Wall clock time and date at job start Tue Mar 31 2020 22:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.32561 * 121.64633 * 2 1 4 4 S 1.77230 * 105.32131 * 180.19812 * 3 2 1 5 5 C 1.72206 * 94.84537 * 359.76143 * 4 3 2 6 6 O 1.21828 * 127.05893 * 180.02562 * 5 4 3 7 7 N 1.34245 * 105.88664 * 0.02562 * 5 4 3 8 8 C 1.46506 * 121.38451 * 179.97438 * 7 5 4 9 9 C 1.50696 * 109.47124 * 90.02014 * 8 7 5 10 10 O 1.21286 * 119.99875 * 0.02562 * 9 8 7 11 11 N 1.34772 * 119.99971 * 179.72482 * 9 8 7 12 12 C 1.46500 * 120.00103 * 180.27682 * 11 9 8 13 13 C 1.53005 * 109.46880 * 180.02562 * 12 11 9 14 14 C 1.53002 * 109.46919 * 175.45812 * 13 12 11 15 15 C 1.52996 * 115.54904 * 279.32664 * 14 13 12 16 16 N 1.46502 * 109.47128 * 294.94841 * 15 14 13 17 17 C 1.36939 * 120.00335 * 174.37208 * 16 15 14 18 18 H 1.07999 * 119.99652 * 0.02562 * 17 16 15 19 19 C 1.38804 * 120.00059 * 180.02562 * 17 16 15 20 20 N 1.31624 * 120.00327 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 120.00071 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.46683 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47493 * 119.99789 * 21 19 17 24 24 H 1.48505 * 109.47124 * 240.00111 * 21 19 17 25 25 C 1.53003 * 117.49961 * 133.61691 * 14 13 12 26 26 C 1.53000 * 117.50002 * 64.99086 * 14 13 12 27 27 H 1.08997 * 109.47096 * 270.24659 * 1 2 3 28 28 H 1.09002 * 109.47049 * 30.24080 * 1 2 3 29 29 H 1.08997 * 109.46981 * 150.23844 * 1 2 3 30 30 H 1.08003 * 127.34437 * 359.93706 * 3 2 1 31 31 H 1.08999 * 109.46700 * 330.02071 * 8 7 5 32 32 H 1.08996 * 109.46760 * 210.02478 * 8 7 5 33 33 H 0.97001 * 120.00025 * 0.27925 * 11 9 8 34 34 H 1.08994 * 109.47468 * 299.99778 * 12 11 9 35 35 H 1.08999 * 109.47215 * 60.00623 * 12 11 9 36 36 H 1.09004 * 109.47016 * 295.45540 * 13 12 11 37 37 H 1.08994 * 109.47217 * 55.46058 * 13 12 11 38 38 H 1.08996 * 109.47342 * 54.94811 * 15 14 13 39 39 H 1.09004 * 109.47452 * 174.95466 * 15 14 13 40 40 H 0.96999 * 119.99824 * 354.37619 * 16 15 14 41 41 H 0.96997 * 119.99725 * 180.02562 * 20 19 17 42 42 H 1.08993 * 117.49707 * 359.97438 * 25 14 13 43 43 H 1.08997 * 117.49680 * 145.02347 * 25 14 13 44 44 H 1.09002 * 117.50237 * 214.97599 * 26 14 13 45 45 H 1.09006 * 117.49836 * 0.02562 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2026 1.1285 0.0000 4 16 3.9034 0.6303 -0.0059 5 6 3.5607 -1.0573 -0.0008 6 8 4.3674 -1.9703 -0.0017 7 7 2.2222 -1.1604 0.0043 8 6 1.5577 -2.4661 0.0092 9 6 1.3346 -2.9109 1.4316 10 8 1.6949 -2.2065 2.3509 11 7 0.7294 -4.0887 1.6823 12 6 0.5071 -4.5184 3.0651 13 6 -0.1914 -5.8797 3.0701 14 6 -0.3219 -6.3806 4.5099 15 6 0.9314 -7.0317 5.0982 16 7 1.2336 -8.2621 4.3627 17 6 2.3804 -8.9590 4.6357 18 1 3.0619 -8.6016 5.3936 19 6 2.6669 -10.1245 3.9385 20 7 1.8366 -10.5597 3.0146 21 14 4.2310 -11.0754 4.3114 22 1 4.9887 -10.3810 5.3833 23 1 3.8813 -12.4469 4.7608 24 1 5.0666 -11.1539 3.0863 25 6 -1.6787 -6.9397 4.9431 26 6 -1.2125 -5.5769 5.4595 27 1 -0.3633 0.0044 1.0276 28 1 -0.3633 0.8878 -0.5176 29 1 -0.3633 -0.8921 -0.5101 30 1 1.8154 2.1367 -0.0009 31 1 2.1843 -3.1946 -0.5053 32 1 0.5980 -2.3871 -0.5016 33 1 0.4410 -4.6520 0.9471 34 1 1.4650 -4.6001 3.5787 35 1 -0.1184 -3.7869 3.5768 36 1 -1.1830 -5.7809 2.6284 37 1 0.3956 -6.5914 2.4896 38 1 1.7720 -6.3428 5.0148 39 1 0.7589 -7.2690 6.1480 40 1 0.6214 -8.5832 3.6823 41 1 2.0368 -11.3744 2.5277 42 1 -2.4783 -6.9502 4.2026 43 1 -1.6785 -7.7716 5.6474 44 1 -0.9058 -5.5124 6.5035 45 1 -1.7057 -4.6914 5.0584 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168088285.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:28 Heat of formation + Delta-G solvation = -26.746436 kcal Electronic energy + Delta-G solvation = -26760.193790 eV Core-core repulsion = 22904.877063 eV Total energy + Delta-G solvation = -3855.316727 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.32121 -40.50750 -39.49904 -38.69631 -36.18191 -35.76803 -33.61173 -32.80656 -31.87478 -30.56828 -27.97841 -27.53666 -25.16912 -24.66147 -24.29677 -23.00881 -22.18916 -21.33254 -20.03643 -19.14037 -19.07446 -18.57712 -18.35942 -17.11410 -16.86983 -16.76188 -16.60309 -16.29663 -15.94923 -15.66238 -15.32426 -15.19189 -14.93884 -14.80696 -14.59310 -14.40971 -14.27295 -13.87200 -13.56715 -13.21037 -13.04029 -12.96262 -12.84535 -12.60947 -12.56063 -12.28087 -12.14571 -12.12252 -11.97121 -11.86281 -11.41768 -11.29357 -11.11355 -10.92793 -10.64456 -10.49208 -10.20769 -9.00145 -8.98657 -7.98253 -5.25372 -0.16859 0.37440 0.83179 1.03880 1.39587 1.43337 1.44330 1.53840 1.62374 2.15012 2.51262 2.88908 3.34804 3.45870 3.61876 3.73348 3.82579 3.84620 3.96831 4.00932 4.06960 4.22206 4.24193 4.38922 4.47154 4.55027 4.61685 4.66550 4.75003 4.83743 4.91226 4.93151 4.94640 5.08068 5.14171 5.25395 5.26837 5.34023 5.34966 5.37719 5.46160 5.65589 6.15662 6.24955 6.39895 7.05882 7.32217 8.07856 8.34324 9.24996 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012340 B = 0.002509 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.570758 B =11156.746919 C =12759.433700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.095 3.905 3 C -0.226 4.226 4 S -0.006 6.006 5 C 0.462 3.538 6 O -0.525 6.525 7 N -0.517 5.517 8 C 0.079 3.921 9 C 0.495 3.505 10 O -0.576 6.576 11 N -0.710 5.710 12 C 0.135 3.865 13 C -0.076 4.076 14 C -0.142 4.142 15 C 0.187 3.813 16 N -0.734 5.734 17 C -0.246 4.246 18 H 0.067 0.933 19 C -0.070 4.070 20 N -0.963 5.963 21 Si 0.967 3.033 22 H -0.272 1.272 23 H -0.289 1.289 24 H -0.293 1.293 25 C -0.161 4.161 26 C -0.150 4.150 27 H 0.083 0.917 28 H 0.122 0.878 29 H 0.091 0.909 30 H 0.231 0.769 31 H 0.126 0.874 32 H 0.177 0.823 33 H 0.418 0.582 34 H 0.032 0.968 35 H 0.078 0.922 36 H 0.098 0.902 37 H 0.057 0.943 38 H 0.012 0.988 39 H 0.011 0.989 40 H 0.378 0.622 41 H 0.252 0.748 42 H 0.112 0.888 43 H 0.078 0.922 44 H 0.092 0.908 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.279 26.074 -10.050 30.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.014 4.014 3 C -0.362 4.362 4 S 0.237 5.763 5 C 0.146 3.854 6 O -0.409 6.409 7 N -0.237 5.237 8 C -0.050 4.050 9 C 0.280 3.720 10 O -0.455 6.455 11 N -0.362 5.362 12 C 0.012 3.988 13 C -0.114 4.114 14 C -0.143 4.143 15 C 0.060 3.940 16 N -0.377 5.377 17 C -0.378 4.378 18 H 0.085 0.915 19 C -0.262 4.262 20 N -0.614 5.614 21 Si 0.797 3.203 22 H -0.197 1.197 23 H -0.216 1.216 24 H -0.220 1.220 25 C -0.199 4.199 26 C -0.187 4.187 27 H 0.101 0.899 28 H 0.140 0.860 29 H 0.110 0.890 30 H 0.247 0.753 31 H 0.144 0.856 32 H 0.194 0.806 33 H 0.256 0.744 34 H 0.051 0.949 35 H 0.097 0.903 36 H 0.116 0.884 37 H 0.076 0.924 38 H 0.030 0.970 39 H 0.029 0.971 40 H 0.210 0.790 41 H 0.061 0.939 42 H 0.131 0.869 43 H 0.096 0.904 44 H 0.111 0.889 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -10.189 26.645 -9.294 30.003 hybrid contribution 0.113 -2.324 0.000 2.327 sum -10.076 24.322 -9.294 27.919 Atomic orbital electron populations 1.20960 0.83486 1.06596 1.04589 1.20064 0.97601 0.83808 0.99896 1.25423 0.90461 1.02855 1.17501 1.85107 1.11762 0.99086 1.80344 1.22038 0.84390 0.96477 0.82524 1.90951 1.50146 1.44350 1.55441 1.45729 1.05663 1.08096 1.64176 1.21967 1.03731 0.84905 0.94358 1.21235 0.77114 0.81571 0.92051 1.90735 1.51608 1.55506 1.47648 1.45845 1.60073 1.20484 1.09827 1.21176 0.99463 0.96015 0.82191 1.21107 1.01648 0.94301 0.94316 1.21405 0.92016 1.05002 0.95851 1.20231 0.93623 0.86748 0.93356 1.42412 1.24304 1.25691 1.45264 1.19601 0.98821 1.03651 1.15718 0.91535 1.25454 1.01778 0.99674 0.99337 1.69794 1.38723 1.24741 1.28126 0.85167 0.79546 0.78417 0.77208 1.19688 1.21610 1.21982 1.23016 0.96112 0.97093 1.03636 1.23068 1.01550 0.95292 0.98832 0.89867 0.85989 0.89045 0.75277 0.85645 0.80596 0.74445 0.94902 0.90339 0.88383 0.92434 0.97030 0.97096 0.78967 0.93924 0.86947 0.90379 0.88922 0.86347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.46 9.70 71.24 0.69 0.23 16 2 C 0.10 1.30 6.59 40.71 0.27 1.57 16 3 C -0.23 -2.83 11.24 66.67 0.75 -2.08 16 4 S -0.01 -0.13 22.97 -56.49 -1.30 -1.43 16 5 C 0.46 13.16 8.27 129.87 1.07 14.24 16 6 O -0.53 -19.56 17.55 -4.76 -0.08 -19.65 16 7 N -0.52 -10.67 2.09 -647.49 -1.35 -12.02 16 8 C 0.08 1.29 5.75 85.63 0.49 1.78 16 9 C 0.49 11.95 7.90 87.66 0.69 12.64 16 10 O -0.58 -19.51 16.43 -3.05 -0.05 -19.56 16 11 N -0.71 -15.00 5.56 -463.06 -2.57 -17.57 16 12 C 0.14 3.52 5.51 86.38 0.48 3.99 16 13 C -0.08 -1.99 5.24 30.60 0.16 -1.83 16 14 C -0.14 -4.28 1.52 -52.18 -0.08 -4.35 16 15 C 0.19 7.74 6.10 86.38 0.53 8.26 16 16 N -0.73 -37.63 5.30 -343.46 -1.82 -39.45 16 17 C -0.25 -14.15 9.99 84.03 0.84 -13.31 16 18 H 0.07 3.78 7.83 -2.91 -0.02 3.76 16 19 C -0.07 -4.07 5.50 84.86 0.47 -3.61 16 20 N -0.96 -58.77 13.06 21.65 0.28 -58.48 16 21 Si 0.97 47.40 29.55 68.60 2.03 49.43 16 22 H -0.27 -12.81 7.11 99.48 0.71 -12.11 16 23 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 24 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 25 C -0.16 -4.25 9.90 30.60 0.30 -3.95 16 26 C -0.15 -3.47 9.57 30.60 0.29 -3.18 16 27 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.12 -0.11 8.10 -2.39 -0.02 -0.13 16 29 H 0.09 0.13 6.18 -2.39 -0.01 0.12 16 30 H 0.23 0.94 8.06 -2.91 -0.02 0.92 16 31 H 0.13 2.14 7.80 -2.39 -0.02 2.12 16 32 H 0.18 0.90 6.12 -2.39 -0.01 0.89 16 33 H 0.42 6.13 8.47 -92.71 -0.79 5.34 16 34 H 0.03 1.12 7.69 -2.39 -0.02 1.10 16 35 H 0.08 1.86 7.80 -2.39 -0.02 1.84 16 36 H 0.10 1.89 7.94 -2.39 -0.02 1.87 16 37 H 0.06 1.88 7.64 -2.39 -0.02 1.86 16 38 H 0.01 0.52 7.69 -2.39 -0.02 0.50 16 39 H 0.01 0.47 8.09 -2.38 -0.02 0.45 16 40 H 0.38 20.14 7.46 -92.71 -0.69 19.45 16 41 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 42 H 0.11 2.44 8.08 -2.39 -0.02 2.42 16 43 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 44 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 45 H 0.12 2.10 7.98 -2.38 -0.02 2.08 16 Total: -1.00 -85.26 392.26 1.64 -83.63 By element: Atomic # 1 Polarization: 25.15 SS G_CDS: -0.45 Total: 24.70 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: 6.95 Total: 10.41 kcal Atomic # 7 Polarization: -122.07 SS G_CDS: -5.46 Total: -127.53 kcal Atomic # 8 Polarization: -39.07 SS G_CDS: -0.13 Total: -39.21 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 2.03 Total: 49.43 kcal Atomic # 16 Polarization: -0.13 SS G_CDS: -1.30 Total: -1.43 kcal Total: -85.26 1.64 -83.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168088285.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.880 kcal (2) G-P(sol) polarization free energy of solvation -85.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds