Wall clock time and date at job start Tue Mar 31 2020 22:29:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.32561 * 121.64633 * 2 1 4 4 S 1.77230 * 105.32131 * 180.19812 * 3 2 1 5 5 C 1.72206 * 94.84537 * 359.76143 * 4 3 2 6 6 O 1.21828 * 127.05893 * 180.02562 * 5 4 3 7 7 N 1.34245 * 105.88664 * 0.02562 * 5 4 3 8 8 C 1.46506 * 121.38451 * 179.97438 * 7 5 4 9 9 C 1.50696 * 109.47124 * 90.02014 * 8 7 5 10 10 O 1.21286 * 119.99875 * 0.02562 * 9 8 7 11 11 N 1.34772 * 119.99971 * 179.72482 * 9 8 7 12 12 C 1.46500 * 120.00103 * 180.27682 * 11 9 8 13 13 C 1.53005 * 109.46880 * 180.02562 * 12 11 9 14 14 C 1.53002 * 109.46919 * 175.45812 * 13 12 11 15 15 C 1.52996 * 115.54904 * 279.32664 * 14 13 12 16 16 N 1.46502 * 109.47128 * 294.94841 * 15 14 13 17 17 C 1.36939 * 120.00335 * 174.37208 * 16 15 14 18 18 H 1.07999 * 119.99652 * 0.02562 * 17 16 15 19 19 C 1.38804 * 120.00059 * 180.02562 * 17 16 15 20 20 N 1.31624 * 120.00327 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 120.00071 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.46683 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47493 * 119.99789 * 21 19 17 24 24 H 1.48505 * 109.47124 * 240.00111 * 21 19 17 25 25 C 1.53003 * 117.49961 * 133.61691 * 14 13 12 26 26 C 1.53000 * 117.50002 * 64.99086 * 14 13 12 27 27 H 1.08997 * 109.47096 * 270.24659 * 1 2 3 28 28 H 1.09002 * 109.47049 * 30.24080 * 1 2 3 29 29 H 1.08997 * 109.46981 * 150.23844 * 1 2 3 30 30 H 1.08003 * 127.34437 * 359.93706 * 3 2 1 31 31 H 1.08999 * 109.46700 * 330.02071 * 8 7 5 32 32 H 1.08996 * 109.46760 * 210.02478 * 8 7 5 33 33 H 0.97001 * 120.00025 * 0.27925 * 11 9 8 34 34 H 1.08994 * 109.47468 * 299.99778 * 12 11 9 35 35 H 1.08999 * 109.47215 * 60.00623 * 12 11 9 36 36 H 1.09004 * 109.47016 * 295.45540 * 13 12 11 37 37 H 1.08994 * 109.47217 * 55.46058 * 13 12 11 38 38 H 1.08996 * 109.47342 * 54.94811 * 15 14 13 39 39 H 1.09004 * 109.47452 * 174.95466 * 15 14 13 40 40 H 0.96999 * 119.99824 * 354.37619 * 16 15 14 41 41 H 0.96997 * 119.99725 * 180.02562 * 20 19 17 42 42 H 1.08993 * 117.49707 * 359.97438 * 25 14 13 43 43 H 1.08997 * 117.49680 * 145.02347 * 25 14 13 44 44 H 1.09002 * 117.50237 * 214.97599 * 26 14 13 45 45 H 1.09006 * 117.49836 * 0.02562 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2026 1.1285 0.0000 4 16 3.9034 0.6303 -0.0059 5 6 3.5607 -1.0573 -0.0008 6 8 4.3674 -1.9703 -0.0017 7 7 2.2222 -1.1604 0.0043 8 6 1.5577 -2.4661 0.0092 9 6 1.3346 -2.9109 1.4316 10 8 1.6949 -2.2065 2.3509 11 7 0.7294 -4.0887 1.6823 12 6 0.5071 -4.5184 3.0651 13 6 -0.1914 -5.8797 3.0701 14 6 -0.3219 -6.3806 4.5099 15 6 0.9314 -7.0317 5.0982 16 7 1.2336 -8.2621 4.3627 17 6 2.3804 -8.9590 4.6357 18 1 3.0619 -8.6016 5.3936 19 6 2.6669 -10.1245 3.9385 20 7 1.8366 -10.5597 3.0146 21 14 4.2310 -11.0754 4.3114 22 1 4.9887 -10.3810 5.3833 23 1 3.8813 -12.4469 4.7608 24 1 5.0666 -11.1539 3.0863 25 6 -1.6787 -6.9397 4.9431 26 6 -1.2125 -5.5769 5.4595 27 1 -0.3633 0.0044 1.0276 28 1 -0.3633 0.8878 -0.5176 29 1 -0.3633 -0.8921 -0.5101 30 1 1.8154 2.1367 -0.0009 31 1 2.1843 -3.1946 -0.5053 32 1 0.5980 -2.3871 -0.5016 33 1 0.4410 -4.6520 0.9471 34 1 1.4650 -4.6001 3.5787 35 1 -0.1184 -3.7869 3.5768 36 1 -1.1830 -5.7809 2.6284 37 1 0.3956 -6.5914 2.4896 38 1 1.7720 -6.3428 5.0148 39 1 0.7589 -7.2690 6.1480 40 1 0.6214 -8.5832 3.6823 41 1 2.0368 -11.3744 2.5277 42 1 -2.4783 -6.9502 4.2026 43 1 -1.6785 -7.7716 5.6474 44 1 -0.9058 -5.5124 6.5035 45 1 -1.7057 -4.6914 5.0584 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168088285.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:29 Heat of formation + Delta-G solvation = -0.433540 kcal Electronic energy + Delta-G solvation = -26759.052777 eV Core-core repulsion = 22904.877063 eV Total energy + Delta-G solvation = -3854.175714 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.48894 -39.47203 -38.27154 -37.75142 -34.97127 -33.93134 -32.90132 -31.06731 -30.76286 -29.70334 -27.06280 -25.94163 -24.22644 -23.30469 -22.76697 -21.87544 -21.26086 -20.44572 -18.71011 -18.34344 -17.68998 -17.47472 -17.05713 -16.07435 -15.87221 -15.66700 -15.34477 -15.02033 -14.60243 -14.43648 -14.38181 -14.06955 -14.00722 -13.77568 -13.55848 -13.12317 -12.99414 -12.74308 -12.39884 -12.24817 -11.97496 -11.88994 -11.50795 -11.42102 -11.17931 -10.98076 -10.85039 -10.68051 -10.43213 -10.29811 -10.12234 -9.91806 -9.73818 -9.62650 -9.35850 -9.16706 -8.86104 -8.19221 -6.90829 -5.76810 -3.04581 0.71126 1.14000 1.52490 1.87198 2.34834 2.39208 3.04836 3.44119 3.50464 3.52201 4.01233 4.08210 4.30075 4.42159 4.61676 4.62889 4.70913 4.96115 5.01863 5.03296 5.06682 5.10171 5.16164 5.25528 5.29279 5.47666 5.56878 5.62809 5.68044 5.76269 5.86615 6.08743 6.13799 6.19550 6.31658 6.39065 6.39320 6.42701 6.50691 6.73971 6.81964 7.05986 7.29255 7.71567 7.97747 8.42507 9.54410 10.11905 10.47709 11.46110 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012340 B = 0.002509 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.570758 B =11156.746919 C =12759.433700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.110 3.890 3 C -0.240 4.240 4 S 0.005 5.995 5 C 0.486 3.514 6 O -0.466 6.466 7 N -0.517 5.517 8 C 0.078 3.922 9 C 0.497 3.503 10 O -0.527 6.527 11 N -0.720 5.720 12 C 0.126 3.874 13 C -0.091 4.091 14 C -0.119 4.119 15 C 0.187 3.813 16 N -0.727 5.727 17 C -0.237 4.237 18 H 0.070 0.930 19 C -0.014 4.014 20 N -0.934 5.934 21 Si 0.905 3.095 22 H -0.280 1.280 23 H -0.292 1.292 24 H -0.292 1.292 25 C -0.164 4.164 26 C -0.178 4.178 27 H 0.088 0.912 28 H 0.092 0.908 29 H 0.074 0.926 30 H 0.192 0.808 31 H 0.126 0.874 32 H 0.124 0.876 33 H 0.403 0.597 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.088 0.912 38 H 0.026 0.974 39 H 0.017 0.983 40 H 0.384 0.616 41 H 0.254 0.746 42 H 0.088 0.912 43 H 0.096 0.904 44 H 0.092 0.908 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.605 24.147 -9.287 27.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.000 4.000 3 C -0.378 4.378 4 S 0.248 5.752 5 C 0.168 3.832 6 O -0.345 6.345 7 N -0.238 5.238 8 C -0.051 4.051 9 C 0.280 3.720 10 O -0.402 6.402 11 N -0.372 5.372 12 C 0.003 3.997 13 C -0.128 4.128 14 C -0.120 4.120 15 C 0.060 3.940 16 N -0.371 5.371 17 C -0.368 4.368 18 H 0.088 0.912 19 C -0.210 4.210 20 N -0.583 5.583 21 Si 0.737 3.263 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.201 4.201 26 C -0.215 4.215 27 H 0.106 0.894 28 H 0.110 0.890 29 H 0.093 0.907 30 H 0.209 0.791 31 H 0.144 0.856 32 H 0.142 0.858 33 H 0.237 0.763 34 H 0.092 0.908 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.107 0.893 38 H 0.044 0.956 39 H 0.035 0.965 40 H 0.218 0.782 41 H 0.064 0.936 42 H 0.107 0.893 43 H 0.114 0.886 44 H 0.111 0.889 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -7.457 24.683 -8.531 27.159 hybrid contribution -0.681 -1.829 -0.301 1.974 sum -8.138 22.854 -8.831 25.817 Atomic orbital electron populations 1.20804 0.86715 1.04237 1.04275 1.19357 0.95730 0.84786 1.00153 1.24830 0.93290 1.01188 1.18540 1.85129 1.08357 1.00733 1.80952 1.21584 0.83498 0.95911 0.82226 1.91005 1.48479 1.42394 1.52599 1.45603 1.06334 1.06543 1.65274 1.21750 1.01390 0.85468 0.96520 1.20640 0.78266 0.81983 0.91076 1.90759 1.49617 1.53986 1.45872 1.45957 1.60612 1.20600 1.10073 1.21407 1.01409 0.95691 0.81213 1.21255 1.00410 0.95382 0.95788 1.21561 0.93439 1.02825 0.94206 1.20184 0.91465 0.88521 0.93863 1.42291 1.25278 1.24478 1.45089 1.19280 0.97944 1.03359 1.16199 0.91223 1.24710 0.98737 0.98535 0.98997 1.69668 1.37130 1.24367 1.27108 0.86137 0.82946 0.79826 0.77438 1.20556 1.21895 1.21867 1.22965 0.96811 0.96803 1.03499 1.22977 1.04152 0.94969 0.99430 0.89384 0.88966 0.90714 0.79096 0.85573 0.85833 0.76323 0.90836 0.91608 0.91887 0.89342 0.95602 0.96532 0.78184 0.93644 0.89310 0.88560 0.88925 0.89305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.45 9.70 36.01 0.35 -0.10 16 2 C 0.11 0.89 6.59 -82.51 -0.54 0.35 16 3 C -0.24 -1.82 11.24 28.82 0.32 -1.49 16 4 S 0.01 0.06 22.97 -107.50 -2.47 -2.41 16 5 C 0.49 6.70 8.27 53.82 0.45 7.14 16 6 O -0.47 -8.11 17.55 5.07 0.09 -8.02 16 7 N -0.52 -5.57 2.09 -118.57 -0.25 -5.82 16 8 C 0.08 0.70 5.75 -5.19 -0.03 0.67 16 9 C 0.50 6.17 7.90 -10.99 -0.09 6.09 16 10 O -0.53 -8.85 16.43 5.55 0.09 -8.76 16 11 N -0.72 -8.01 5.56 -60.30 -0.33 -8.34 16 12 C 0.13 1.67 5.51 -4.04 -0.02 1.65 16 13 C -0.09 -1.24 5.24 -26.73 -0.14 -1.38 16 14 C -0.12 -1.85 1.52 -154.51 -0.23 -2.08 16 15 C 0.19 3.78 6.10 -4.04 -0.02 3.75 16 16 N -0.73 -18.15 5.30 -59.91 -0.32 -18.47 16 17 C -0.24 -6.66 9.99 -15.06 -0.15 -6.81 16 18 H 0.07 1.94 7.83 -52.49 -0.41 1.52 16 19 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 20 N -0.93 -28.04 13.06 55.49 0.72 -27.32 16 21 Si 0.91 22.74 29.55 -169.99 -5.02 17.71 16 22 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 23 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 24 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 25 C -0.16 -2.32 9.90 -26.73 -0.26 -2.58 16 26 C -0.18 -2.29 9.57 -26.73 -0.26 -2.54 16 27 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.09 0.20 8.10 -51.93 -0.42 -0.22 16 29 H 0.07 0.24 6.18 -51.93 -0.32 -0.08 16 30 H 0.19 0.80 8.06 -52.48 -0.42 0.38 16 31 H 0.13 1.10 7.80 -51.93 -0.41 0.70 16 32 H 0.12 0.55 6.12 -51.93 -0.32 0.24 16 33 H 0.40 3.31 8.47 -40.82 -0.35 2.97 16 34 H 0.07 1.21 7.69 -51.93 -0.40 0.81 16 35 H 0.07 0.84 7.80 -51.93 -0.41 0.44 16 36 H 0.06 0.72 7.94 -51.93 -0.41 0.30 16 37 H 0.09 1.44 7.64 -51.93 -0.40 1.04 16 38 H 0.03 0.55 7.69 -51.93 -0.40 0.15 16 39 H 0.02 0.35 8.09 -51.93 -0.42 -0.07 16 40 H 0.38 9.99 7.46 -40.82 -0.30 9.68 16 41 H 0.25 7.37 8.31 -40.82 -0.34 7.04 16 42 H 0.09 1.11 8.08 -51.93 -0.42 0.69 16 43 H 0.10 1.49 8.14 -51.93 -0.42 1.06 16 44 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 45 H 0.09 0.99 7.98 -51.93 -0.41 0.57 16 LS Contribution 392.26 15.07 5.91 5.91 Total: -1.00 -36.80 392.26 -8.92 -45.72 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -6.62 Total: 7.64 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: -0.73 Total: 2.15 kcal Atomic # 7 Polarization: -59.77 SS G_CDS: -0.18 Total: -59.95 kcal Atomic # 8 Polarization: -16.96 SS G_CDS: 0.18 Total: -16.78 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.71 kcal Atomic # 16 Polarization: 0.06 SS G_CDS: -2.47 Total: -2.41 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -36.80 -8.92 -45.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168088285.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.290 kcal (2) G-P(sol) polarization free energy of solvation -36.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds