Wall clock time and date at job start Tue Mar 31 2020 23:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50700 * 109.47022 * 2 1 4 4 N 1.29430 * 124.80495 * 90.02860 * 3 2 1 5 5 C 1.30948 * 117.36061 * 179.97438 * 4 3 2 6 6 C 1.35658 * 114.19106 * 359.97438 * 5 4 3 7 7 C 1.46688 * 126.12820 * 180.02562 * 6 5 4 8 8 O 1.21683 * 120.00349 * 359.97438 * 7 6 5 9 9 N 1.34780 * 119.99807 * 180.02562 * 7 6 5 10 10 C 1.46500 * 119.99469 * 179.97438 * 9 7 6 11 11 C 1.53004 * 109.46646 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.51482 * 60.00000 * 11 10 9 13 13 C 1.53301 * 109.51242 * 180.10003 * 11 10 9 14 14 N 1.47150 * 108.38651 * 172.22456 * 13 11 10 15 15 C 1.36936 * 120.98114 * 129.44331 * 14 13 11 16 16 H 1.07999 * 119.99992 * 206.24171 * 15 14 13 17 17 C 1.38807 * 119.99967 * 26.23959 * 15 14 13 18 18 N 1.31623 * 120.00219 * 16.91563 * 17 15 14 19 19 Si 1.86802 * 120.00069 * 196.91168 * 17 15 14 20 20 H 1.48501 * 109.46911 * 60.00135 * 19 17 15 21 21 H 1.48500 * 109.47377 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47057 * 300.00018 * 19 17 15 23 23 C 1.47155 * 118.03499 * 309.46602 * 14 13 11 24 24 C 1.53295 * 108.38212 * 50.53496 * 23 14 13 25 25 O 1.42952 * 109.26751 * 307.71992 * 24 23 14 26 26 S 1.70955 * 124.79966 * 269.71739 * 3 2 1 27 27 H 1.09003 * 109.46681 * 300.00489 * 1 2 3 28 28 H 1.08994 * 109.47048 * 59.99943 * 1 2 3 29 29 H 1.08997 * 109.47332 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47171 * 239.99859 * 2 1 3 31 31 H 1.09007 * 109.47050 * 119.99747 * 2 1 3 32 32 H 1.07993 * 122.90005 * 179.97438 * 5 4 3 33 33 H 0.96994 * 120.00026 * 359.97438 * 9 7 6 34 34 H 1.09003 * 109.47657 * 299.99279 * 10 9 7 35 35 H 1.09001 * 109.47498 * 59.99665 * 10 9 7 36 36 H 1.09003 * 109.47224 * 60.00145 * 12 11 10 37 37 H 1.09000 * 109.47319 * 179.97438 * 12 11 10 38 38 H 1.08996 * 109.47301 * 300.00239 * 12 11 10 39 39 H 1.08996 * 109.68138 * 291.95370 * 13 11 10 40 40 H 1.09007 * 109.67949 * 52.46279 * 13 11 10 41 41 H 0.96998 * 120.00366 * 180.02562 * 18 17 15 42 42 H 1.09004 * 109.67831 * 170.25649 * 23 14 13 43 43 H 1.08995 * 109.67962 * 290.80887 * 23 14 13 44 44 H 1.09001 * 109.51311 * 67.62319 * 24 23 14 45 45 H 1.09004 * 109.51011 * 187.71710 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2791 2.1172 1.0627 5 6 2.7123 3.3412 0.8931 6 6 2.8429 3.7096 -0.4060 7 6 3.3052 5.0139 -0.8927 8 8 3.6132 5.8847 -0.1006 9 7 3.3877 5.2481 -2.2175 10 6 3.8488 6.5509 -2.7036 11 6 3.8498 6.5530 -4.2336 12 6 2.4323 6.2906 -4.7460 13 6 4.3346 7.9151 -4.7434 14 7 4.5052 7.8306 -6.2025 15 6 3.9468 8.7654 -7.0329 16 1 3.7022 8.5050 -8.0520 17 6 3.6951 10.0477 -6.5646 18 7 4.2778 10.4724 -5.4634 19 14 2.5295 11.1706 -7.4972 20 1 1.1853 10.5429 -7.5643 21 1 2.4323 12.4758 -6.7957 22 1 3.0446 11.3859 -8.8732 23 6 5.2933 6.7116 -6.7431 24 6 4.7618 5.4082 -6.1358 25 8 4.7273 5.5309 -4.7120 26 16 2.3641 2.3384 -1.4038 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8901 32 1 2.9454 4.0003 1.7162 33 1 3.1418 4.5541 -2.8489 34 1 3.1812 7.3318 -2.3393 35 1 4.8591 6.7377 -2.3396 36 1 1.7642 7.0714 -4.3824 37 1 2.4337 6.2928 -5.8360 38 1 2.0889 5.3214 -4.3846 39 1 3.5966 8.6806 -4.5038 40 1 5.2871 8.1644 -4.2756 41 1 4.1017 11.3683 -5.1360 42 1 5.1901 6.6802 -7.8277 43 1 6.3426 6.8394 -6.4772 44 1 3.7556 5.2167 -6.5086 45 1 5.4167 4.5828 -6.4152 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108432492.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:29 Heat of formation + Delta-G solvation = -35.765904 kcal Electronic energy + Delta-G solvation = -27445.141897 eV Core-core repulsion = 23589.434057 eV Total energy + Delta-G solvation = -3855.707841 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.43443 -40.80223 -39.96789 -36.59665 -35.99463 -34.97101 -33.37679 -33.19495 -31.01128 -29.58680 -28.15889 -27.68498 -26.58954 -24.99817 -23.96638 -23.22714 -22.45059 -20.95541 -20.18896 -19.43435 -18.95019 -18.09343 -17.48541 -17.02255 -16.87468 -16.47947 -16.16940 -15.85788 -15.68702 -15.55175 -15.45395 -15.25095 -14.94173 -14.72693 -14.58709 -14.42862 -14.02984 -13.50710 -13.23214 -13.18962 -12.93737 -12.76432 -12.72239 -12.57449 -12.53486 -12.44618 -12.18651 -12.05758 -11.97877 -11.85902 -11.46406 -11.12400 -10.82187 -10.74716 -10.66006 -10.50015 -10.27173 -9.96763 -8.71943 -7.89517 -5.36168 -0.86552 0.07862 0.48130 1.31764 1.46789 1.48708 1.55569 1.89920 2.03370 2.48413 2.75993 3.01143 3.24977 3.48253 3.66153 3.85197 3.90659 3.98678 4.08020 4.16540 4.27776 4.30570 4.41094 4.46083 4.53558 4.60472 4.68553 4.70598 4.76223 4.93828 4.96825 5.01288 5.02966 5.09034 5.09960 5.17956 5.21126 5.34318 5.35137 5.53066 5.61808 6.26307 6.29007 6.35455 6.52331 6.94032 7.07136 7.76467 8.30375 9.16123 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019832 B = 0.002580 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.548076 B =10849.608099 C =11157.179265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.053 4.053 3 C 0.066 3.934 4 N -0.501 5.501 5 C 0.120 3.880 6 C -0.320 4.320 7 C 0.593 3.407 8 O -0.569 6.569 9 N -0.699 5.699 10 C 0.148 3.852 11 C 0.093 3.907 12 C -0.154 4.154 13 C 0.168 3.832 14 N -0.606 5.606 15 C -0.259 4.259 16 H 0.074 0.926 17 C -0.049 4.049 18 N -0.936 5.936 19 Si 0.966 3.034 20 H -0.275 1.275 21 H -0.298 1.298 22 H -0.276 1.276 23 C 0.101 3.899 24 C 0.052 3.948 25 O -0.386 6.386 26 S 0.218 5.782 27 H 0.049 0.951 28 H 0.060 0.940 29 H 0.091 0.909 30 H 0.115 0.885 31 H 0.105 0.895 32 H 0.186 0.814 33 H 0.410 0.590 34 H 0.079 0.921 35 H 0.061 0.939 36 H 0.057 0.943 37 H 0.065 0.935 38 H 0.074 0.926 39 H 0.068 0.932 40 H -0.006 1.006 41 H 0.250 0.750 42 H 0.073 0.927 43 H 0.012 0.988 44 H 0.062 0.938 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.623 -24.115 6.369 26.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.094 4.094 3 C -0.208 4.208 4 N -0.215 5.215 5 C -0.038 4.038 6 C -0.444 4.444 7 C 0.379 3.621 8 O -0.450 6.450 9 N -0.351 5.351 10 C 0.024 3.976 11 C 0.052 3.948 12 C -0.212 4.212 13 C 0.041 3.959 14 N -0.330 5.330 15 C -0.389 4.389 16 H 0.092 0.908 17 C -0.245 4.245 18 N -0.582 5.582 19 Si 0.794 3.206 20 H -0.200 1.200 21 H -0.225 1.225 22 H -0.201 1.201 23 C -0.024 4.024 24 C -0.025 4.025 25 O -0.305 6.305 26 S 0.476 5.524 27 H 0.068 0.932 28 H 0.079 0.921 29 H 0.110 0.890 30 H 0.133 0.867 31 H 0.123 0.877 32 H 0.203 0.797 33 H 0.247 0.753 34 H 0.097 0.903 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.012 0.988 41 H 0.059 0.941 42 H 0.091 0.909 43 H 0.030 0.970 44 H 0.080 0.920 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -7.448 -23.918 6.444 25.867 hybrid contribution -0.014 2.075 0.071 2.076 sum -7.462 -21.844 6.515 23.985 Atomic orbital electron populations 1.21798 0.92375 1.04078 1.02269 1.20584 0.97458 0.85042 1.06323 1.28268 0.98729 1.03042 0.90791 1.66303 1.17004 1.06002 1.32204 1.22272 0.94364 0.91631 0.95573 1.25569 1.19320 1.00626 0.98906 1.17020 0.77170 0.85525 0.82356 1.90822 1.51549 1.46539 1.56087 1.45683 1.66809 1.16564 1.06023 1.21164 1.00065 0.84857 0.91537 1.22196 0.90918 0.90014 0.91661 1.22127 0.94756 1.01762 1.02545 1.21048 0.97715 0.93302 0.83859 1.44235 1.59182 1.27756 1.01876 1.19466 1.33451 0.90158 0.95822 0.90810 1.25785 1.01583 0.97933 0.99191 1.70172 1.44438 1.17855 1.25758 0.85363 0.79536 0.77649 0.78050 1.20043 1.22452 1.20134 1.21824 0.93465 0.88745 0.98349 1.23129 1.01689 0.97466 0.80231 1.87821 1.65448 1.54827 1.22453 1.83713 1.56717 1.02000 1.10003 0.93224 0.92089 0.88982 0.86687 0.87695 0.79725 0.75279 0.90276 0.92080 0.92442 0.91645 0.90738 0.91335 0.98804 0.94057 0.90879 0.96979 0.91983 0.86321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.89 71.98 0.71 -0.38 16 2 C -0.05 -0.46 6.51 29.85 0.19 -0.26 16 3 C 0.07 1.07 6.64 88.46 0.59 1.65 16 4 N -0.50 -10.86 10.51 -190.30 -2.00 -12.86 16 5 C 0.12 2.90 11.09 84.23 0.93 3.83 16 6 C -0.32 -7.88 6.48 23.88 0.15 -7.73 16 7 C 0.59 18.33 7.79 86.45 0.67 19.00 16 8 O -0.57 -21.84 16.87 -4.29 -0.07 -21.91 16 9 N -0.70 -20.26 5.15 -467.06 -2.40 -22.66 16 10 C 0.15 5.14 4.82 86.38 0.42 5.56 16 11 C 0.09 3.38 0.76 -10.69 -0.01 3.38 16 12 C -0.15 -4.94 7.92 71.98 0.57 -4.37 16 13 C 0.17 7.95 4.11 86.36 0.36 8.30 16 14 N -0.61 -29.26 2.57 -697.53 -1.79 -31.05 16 15 C -0.26 -13.62 9.65 84.03 0.81 -12.81 16 16 H 0.07 3.72 7.88 -2.91 -0.02 3.69 16 17 C -0.05 -2.69 4.95 84.86 0.42 -2.27 16 18 N -0.94 -54.75 11.14 21.65 0.24 -54.51 16 19 Si 0.97 43.72 29.59 68.60 2.03 45.75 16 20 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 21 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 22 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 23 C 0.10 3.98 6.74 86.35 0.58 4.56 16 24 C 0.05 1.60 6.60 72.08 0.48 2.07 16 25 O -0.39 -13.23 9.98 -148.98 -1.49 -14.72 16 26 S 0.22 3.57 22.31 -56.49 -1.26 2.31 16 27 H 0.05 0.52 8.14 -2.39 -0.02 0.51 16 28 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.10 0.83 8.14 -2.38 -0.02 0.81 16 32 H 0.19 4.34 8.06 -2.91 -0.02 4.32 16 33 H 0.41 10.01 6.38 -92.71 -0.59 9.42 16 34 H 0.08 2.85 8.14 -2.39 -0.02 2.83 16 35 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 36 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.06 2.25 6.12 -2.39 -0.01 2.23 16 38 H 0.07 1.86 6.86 -2.39 -0.02 1.85 16 39 H 0.07 3.64 6.13 -2.39 -0.01 3.62 16 40 H -0.01 -0.33 8.14 -2.38 -0.02 -0.34 16 41 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 42 H 0.07 2.66 7.96 -2.39 -0.02 2.65 16 43 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 44 H 0.06 1.78 6.26 -2.39 -0.01 1.77 16 45 H 0.12 2.81 8.14 -2.38 -0.02 2.79 16 Total: -1.00 -69.80 376.89 0.55 -69.25 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: 0.42 Total: 19.86 kcal Atomic # 6 Polarization: 13.67 SS G_CDS: 6.88 Total: 20.55 kcal Atomic # 7 Polarization: -115.13 SS G_CDS: -5.96 Total: -121.09 kcal Atomic # 8 Polarization: -35.07 SS G_CDS: -1.56 Total: -36.63 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Atomic # 16 Polarization: 3.57 SS G_CDS: -1.26 Total: 2.31 kcal Total: -69.80 0.55 -69.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108432492.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.487 kcal (2) G-P(sol) polarization free energy of solvation -69.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds