33 1 3.1418 4.5541 -2.8489 34 1 3.1812 7.3318 -2.3393 35 1 4.8591 6.7377 -2.3396 36 1 1.7642 7.0714 -4.3824 37 1 2.4337 6.2928 -5.8360 38 1 2.0889 5.3214 -4.3846 39 1 3.5966 8.6806 -4.5038 40 1 5.2871 8.1644 -4.2756 41 1 4.1017 11.3683 -5.1360 42 1 5.1901 6.6802 -7.8277 43 1 6.3426 6.8394 -6.4772 44 1 3.7556 5.2167 -6.5086 45 1 5.4167 4.5828 -6.4152 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108432492.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:29 Heat of formation + Delta-G solvation = -14.806520 kcal Electronic energy + Delta-G solvation = -27444.233030 eV Core-core repulsion = 23589.434057 eV Total energy + Delta-G solvation = -3854.798974 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.35447 -39.55291 -38.65078 -35.03453 -34.39884 -34.37530 -31.96088 -31.29721 -30.08261 -28.00032 -26.91490 -26.22463 -25.38796 -23.30486 -23.21507 -22.00138 -21.02783 -19.83968 -18.76459 -18.49554 -17.32538 -16.82127 -16.08174 -15.76102 -15.49885 -15.10962 -14.98002 -14.67060 -14.58895 -14.32994 -14.08716 -14.03801 -13.71003 -13.54906 -13.10651 -12.90989 -12.71397 -12.51368 -12.17573 -11.98233 -11.80935 -11.64413 -11.61911 -11.23675 -11.05368 -10.85017 -10.71874 -10.36185 -10.30908 -10.29104 -10.03221 -9.90259 -9.76442 -9.59070 -9.21802 -9.10792 -8.92540 -8.57034 -6.78209 -5.87931 -3.31475 0.00597 0.89086 1.31440 2.26217 3.11260 3.14422 3.32438 3.38953 3.39420 3.71460 4.18552 4.40504 4.47649 4.69446 4.73566 4.80643 5.04083 5.09865 5.18292 5.30188 5.35806 5.41307 5.46520 5.47639 5.62411 5.70858 5.85094 5.87429 5.89009 5.94842 6.02915 6.08764 6.24338 6.36837 6.48098 6.60294 6.70302 6.78033 7.02628 7.31083 7.41841 7.49114 7.67114 7.82277 8.13136 8.29438 9.07147 9.70232 10.27268 11.20131 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019832 B = 0.002580 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.548076 B =10849.608099 C =11157.179265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.051 4.051 3 C 0.057 3.943 4 N -0.478 5.478 5 C 0.116 3.884 6 C -0.285 4.285 7 C 0.591 3.409 8 O -0.528 6.528 9 N -0.709 5.709 10 C 0.139 3.861 11 C 0.077 3.923 12 C -0.163 4.163 13 C 0.160 3.840 14 N -0.590 5.590 15 C -0.256 4.256 16 H 0.068 0.932 17 C 0.004 3.996 18 N -0.901 5.901 19 Si 0.903 3.097 20 H -0.283 1.283 21 H -0.289 1.289 22 H -0.282 1.282 23 C 0.109 3.891 24 C 0.046 3.954 25 O -0.385 6.385 26 S 0.167 5.833 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.189 0.811 33 H 0.400 0.600 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.040 0.960 39 H 0.097 0.903 40 H 0.030 0.970 41 H 0.257 0.743 42 H 0.062 0.938 43 H 0.026 0.974 44 H 0.048 0.952 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.149 -20.671 7.534 22.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.091 4.091 3 C -0.218 4.218 4 N -0.192 5.192 5 C -0.041 4.041 6 C -0.409 4.409 7 C 0.375 3.625 8 O -0.407 6.407 9 N -0.360 5.360 10 C 0.016 3.984 11 C 0.036 3.964 12 C -0.220 4.220 13 C 0.033 3.967 14 N -0.314 5.314 15 C -0.385 4.385 16 H 0.086 0.914 17 C -0.195 4.195 18 N -0.545 5.545 19 Si 0.733 3.267 20 H -0.210 1.210 21 H -0.215 1.215 22 H -0.208 1.208 23 C -0.017 4.017 24 C -0.032 4.032 25 O -0.304 6.304 26 S 0.424 5.576 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.107 0.893 31 H 0.116 0.884 32 H 0.206 0.794 33 H 0.235 0.765 34 H 0.104 0.896 35 H 0.096 0.904 36 H 0.082 0.918 37 H 0.094 0.906 38 H 0.059 0.941 39 H 0.115 0.885 40 H 0.048 0.952 41 H 0.067 0.933 42 H 0.080 0.920 43 H 0.044 0.956 44 H 0.066 0.934 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.967 -20.410 7.657 22.601 hybrid contribution -0.519 1.131 -0.265 1.272 sum -6.486 -19.278 7.392 21.642 Atomic orbital electron populations 1.21789 0.93125 1.02835 1.02927 1.20312 0.96998 0.87169 1.04665 1.27530 1.01105 1.02008 0.91179 1.66218 1.15586 1.06149 1.31198 1.22186 0.95136 0.91213 0.95569 1.25857 1.16819 1.00438 0.97813 1.16718 0.78122 0.84880 0.82811 1.90850 1.49751 1.44828 1.55228 1.45896 1.66976 1.17326 1.05810 1.21461 1.00966 0.83699 0.92265 1.22569 0.89957 0.92618 0.91230 1.22217 0.96305 1.00146 1.03344 1.21290 1.00253 0.91138 0.83985 1.43981 1.58494 1.27137 1.01755 1.19108 1.34298 0.89734 0.95356 0.91440 1.25040 0.99900 0.96374 0.98158 1.70000 1.42697 1.17872 1.23962 0.86357 0.81180 0.79911 0.79256 1.20965 1.21522 1.20839 1.21598 0.94492 0.88248 0.97393 1.23045 1.00208 0.98539 0.81419 1.87809 1.65460 1.55705 1.21449 1.83986 1.57894 1.04335 1.11388 0.91795 0.92184 0.91119 0.89284 0.88415 0.79435 0.76469 0.89617 0.90388 0.91756 0.90636 0.94110 0.88467 0.95153 0.93321 0.91998 0.95608 0.93365 0.90120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.89 37.16 0.37 -0.41 16 2 C -0.05 -0.30 6.51 -27.88 -0.18 -0.48 16 3 C 0.06 0.53 6.64 -13.29 -0.09 0.44 16 4 N -0.48 -5.51 10.51 -11.50 -0.12 -5.63 16 5 C 0.12 1.42 11.09 -18.85 -0.21 1.21 16 6 C -0.29 -3.63 6.48 -37.09 -0.24 -3.87 16 7 C 0.59 9.12 7.79 -12.85 -0.10 9.02 16 8 O -0.53 -9.80 16.87 5.20 0.09 -9.71 16 9 N -0.71 -10.52 5.15 -61.61 -0.32 -10.84 16 10 C 0.14 2.37 4.82 -4.04 -0.02 2.35 16 11 C 0.08 1.41 0.76 -90.46 -0.07 1.34 16 12 C -0.16 -2.73 7.92 37.16 0.29 -2.43 16 13 C 0.16 3.66 4.11 -3.53 -0.01 3.64 16 14 N -0.59 -14.10 2.57 -171.83 -0.44 -14.54 16 15 C -0.26 -6.69 9.65 -15.06 -0.15 -6.84 16 16 H 0.07 1.73 7.88 -52.49 -0.41 1.31 16 17 C 0.00 0.12 4.95 -17.43 -0.09 0.03 16 18 N -0.90 -25.37 11.14 55.49 0.62 -24.75 16 19 Si 0.90 21.02 29.59 -169.99 -5.03 16.00 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 C 0.11 2.19 6.74 -3.53 -0.02 2.17 16 24 C 0.05 0.77 6.60 37.31 0.25 1.01 16 25 O -0.38 -6.93 9.98 -35.23 -0.35 -7.28 16 26 S 0.17 1.60 22.31 -107.50 -2.40 -0.80 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.10 0.54 8.14 -51.92 -0.42 0.12 16 32 H 0.19 2.14 8.06 -52.49 -0.42 1.71 16 33 H 0.40 5.33 6.38 -40.82 -0.26 5.07 16 34 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 35 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.07 1.38 6.12 -51.93 -0.32 1.06 16 38 H 0.04 0.57 6.86 -51.93 -0.36 0.22 16 39 H 0.10 2.45 6.13 -51.93 -0.32 2.13 16 40 H 0.03 0.76 8.14 -51.92 -0.42 0.34 16 41 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 42 H 0.06 1.18 7.96 -51.93 -0.41 0.76 16 43 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.05 0.78 6.26 -51.93 -0.32 0.46 16 45 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 LS Contribution 376.89 15.07 5.68 5.68 Total: -1.00 -31.11 376.89 -9.16 -40.26 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -6.61 Total: 4.43 kcal Atomic # 6 Polarization: 7.45 SS G_CDS: -0.27 Total: 7.18 kcal Atomic # 7 Polarization: -55.49 SS G_CDS: -0.26 Total: -55.76 kcal Atomic # 8 Polarization: -16.73 SS G_CDS: -0.26 Total: -16.99 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.03 Total: 16.00 kcal Atomic # 16 Polarization: 1.60 SS G_CDS: -2.40 Total: -0.80 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.11 -9.16 -40.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108432492.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.456 kcal (2) G-P(sol) polarization free energy of solvation -31.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds