Wall clock time and date at job start Tue Mar 31 2020 23:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50697 * 109.47239 * 2 1 4 4 C 1.33818 * 124.52635 * 89.99815 * 3 2 1 5 5 C 1.37468 * 115.10153 * 179.97438 * 4 3 2 6 6 C 1.36648 * 113.29981 * 0.02562 * 5 4 3 7 7 C 1.46588 * 125.46001 * 180.02562 * 6 5 4 8 8 O 1.21700 * 119.99670 * 359.97438 * 7 6 5 9 9 N 1.34775 * 119.99843 * 179.97438 * 7 6 5 10 10 C 1.46497 * 119.99803 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.47028 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47247 * 179.97438 * 11 10 9 13 13 N 1.46895 * 109.47537 * 180.02562 * 12 11 10 14 14 C 1.46897 * 111.00443 * 180.02562 * 13 12 11 15 15 C 1.50702 * 109.47312 * 180.02562 * 14 13 12 16 16 O 1.21286 * 119.99914 * 359.97438 * 15 14 13 17 17 N 1.34773 * 119.99728 * 179.97438 * 15 14 13 18 18 C 1.37099 * 120.00076 * 179.97438 * 17 15 14 19 19 H 1.08001 * 119.99686 * 0.02562 * 18 17 15 20 20 C 1.38940 * 120.00477 * 179.97438 * 18 17 15 21 21 N 1.31422 * 119.99757 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00432 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.46762 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47165 * 120.00057 * 22 20 18 25 25 H 1.48491 * 109.47417 * 240.00436 * 22 20 18 26 26 S 1.70616 * 124.52099 * 269.69826 * 3 2 1 27 27 H 1.09001 * 109.47002 * 60.00070 * 1 2 3 28 28 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47050 * 300.00336 * 1 2 3 30 30 H 1.09001 * 109.46998 * 119.99373 * 2 1 3 31 31 H 1.09000 * 109.47050 * 239.99664 * 2 1 3 32 32 H 1.08001 * 122.44644 * 359.97438 * 4 3 2 33 33 H 1.07994 * 123.35265 * 179.97438 * 5 4 3 34 34 H 0.97004 * 119.99845 * 0.02562 * 9 7 6 35 35 H 1.08997 * 109.47176 * 300.00331 * 10 9 7 36 36 H 1.08998 * 109.46984 * 60.00492 * 10 9 7 37 37 H 1.08997 * 109.47421 * 300.00192 * 11 10 9 38 38 H 1.09007 * 109.46669 * 60.00510 * 11 10 9 39 39 H 1.09005 * 109.47282 * 300.00728 * 12 11 10 40 40 H 1.09001 * 109.47085 * 60.00010 * 12 11 10 41 41 H 1.00905 * 111.00090 * 56.04410 * 13 12 11 42 42 H 1.09004 * 109.46779 * 299.99652 * 14 13 12 43 43 H 1.09004 * 109.47141 * 59.99345 * 14 13 12 44 44 H 0.96997 * 120.00290 * 359.97438 * 17 15 14 45 45 H 0.97002 * 119.99488 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2852 2.1359 1.1025 5 6 2.7378 3.4142 0.8774 6 6 2.8470 3.7232 -0.4492 7 6 3.3024 5.0080 -0.9885 8 8 3.6208 5.9068 -0.2323 9 7 3.3684 5.1938 -2.3217 10 6 3.8230 6.4779 -2.8607 11 6 3.8051 6.4244 -4.3896 12 6 4.2792 7.7658 -4.9525 13 7 4.2615 7.7146 -6.4205 14 6 4.7123 8.9882 -6.9972 15 6 4.6801 8.8981 -8.5012 16 8 4.3177 7.8735 -9.0396 17 7 5.0539 9.9560 -9.2478 18 6 5.0252 9.8739 -10.6160 19 1 4.7025 8.9615 -11.0955 20 6 5.4101 10.9646 -11.3858 21 7 5.8022 12.0750 -10.8023 22 14 5.3701 10.8529 -13.2500 23 1 4.8938 9.5060 -13.6551 24 1 4.4488 11.8858 -13.7882 25 1 6.7354 11.0783 -13.7888 26 16 2.3617 2.3299 -1.4057 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5137 0.8901 31 1 1.8934 -0.5139 -0.8900 32 1 2.1440 1.7377 2.0964 33 1 2.9820 4.1058 1.6700 34 1 3.1143 4.4774 -2.9244 35 1 3.1598 7.2716 -2.5167 36 1 4.8377 6.6777 -2.5164 37 1 4.4686 5.6308 -4.7332 38 1 2.7904 6.2244 -4.7343 39 1 3.6154 8.5591 -4.6089 40 1 5.2937 7.9663 -4.6079 41 1 3.3452 7.4666 -6.7627 42 1 4.0519 9.7903 -6.6675 43 1 5.7300 9.1966 -6.6670 44 1 5.3434 10.7755 -8.8172 45 1 6.0713 12.8363 -11.3398 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161994769.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:34 Heat of formation + Delta-G solvation = -57.587937 kcal Electronic energy + Delta-G solvation = -24644.132526 eV Core-core repulsion = 20787.478411 eV Total energy + Delta-G solvation = -3856.654115 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.06565 -38.42859 -38.27996 -36.55374 -34.90776 -34.26213 -33.84693 -31.65315 -31.15324 -29.30618 -27.22092 -25.79398 -24.66323 -23.30539 -22.81683 -21.77061 -21.58685 -19.65335 -19.18617 -18.28999 -17.86870 -16.73838 -16.41814 -16.15137 -15.87648 -15.46160 -15.35601 -14.75532 -14.68851 -14.53638 -14.36284 -14.17160 -13.80747 -13.50578 -13.49469 -13.27568 -12.93622 -12.80352 -12.39563 -12.08873 -12.06825 -11.85095 -11.82242 -11.68172 -11.47388 -11.43575 -11.29086 -11.10424 -10.96047 -10.38835 -10.34297 -10.22390 -9.52124 -9.48957 -9.08868 -9.03264 -8.47546 -8.07794 -7.95983 -6.41761 -3.82659 0.06298 0.98798 1.41182 1.95792 2.76621 2.88008 3.16444 3.27020 3.34272 3.90745 4.07805 4.10554 4.29384 4.41626 4.46818 4.68282 4.79532 4.81052 4.93674 4.95666 5.02961 5.12953 5.16990 5.25828 5.27453 5.34435 5.40925 5.47359 5.55574 5.61161 5.61562 5.72149 5.78865 5.91470 5.93417 5.97886 6.00669 6.10099 6.26758 7.08493 7.18632 7.55440 7.63845 7.81061 8.06533 8.61192 9.17912 9.54372 10.05645 10.76042 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.026914 B = 0.001370 C = 0.001311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.082902 B =20429.703505 C =21350.805129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.057 4.057 3 C -0.189 4.189 4 C -0.155 4.155 5 C -0.050 4.050 6 C -0.271 4.271 7 C 0.590 3.410 8 O -0.530 6.530 9 N -0.725 5.725 10 C 0.121 3.879 11 C -0.130 4.130 12 C 0.063 3.937 13 N -0.670 5.670 14 C 0.051 3.949 15 C 0.441 3.559 16 O -0.584 6.584 17 N -0.564 5.564 18 C -0.299 4.299 19 H 0.104 0.896 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.930 3.070 23 H -0.268 1.268 24 H -0.282 1.282 25 H -0.281 1.281 26 S 0.202 5.798 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.144 0.856 33 H 0.153 0.847 34 H 0.399 0.601 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.070 0.930 39 H 0.030 0.970 40 H 0.075 0.925 41 H 0.349 0.651 42 H 0.044 0.956 43 H 0.087 0.913 44 H 0.392 0.608 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.600 -20.414 25.050 33.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.096 4.096 3 C -0.308 4.308 4 C -0.186 4.186 5 C -0.083 4.083 6 C -0.391 4.391 7 C 0.376 3.624 8 O -0.408 6.408 9 N -0.376 5.376 10 C -0.002 4.002 11 C -0.169 4.169 12 C -0.067 4.067 13 N -0.302 5.302 14 C -0.082 4.082 15 C 0.226 3.774 16 O -0.468 6.468 17 N -0.200 5.200 18 C -0.429 4.429 19 H 0.121 0.879 20 C -0.179 4.179 21 N -0.543 5.543 22 Si 0.757 3.243 23 H -0.192 1.192 24 H -0.208 1.208 25 H -0.207 1.207 26 S 0.470 5.530 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.103 0.897 31 H 0.095 0.905 32 H 0.162 0.838 33 H 0.171 0.829 34 H 0.233 0.767 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.100 0.900 38 H 0.088 0.912 39 H 0.048 0.952 40 H 0.093 0.907 41 H 0.168 0.832 42 H 0.062 0.938 43 H 0.105 0.895 44 H 0.226 0.774 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.016 -20.837 23.496 32.411 hybrid contribution -0.555 1.106 0.842 1.497 sum -8.571 -19.730 24.338 32.482 Atomic orbital electron populations 1.21808 0.93877 1.02353 1.02681 1.20186 0.96515 0.89239 1.03705 1.24299 1.06646 1.02167 0.97718 1.19969 1.04774 0.94144 0.99665 1.20760 0.96149 0.96183 0.95197 1.24579 1.17004 0.99368 0.98191 1.16942 0.77545 0.85662 0.82220 1.90843 1.49154 1.42785 1.58030 1.45880 1.68346 1.17147 1.06271 1.21385 1.00688 0.84567 0.93574 1.21760 1.02774 0.99570 0.92751 1.21820 1.01135 0.95163 0.88612 1.60038 1.34026 1.31555 1.04591 1.21673 1.01272 0.90444 0.94819 1.19810 0.84658 0.85076 0.87853 1.90517 1.52461 1.30474 1.73363 1.41871 1.57997 1.13331 1.06841 1.19760 1.41661 1.00557 0.80925 0.87856 1.25265 0.97018 0.94913 1.00753 1.69628 1.44765 1.03401 1.36498 0.85796 0.77816 0.78488 0.82217 1.19216 1.20781 1.20734 1.83022 1.59871 1.02423 1.07652 0.92282 0.91722 0.92141 0.89678 0.90450 0.83795 0.82933 0.76687 0.91072 0.90836 0.90013 0.91169 0.95175 0.90697 0.83175 0.93804 0.89520 0.77439 0.91922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.56 9.90 37.16 0.37 -0.19 16 2 C -0.06 -0.23 6.36 -27.88 -0.18 -0.41 16 3 C -0.19 -1.16 5.53 -35.86 -0.20 -1.36 16 4 C -0.15 -1.02 9.99 -41.41 -0.41 -1.43 16 5 C -0.05 -0.42 10.01 -40.44 -0.40 -0.82 16 6 C -0.27 -2.51 6.45 -36.79 -0.24 -2.74 16 7 C 0.59 6.69 7.78 -12.89 -0.10 6.59 16 8 O -0.53 -7.83 16.84 5.19 0.09 -7.74 16 9 N -0.73 -6.72 5.55 -61.65 -0.34 -7.06 16 10 C 0.12 1.15 5.67 -4.04 -0.02 1.13 16 11 C -0.13 -1.23 5.59 -26.73 -0.15 -1.38 16 12 C 0.06 0.73 5.69 -3.83 -0.02 0.71 16 13 N -0.67 -10.55 6.13 -115.06 -0.70 -11.26 16 14 C 0.05 0.89 6.17 -4.98 -0.03 0.86 16 15 C 0.44 10.43 7.82 -10.99 -0.09 10.34 16 16 O -0.58 -15.87 15.78 5.55 0.09 -15.78 16 17 N -0.56 -14.34 5.29 -10.97 -0.06 -14.40 16 18 C -0.30 -8.38 9.68 -14.94 -0.14 -8.53 16 19 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 20 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 21 N -0.90 -24.58 13.05 55.50 0.72 -23.85 16 22 Si 0.93 21.05 29.55 -169.99 -5.02 16.03 16 23 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 24 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 26 S 0.20 1.34 22.10 -107.50 -2.38 -1.03 16 27 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.06 0.18 8.14 -51.93 -0.42 -0.25 16 29 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 33 H 0.15 1.23 8.06 -52.49 -0.42 0.81 16 34 H 0.40 2.89 7.59 -40.82 -0.31 2.58 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.07 0.63 8.14 -51.92 -0.42 0.20 16 39 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.35 5.61 8.43 -39.29 -0.33 5.28 16 42 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 44 H 0.39 9.53 7.90 -40.82 -0.32 9.21 16 45 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 399.10 15.07 6.01 6.01 Total: -1.00 -33.84 399.10 -10.12 -43.97 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: -6.82 Total: 11.88 kcal Atomic # 6 Polarization: 4.96 SS G_CDS: -1.72 Total: 3.24 kcal Atomic # 7 Polarization: -56.19 SS G_CDS: -0.38 Total: -56.57 kcal Atomic # 8 Polarization: -23.69 SS G_CDS: 0.17 Total: -23.52 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: 1.34 SS G_CDS: -2.38 Total: -1.03 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -33.84 -10.12 -43.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161994769.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.622 kcal (2) G-P(sol) polarization free energy of solvation -33.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds