Wall clock time and date at job start Tue Mar 31 2020 22:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30261 * 125.61597 * 2 1 4 4 C 1.34480 * 108.69810 * 179.97438 * 3 2 1 5 5 C 1.50701 * 126.16251 * 179.97438 * 4 3 2 6 6 N 1.46896 * 109.47271 * 275.02687 * 5 4 3 7 7 C 1.46203 * 110.99965 * 197.08316 * 6 5 4 8 8 C 1.51271 * 109.10317 * 144.76950 * 7 6 5 9 9 C 1.54168 * 109.77405 * 92.30669 * 8 7 6 10 10 N 1.47618 * 111.09616 * 320.24181 * 9 8 7 11 11 C 1.34777 * 118.74495 * 138.20128 * 10 9 8 12 12 O 1.21278 * 119.99854 * 179.73911 * 11 10 9 13 13 C 1.50703 * 120.00161 * 359.73218 * 11 10 9 14 14 S 1.81002 * 109.47178 * 180.02562 * 13 11 10 15 15 C 1.76198 * 100.00092 * 180.02562 * 14 13 11 16 16 H 1.08004 * 120.00019 * 0.02562 * 15 14 13 17 17 C 1.38795 * 119.99810 * 179.97438 * 15 14 13 18 18 N 1.31626 * 120.00234 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99664 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47231 * 60.00264 * 19 17 15 21 21 H 1.48505 * 109.47271 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47260 * 299.99689 * 19 17 15 23 23 C 1.44879 * 122.50546 * 317.92025 * 10 9 8 24 24 C 1.41443 * 111.00268 * 66.04407 * 6 5 4 25 25 C 1.34323 * 107.66983 * 0.26374 * 4 3 2 26 26 O 1.33973 * 125.62315 * 179.97438 * 2 1 3 27 27 H 1.09002 * 109.46832 * 90.00579 * 1 2 3 28 28 H 1.08999 * 109.46976 * 209.99730 * 1 2 3 29 29 H 1.08993 * 109.47558 * 330.00127 * 1 2 3 30 30 H 1.09003 * 109.47072 * 155.02164 * 5 4 3 31 31 H 1.09003 * 109.47007 * 35.02602 * 5 4 3 32 32 H 1.08995 * 109.53063 * 264.65937 * 7 6 5 33 33 H 1.09003 * 109.53330 * 24.80810 * 7 6 5 34 34 H 1.08997 * 109.44452 * 212.45125 * 8 7 6 35 35 H 1.09001 * 109.44506 * 332.38887 * 8 7 6 36 36 H 1.09003 * 109.31613 * 199.77649 * 9 8 7 37 37 H 1.09001 * 109.12489 * 80.59061 * 9 8 7 38 38 H 1.09002 * 109.47152 * 60.00245 * 13 11 10 39 39 H 1.09001 * 109.46980 * 300.00345 * 13 11 10 40 40 H 0.97005 * 119.99806 * 179.97438 * 18 17 15 41 41 H 1.08997 * 109.43848 * 210.06919 * 23 10 9 42 42 H 1.09001 * 109.43846 * 329.98716 * 23 10 9 43 43 H 1.09000 * 109.38054 * 71.52677 * 24 6 5 44 44 H 1.08999 * 109.38230 * 311.84810 * 24 6 5 45 45 H 1.08006 * 126.44261 * 179.73756 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2655 1.0589 0.0000 4 6 3.5521 0.6676 0.0006 5 6 4.7570 1.5729 0.0002 6 7 5.0759 1.9631 -1.3796 7 6 6.4358 2.4916 -1.4736 8 6 7.0358 2.0815 -2.8002 9 6 6.7789 3.1802 -3.8508 10 7 5.4228 3.7455 -3.7078 11 6 5.2608 5.0785 -3.8225 12 8 4.1560 5.5667 -3.7137 13 6 6.4526 5.9625 -4.0857 14 16 5.9139 7.6876 -4.1859 15 6 7.4608 8.4740 -4.4911 16 1 8.3624 7.8835 -4.5611 17 6 7.5206 9.8524 -4.6427 18 7 6.4216 10.5720 -4.5590 19 14 9.1605 10.6860 -4.9670 20 1 9.7419 10.1608 -6.2286 21 1 8.9553 12.1518 -5.0886 22 1 10.0882 10.4084 -3.8411 23 6 4.2585 2.9213 -3.4548 24 6 4.0504 2.7676 -1.9288 25 6 3.5698 -0.6755 -0.0050 26 8 2.2873 -1.0890 0.0005 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3634 0.8899 0.5138 30 1 5.6069 1.0466 0.4348 31 1 4.5418 2.4643 0.5894 32 1 6.4095 3.5792 -1.4061 33 1 7.0398 2.0905 -0.6596 34 1 8.1095 1.9351 -2.6831 35 1 6.5769 1.1507 -3.1337 36 1 6.8853 2.7562 -4.8493 37 1 7.5127 3.9759 -3.7221 38 1 6.9196 5.6721 -5.0268 39 1 7.1722 5.8535 -3.2742 40 1 6.4635 11.5354 -4.6646 41 1 3.3790 3.3908 -3.8953 42 1 4.4063 1.9378 -3.9008 43 1 4.0720 3.7513 -1.4598 44 1 3.0839 2.3000 -1.7406 45 1 4.4470 -1.3056 -0.0101 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194918835.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:07 Heat of formation + Delta-G solvation = 6.658564 kcal Electronic energy + Delta-G solvation = -27150.812610 eV Core-core repulsion = 23296.944433 eV Total energy + Delta-G solvation = -3853.868178 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.58287 -40.15818 -38.13730 -35.70286 -34.61041 -32.73772 -32.53336 -32.41148 -30.32751 -28.80483 -27.36208 -26.45487 -25.50445 -24.92337 -22.42782 -21.85245 -21.22227 -20.58246 -18.86359 -17.71542 -17.32807 -17.13556 -16.63063 -16.20278 -15.80894 -15.64026 -15.14749 -14.99476 -14.79180 -14.42430 -14.08228 -13.75260 -13.67421 -13.50497 -13.44868 -13.00907 -12.97077 -12.65856 -12.60123 -12.23325 -11.98264 -11.64554 -11.55688 -11.39841 -11.31758 -11.06044 -11.03086 -10.99963 -10.88967 -10.74429 -10.71922 -9.78952 -9.27371 -9.04606 -9.02417 -8.47391 -8.30098 -8.19760 -6.48136 -6.19844 -3.90378 1.20688 2.34131 2.50374 3.01681 3.11359 3.24049 3.27356 3.30296 3.63587 3.64788 3.92727 4.21855 4.45978 4.62274 4.66337 4.86000 4.87288 4.95459 5.01464 5.04629 5.12017 5.14978 5.16465 5.28178 5.38584 5.43145 5.48178 5.51495 5.56855 5.62204 5.66959 5.71950 5.77497 5.80902 5.89979 5.94344 6.06124 6.07784 6.10387 6.14958 6.82118 6.97089 7.22706 7.51665 7.59708 7.61621 8.36353 8.63861 9.25059 10.87504 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.022786 B = 0.002290 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.546868 B =12223.752916 C =12798.190397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.188 3.812 3 N -0.476 5.476 4 C -0.003 4.003 5 C 0.142 3.858 6 N -0.557 5.557 7 C 0.071 3.929 8 C -0.128 4.128 9 C 0.107 3.893 10 N -0.616 5.616 11 C 0.527 3.473 12 O -0.515 6.515 13 C -0.150 4.150 14 S -0.062 6.062 15 C -0.535 4.535 16 H 0.071 0.929 17 C 0.073 3.927 18 N -0.868 5.868 19 Si 0.918 3.082 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.274 1.274 23 C 0.124 3.876 24 C 0.056 3.944 25 C -0.062 4.062 26 O -0.206 6.206 27 H 0.093 0.907 28 H 0.086 0.914 29 H 0.101 0.899 30 H 0.089 0.911 31 H 0.053 0.947 32 H 0.048 0.952 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.064 0.936 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.269 0.731 41 H 0.086 0.914 42 H 0.075 0.925 43 H 0.033 0.967 44 H 0.091 0.909 45 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.730 -26.924 9.036 28.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.019 4.019 3 N -0.207 5.207 4 C -0.123 4.123 5 C 0.014 3.986 6 N -0.282 5.282 7 C -0.056 4.056 8 C -0.167 4.167 9 C -0.016 4.016 10 N -0.352 5.352 11 C 0.315 3.685 12 O -0.390 6.390 13 C -0.300 4.300 14 S 0.165 5.835 15 C -0.683 4.683 16 H 0.090 0.910 17 C -0.136 4.136 18 N -0.503 5.503 19 Si 0.744 3.256 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.200 1.200 23 C 0.000 4.000 24 C -0.073 4.073 25 C -0.133 4.133 26 O -0.093 6.093 27 H 0.111 0.889 28 H 0.105 0.895 29 H 0.119 0.881 30 H 0.108 0.892 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.090 0.910 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.082 0.918 37 H 0.103 0.897 38 H 0.106 0.894 39 H 0.105 0.895 40 H 0.079 0.921 41 H 0.105 0.895 42 H 0.094 0.906 43 H 0.051 0.949 44 H 0.109 0.891 45 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -5.703 -25.806 8.912 27.891 hybrid contribution 2.802 -0.080 0.076 2.804 sum -2.901 -25.886 8.988 27.555 Atomic orbital electron populations 1.20256 0.81400 1.05031 1.04793 1.26321 0.96522 0.78665 1.00411 1.70390 1.01771 1.30242 1.18315 1.21605 0.92815 0.92741 1.05161 1.20293 0.92070 0.96403 0.89818 1.58375 1.02656 1.48912 1.18253 1.21527 0.87664 0.98738 0.97639 1.21906 1.00813 0.99187 0.94771 1.22075 0.83499 0.97329 0.98739 1.47860 1.07763 1.06525 1.73048 1.20405 0.90602 0.81835 0.75687 1.90692 1.26433 1.73420 1.48408 1.23568 0.99017 1.03282 1.04179 1.85414 1.13324 0.90967 1.93844 1.22814 0.93923 0.94661 1.56920 0.91043 1.24989 0.97591 0.96281 0.94730 1.70012 1.27128 1.06680 1.46459 0.86235 0.82278 0.78129 0.78910 1.19933 1.20817 1.19961 1.21422 0.89063 0.94838 0.94663 1.21758 0.94738 0.95570 0.95273 1.24705 0.84746 0.96058 1.07806 1.84438 1.17031 1.37805 1.70010 0.88859 0.89484 0.88086 0.89228 0.92929 0.93398 0.91029 0.90270 0.90309 0.91816 0.89677 0.89378 0.89466 0.92147 0.89547 0.90630 0.94929 0.89069 0.76949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.31 10.51 36.00 0.38 0.07 16 2 C 0.19 1.80 8.34 -12.95 -0.11 1.70 16 3 N -0.48 -5.68 10.00 -7.36 -0.07 -5.75 16 4 C 0.00 -0.04 5.82 -82.81 -0.48 -0.52 16 5 C 0.14 1.39 5.50 -4.98 -0.03 1.36 16 6 N -0.56 -6.08 3.84 -240.94 -0.93 -7.01 16 7 C 0.07 0.72 5.32 -5.07 -0.03 0.69 16 8 C -0.13 -1.13 5.79 -26.99 -0.16 -1.29 16 9 C 0.11 1.20 6.03 -2.82 -0.02 1.19 16 10 N -0.62 -9.19 2.17 -172.22 -0.37 -9.56 16 11 C 0.53 10.39 7.65 -10.98 -0.08 10.30 16 12 O -0.52 -12.19 15.29 5.56 0.09 -12.11 16 13 C -0.15 -3.12 4.49 36.01 0.16 -2.95 16 14 S -0.06 -1.72 20.57 -107.50 -2.21 -3.93 16 15 C -0.53 -15.37 9.50 30.94 0.29 -15.07 16 16 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 17 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 18 N -0.87 -26.43 13.22 55.49 0.73 -25.69 16 19 Si 0.92 21.53 29.55 -169.99 -5.02 16.51 16 20 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 23 C 0.12 1.72 5.51 -3.98 -0.02 1.70 16 24 C 0.06 0.77 5.26 -5.74 -0.03 0.74 16 25 C -0.06 -0.53 12.08 29.35 0.35 -0.17 16 26 O -0.21 -1.96 10.78 5.35 0.06 -1.90 16 27 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.09 0.63 7.57 -51.93 -0.39 0.24 16 31 H 0.05 0.59 8.11 -51.93 -0.42 0.17 16 32 H 0.05 0.62 7.33 -51.93 -0.38 0.24 16 33 H 0.07 0.57 7.36 -51.93 -0.38 0.19 16 34 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.69 7.98 -51.93 -0.41 0.28 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.08 0.99 5.87 -51.93 -0.30 0.68 16 38 H 0.09 1.70 8.03 -51.92 -0.42 1.29 16 39 H 0.09 1.68 7.42 -51.91 -0.39 1.29 16 40 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 41 H 0.09 1.35 7.28 -51.93 -0.38 0.97 16 42 H 0.08 0.91 8.11 -51.93 -0.42 0.49 16 43 H 0.03 0.55 8.12 -51.93 -0.42 0.13 16 44 H 0.09 1.29 5.86 -51.93 -0.30 0.98 16 45 H 0.21 1.03 8.06 -52.48 -0.42 0.60 16 LS Contribution 377.97 15.07 5.70 5.70 Total: -1.00 -36.60 377.97 -8.60 -45.20 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -6.70 Total: -1.19 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: 0.14 Total: -0.25 kcal Atomic # 7 Polarization: -47.38 SS G_CDS: -0.64 Total: -48.01 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: 0.14 Total: -14.01 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: -1.72 SS G_CDS: -2.21 Total: -3.93 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -36.60 -8.60 -45.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194918835.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.857 kcal (2) G-P(sol) polarization free energy of solvation -36.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds