Wall clock time and date at job start Tue Mar 31 2020 23:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50697 * 109.47239 * 2 1 4 4 C 1.33818 * 124.52635 * 89.99815 * 3 2 1 5 5 C 1.37468 * 115.10153 * 179.97438 * 4 3 2 6 6 C 1.36648 * 113.29981 * 0.02562 * 5 4 3 7 7 C 1.46588 * 125.46001 * 180.02562 * 6 5 4 8 8 O 1.21700 * 119.99670 * 359.97438 * 7 6 5 9 9 N 1.34775 * 119.99843 * 179.97438 * 7 6 5 10 10 C 1.46497 * 119.99803 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.47028 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47247 * 179.97438 * 11 10 9 13 13 N 1.46895 * 109.47537 * 180.02562 * 12 11 10 14 14 C 1.46897 * 111.00443 * 180.02562 * 13 12 11 15 15 C 1.50702 * 109.47312 * 180.02562 * 14 13 12 16 16 O 1.21286 * 119.99914 * 359.97438 * 15 14 13 17 17 N 1.34773 * 119.99728 * 179.97438 * 15 14 13 18 18 C 1.37099 * 120.00076 * 179.97438 * 17 15 14 19 19 H 1.08001 * 119.99686 * 0.02562 * 18 17 15 20 20 C 1.38940 * 120.00477 * 179.97438 * 18 17 15 21 21 N 1.31422 * 119.99757 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00432 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.46762 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47165 * 120.00057 * 22 20 18 25 25 H 1.48491 * 109.47417 * 240.00436 * 22 20 18 26 26 S 1.70616 * 124.52099 * 269.69826 * 3 2 1 27 27 H 1.09001 * 109.47002 * 60.00070 * 1 2 3 28 28 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47050 * 300.00336 * 1 2 3 30 30 H 1.09001 * 109.46998 * 119.99373 * 2 1 3 31 31 H 1.09000 * 109.47050 * 239.99664 * 2 1 3 32 32 H 1.08001 * 122.44644 * 359.97438 * 4 3 2 33 33 H 1.07994 * 123.35265 * 179.97438 * 5 4 3 34 34 H 0.97004 * 119.99845 * 0.02562 * 9 7 6 35 35 H 1.08997 * 109.47176 * 300.00331 * 10 9 7 36 36 H 1.08998 * 109.46984 * 60.00492 * 10 9 7 37 37 H 1.08997 * 109.47421 * 300.00192 * 11 10 9 38 38 H 1.09007 * 109.46669 * 60.00510 * 11 10 9 39 39 H 1.09005 * 109.47282 * 300.00728 * 12 11 10 40 40 H 1.09001 * 109.47085 * 60.00010 * 12 11 10 41 41 H 1.00905 * 111.00090 * 56.04410 * 13 12 11 42 42 H 1.09004 * 109.46779 * 299.99652 * 14 13 12 43 43 H 1.09004 * 109.47141 * 59.99345 * 14 13 12 44 44 H 0.96997 * 120.00290 * 359.97438 * 17 15 14 45 45 H 0.97002 * 119.99488 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2852 2.1359 1.1025 5 6 2.7378 3.4142 0.8774 6 6 2.8470 3.7232 -0.4492 7 6 3.3024 5.0080 -0.9885 8 8 3.6208 5.9068 -0.2323 9 7 3.3684 5.1938 -2.3217 10 6 3.8230 6.4779 -2.8607 11 6 3.8051 6.4244 -4.3896 12 6 4.2792 7.7658 -4.9525 13 7 4.2615 7.7146 -6.4205 14 6 4.7123 8.9882 -6.9972 15 6 4.6801 8.8981 -8.5012 16 8 4.3177 7.8735 -9.0396 17 7 5.0539 9.9560 -9.2478 18 6 5.0252 9.8739 -10.6160 19 1 4.7025 8.9615 -11.0955 20 6 5.4101 10.9646 -11.3858 21 7 5.8022 12.0750 -10.8023 22 14 5.3701 10.8529 -13.2500 23 1 4.8938 9.5060 -13.6551 24 1 4.4488 11.8858 -13.7882 25 1 6.7354 11.0783 -13.7888 26 16 2.3617 2.3299 -1.4057 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5137 0.8901 31 1 1.8934 -0.5139 -0.8900 32 1 2.1440 1.7377 2.0964 33 1 2.9820 4.1058 1.6700 34 1 3.1143 4.4774 -2.9244 35 1 3.1598 7.2716 -2.5167 36 1 4.8377 6.6777 -2.5164 37 1 4.4686 5.6308 -4.7332 38 1 2.7904 6.2244 -4.7343 39 1 3.6154 8.5591 -4.6089 40 1 5.2937 7.9663 -4.6079 41 1 3.3452 7.4666 -6.7627 42 1 4.0519 9.7903 -6.6675 43 1 5.7300 9.1966 -6.6670 44 1 5.3434 10.7755 -8.8172 45 1 6.0713 12.8363 -11.3398 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161994769.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:34 Heat of formation + Delta-G solvation = -82.135312 kcal Electronic energy + Delta-G solvation = -24645.196980 eV Core-core repulsion = 20787.478411 eV Total energy + Delta-G solvation = -3857.718569 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.89195 -40.15566 -38.95128 -37.63991 -36.14735 -35.67287 -34.68797 -33.29650 -32.54802 -29.96301 -28.51069 -26.80479 -25.93604 -24.46681 -23.25344 -22.64610 -22.35887 -21.09134 -20.26342 -19.88652 -18.93385 -17.86221 -17.33262 -17.27155 -16.83193 -16.66208 -16.41436 -16.10657 -15.84534 -15.60716 -15.24156 -15.10625 -14.97599 -14.71531 -14.44749 -14.23417 -13.82977 -13.57760 -13.39805 -13.32333 -13.19341 -12.87526 -12.83388 -12.73629 -12.46285 -12.41536 -12.38923 -12.10734 -12.08832 -11.87913 -11.71273 -11.51198 -11.28425 -10.35485 -10.31912 -10.01505 -9.66929 -9.55893 -9.33506 -8.46728 -5.95654 -0.55073 0.42826 0.86285 1.34802 1.37130 1.42521 1.56778 1.99104 2.05068 2.10980 2.29851 2.93889 3.20717 3.51802 3.67061 3.76075 3.98044 4.11706 4.12925 4.15635 4.32316 4.34100 4.39626 4.47179 4.48541 4.55018 4.58697 4.67234 4.75905 4.78615 4.91121 5.04156 5.09546 5.12658 5.16406 5.19357 5.30717 5.34001 5.40881 5.41346 5.88306 6.09683 6.32529 6.41659 6.59954 7.00611 7.12589 7.56176 8.11178 8.70884 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.026914 B = 0.001370 C = 0.001311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.082902 B =20429.703505 C =21350.805129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.058 4.058 3 C -0.182 4.182 4 C -0.163 4.163 5 C -0.053 4.053 6 C -0.305 4.305 7 C 0.587 3.413 8 O -0.575 6.575 9 N -0.716 5.716 10 C 0.127 3.873 11 C -0.117 4.117 12 C 0.064 3.936 13 N -0.684 5.684 14 C 0.064 3.936 15 C 0.437 3.563 16 O -0.623 6.623 17 N -0.573 5.573 18 C -0.335 4.335 19 H 0.079 0.921 20 C -0.013 4.013 21 N -0.921 5.921 22 Si 0.994 3.006 23 H -0.273 1.273 24 H -0.271 1.271 25 H -0.271 1.271 26 S 0.230 5.770 27 H 0.052 0.948 28 H 0.077 0.923 29 H 0.057 0.943 30 H 0.099 0.901 31 H 0.086 0.914 32 H 0.165 0.835 33 H 0.148 0.852 34 H 0.409 0.591 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.043 0.957 40 H 0.080 0.920 41 H 0.346 0.654 42 H 0.067 0.933 43 H 0.104 0.896 44 H 0.396 0.604 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.060 -21.553 25.418 34.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.097 4.097 3 C -0.302 4.302 4 C -0.193 4.193 5 C -0.087 4.087 6 C -0.425 4.425 7 C 0.375 3.625 8 O -0.456 6.456 9 N -0.367 5.367 10 C 0.003 3.997 11 C -0.155 4.155 12 C -0.066 4.066 13 N -0.316 5.316 14 C -0.068 4.068 15 C 0.225 3.775 16 O -0.510 6.510 17 N -0.211 5.211 18 C -0.464 4.464 19 H 0.097 0.903 20 C -0.212 4.212 21 N -0.562 5.562 22 Si 0.817 3.183 23 H -0.197 1.197 24 H -0.196 1.196 25 H -0.196 1.196 26 S 0.499 5.501 27 H 0.071 0.929 28 H 0.096 0.904 29 H 0.076 0.924 30 H 0.118 0.882 31 H 0.104 0.896 32 H 0.182 0.818 33 H 0.165 0.835 34 H 0.245 0.755 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.061 0.939 40 H 0.098 0.902 41 H 0.164 0.836 42 H 0.085 0.915 43 H 0.122 0.878 44 H 0.230 0.770 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.474 -21.977 23.865 33.531 hybrid contribution -0.446 1.368 0.780 1.637 sum -8.920 -20.609 24.645 33.342 Atomic orbital electron populations 1.21812 0.93522 1.03095 1.02253 1.20317 0.96701 0.87855 1.04873 1.24695 1.05168 1.03026 0.97343 1.20127 1.04870 0.93406 1.00885 1.20928 0.95833 0.96983 0.94950 1.24504 1.19137 0.99734 0.99132 1.17261 0.76875 0.85990 0.82380 1.90806 1.51398 1.44406 1.59034 1.45807 1.67590 1.17381 1.05972 1.21289 1.00347 0.84648 0.93437 1.21608 1.03132 0.98407 0.92368 1.21891 1.01968 0.96680 0.86025 1.60036 1.33978 1.30634 1.06959 1.21537 1.03011 0.92207 0.90062 1.20892 0.82498 0.83765 0.90392 1.90483 1.53702 1.31818 1.74963 1.41944 1.58689 1.14082 1.06342 1.19723 1.43758 1.00432 0.82516 0.90262 1.26046 0.95974 0.94229 1.04986 1.69686 1.44556 1.03790 1.38126 0.84859 0.78309 0.78295 0.76802 1.19735 1.19592 1.19643 1.82862 1.59076 1.00903 1.07256 0.92904 0.90438 0.92404 0.88238 0.89587 0.81801 0.83467 0.75458 0.91364 0.91371 0.90176 0.90333 0.93896 0.90162 0.83570 0.91496 0.87807 0.76964 0.91306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.90 71.98 0.71 -0.09 16 2 C -0.06 -0.33 6.36 29.85 0.19 -0.14 16 3 C -0.18 -1.92 5.53 24.68 0.14 -1.78 16 4 C -0.16 -1.94 9.99 21.08 0.21 -1.73 16 5 C -0.05 -0.88 10.01 21.72 0.22 -0.67 16 6 C -0.31 -5.61 6.45 24.08 0.16 -5.46 16 7 C 0.59 13.52 7.78 86.42 0.67 14.19 16 8 O -0.57 -17.60 16.84 -4.35 -0.07 -17.67 16 9 N -0.72 -12.97 5.55 -467.18 -2.59 -15.56 16 10 C 0.13 2.31 5.67 86.38 0.49 2.80 16 11 C -0.12 -2.05 5.59 30.60 0.17 -1.88 16 12 C 0.06 1.36 5.69 86.31 0.49 1.85 16 13 N -0.68 -20.65 6.13 -517.92 -3.17 -23.83 16 14 C 0.06 2.17 6.17 85.56 0.53 2.70 16 15 C 0.44 20.77 7.82 87.66 0.69 21.45 16 16 O -0.62 -34.45 15.78 -3.05 -0.05 -34.49 16 17 N -0.57 -29.49 5.29 -307.00 -1.62 -31.11 16 18 C -0.33 -19.08 9.68 84.04 0.81 -18.26 16 19 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 20 C -0.01 -0.68 5.50 84.92 0.47 -0.21 16 21 N -0.92 -49.75 13.05 21.66 0.28 -49.46 16 22 Si 0.99 42.91 29.55 68.60 2.03 44.93 16 23 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 24 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 25 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 26 S 0.23 2.77 22.10 -56.49 -1.25 1.52 16 27 H 0.05 0.35 8.14 -2.39 -0.02 0.33 16 28 H 0.08 0.24 8.14 -2.39 -0.02 0.22 16 29 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 30 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.16 1.20 8.06 -2.91 -0.02 1.18 16 33 H 0.15 2.50 8.06 -2.91 -0.02 2.48 16 34 H 0.41 5.56 7.59 -92.71 -0.70 4.86 16 35 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 39 H 0.04 0.84 8.14 -2.38 -0.02 0.82 16 40 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.35 10.81 8.43 -89.69 -0.76 10.05 16 42 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 43 H 0.10 3.18 8.14 -2.38 -0.02 3.16 16 44 H 0.40 19.35 7.90 -92.71 -0.73 18.62 16 45 H 0.28 13.99 8.31 -92.71 -0.77 13.22 16 Total: -1.00 -73.74 399.10 -1.67 -75.41 By element: Atomic # 1 Polarization: 38.64 SS G_CDS: -1.16 Total: 37.48 kcal Atomic # 6 Polarization: 6.83 SS G_CDS: 5.94 Total: 12.77 kcal Atomic # 7 Polarization: -112.85 SS G_CDS: -7.11 Total: -119.96 kcal Atomic # 8 Polarization: -52.04 SS G_CDS: -0.12 Total: -52.16 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.93 kcal Atomic # 16 Polarization: 2.77 SS G_CDS: -1.25 Total: 1.52 kcal Total: -73.74 -1.67 -75.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161994769.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.721 kcal (2) G-P(sol) polarization free energy of solvation -73.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds