Wall clock time and date at job start Tue Mar 31 2020 22:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30261 * 125.61597 * 2 1 4 4 C 1.34480 * 108.69810 * 179.97438 * 3 2 1 5 5 C 1.50701 * 126.16251 * 179.97438 * 4 3 2 6 6 N 1.46896 * 109.47271 * 275.02687 * 5 4 3 7 7 C 1.46203 * 110.99965 * 197.08316 * 6 5 4 8 8 C 1.51271 * 109.10317 * 144.76950 * 7 6 5 9 9 C 1.54168 * 109.77405 * 92.30669 * 8 7 6 10 10 N 1.47618 * 111.09616 * 320.24181 * 9 8 7 11 11 C 1.34777 * 118.74495 * 138.20128 * 10 9 8 12 12 O 1.21278 * 119.99854 * 179.73911 * 11 10 9 13 13 C 1.50703 * 120.00161 * 359.73218 * 11 10 9 14 14 S 1.81002 * 109.47178 * 180.02562 * 13 11 10 15 15 C 1.76198 * 100.00092 * 180.02562 * 14 13 11 16 16 H 1.08004 * 120.00019 * 0.02562 * 15 14 13 17 17 C 1.38795 * 119.99810 * 179.97438 * 15 14 13 18 18 N 1.31626 * 120.00234 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99664 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47231 * 60.00264 * 19 17 15 21 21 H 1.48505 * 109.47271 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47260 * 299.99689 * 19 17 15 23 23 C 1.44879 * 122.50546 * 317.92025 * 10 9 8 24 24 C 1.41443 * 111.00268 * 66.04407 * 6 5 4 25 25 C 1.34323 * 107.66983 * 0.26374 * 4 3 2 26 26 O 1.33973 * 125.62315 * 179.97438 * 2 1 3 27 27 H 1.09002 * 109.46832 * 90.00579 * 1 2 3 28 28 H 1.08999 * 109.46976 * 209.99730 * 1 2 3 29 29 H 1.08993 * 109.47558 * 330.00127 * 1 2 3 30 30 H 1.09003 * 109.47072 * 155.02164 * 5 4 3 31 31 H 1.09003 * 109.47007 * 35.02602 * 5 4 3 32 32 H 1.08995 * 109.53063 * 264.65937 * 7 6 5 33 33 H 1.09003 * 109.53330 * 24.80810 * 7 6 5 34 34 H 1.08997 * 109.44452 * 212.45125 * 8 7 6 35 35 H 1.09001 * 109.44506 * 332.38887 * 8 7 6 36 36 H 1.09003 * 109.31613 * 199.77649 * 9 8 7 37 37 H 1.09001 * 109.12489 * 80.59061 * 9 8 7 38 38 H 1.09002 * 109.47152 * 60.00245 * 13 11 10 39 39 H 1.09001 * 109.46980 * 300.00345 * 13 11 10 40 40 H 0.97005 * 119.99806 * 179.97438 * 18 17 15 41 41 H 1.08997 * 109.43848 * 210.06919 * 23 10 9 42 42 H 1.09001 * 109.43846 * 329.98716 * 23 10 9 43 43 H 1.09000 * 109.38054 * 71.52677 * 24 6 5 44 44 H 1.08999 * 109.38230 * 311.84810 * 24 6 5 45 45 H 1.08006 * 126.44261 * 179.73756 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2655 1.0589 0.0000 4 6 3.5521 0.6676 0.0006 5 6 4.7570 1.5729 0.0002 6 7 5.0759 1.9631 -1.3796 7 6 6.4358 2.4916 -1.4736 8 6 7.0358 2.0815 -2.8002 9 6 6.7789 3.1802 -3.8508 10 7 5.4228 3.7455 -3.7078 11 6 5.2608 5.0785 -3.8225 12 8 4.1560 5.5667 -3.7137 13 6 6.4526 5.9625 -4.0857 14 16 5.9139 7.6876 -4.1859 15 6 7.4608 8.4740 -4.4911 16 1 8.3624 7.8835 -4.5611 17 6 7.5206 9.8524 -4.6427 18 7 6.4216 10.5720 -4.5590 19 14 9.1605 10.6860 -4.9670 20 1 9.7419 10.1608 -6.2286 21 1 8.9553 12.1518 -5.0886 22 1 10.0882 10.4084 -3.8411 23 6 4.2585 2.9213 -3.4548 24 6 4.0504 2.7676 -1.9288 25 6 3.5698 -0.6755 -0.0050 26 8 2.2873 -1.0890 0.0005 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3634 0.8899 0.5138 30 1 5.6069 1.0466 0.4348 31 1 4.5418 2.4643 0.5894 32 1 6.4095 3.5792 -1.4061 33 1 7.0398 2.0905 -0.6596 34 1 8.1095 1.9351 -2.6831 35 1 6.5769 1.1507 -3.1337 36 1 6.8853 2.7562 -4.8493 37 1 7.5127 3.9759 -3.7221 38 1 6.9196 5.6721 -5.0268 39 1 7.1722 5.8535 -3.2742 40 1 6.4635 11.5354 -4.6646 41 1 3.3790 3.3908 -3.8953 42 1 4.4063 1.9378 -3.9008 43 1 4.0720 3.7513 -1.4598 44 1 3.0839 2.3000 -1.7406 45 1 4.4470 -1.3056 -0.0101 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194918835.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:06 Heat of formation + Delta-G solvation = -20.496647 kcal Electronic energy + Delta-G solvation = -27151.990149 eV Core-core repulsion = 23296.944433 eV Total energy + Delta-G solvation = -3855.045716 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.27387 -41.42356 -39.33584 -36.77189 -35.50471 -34.59892 -33.66499 -33.27180 -31.62836 -29.82652 -28.33341 -27.65488 -27.33592 -25.87279 -23.58206 -22.56229 -22.02869 -21.45083 -20.39658 -19.43960 -18.26773 -18.03474 -17.78215 -17.40063 -16.96842 -16.89065 -16.50664 -16.32477 -16.05336 -15.64810 -15.13873 -15.04356 -14.78176 -14.52509 -14.48878 -13.95444 -13.87380 -13.80551 -13.58243 -13.30828 -13.19814 -13.00166 -12.87260 -12.74965 -12.71122 -12.53866 -12.36857 -12.14302 -11.87357 -11.78274 -11.69509 -11.47385 -11.13847 -10.87057 -10.27986 -9.73769 -9.66843 -9.29533 -8.70036 -8.35342 -6.14715 0.55006 1.24439 1.43459 1.45002 1.53737 1.55130 1.61047 1.91146 2.11203 2.26605 2.91109 2.98539 3.18054 3.23760 3.66339 3.73761 3.82455 3.95896 4.06200 4.11207 4.13394 4.25632 4.32143 4.36705 4.42923 4.50808 4.52357 4.63513 4.63971 4.67514 4.71530 4.78613 4.87466 4.89406 4.97185 4.98241 5.08964 5.13078 5.28467 5.38675 5.39895 5.66046 6.05488 6.15910 6.18721 6.35463 6.82968 7.05201 7.13538 8.73808 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.022786 B = 0.002290 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.546868 B =12223.752916 C =12798.190397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.182 3.818 3 N -0.520 5.520 4 C -0.034 4.034 5 C 0.144 3.856 6 N -0.547 5.547 7 C 0.067 3.933 8 C -0.116 4.116 9 C 0.094 3.906 10 N -0.600 5.600 11 C 0.523 3.477 12 O -0.568 6.568 13 C -0.120 4.120 14 S -0.158 6.158 15 C -0.545 4.545 16 H 0.084 0.916 17 C 0.012 3.988 18 N -0.912 5.912 19 Si 1.000 3.000 20 H -0.260 1.260 21 H -0.279 1.279 22 H -0.261 1.261 23 C 0.127 3.873 24 C 0.074 3.926 25 C -0.046 4.046 26 O -0.211 6.211 27 H 0.103 0.897 28 H 0.110 0.890 29 H 0.100 0.900 30 H 0.125 0.875 31 H 0.027 0.973 32 H 0.014 0.986 33 H 0.102 0.898 34 H 0.111 0.889 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.108 0.892 39 H 0.105 0.895 40 H 0.271 0.729 41 H 0.062 0.938 42 H 0.106 0.894 43 H -0.012 1.012 44 H 0.085 0.915 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.804 -30.135 8.980 31.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.025 4.025 3 N -0.252 5.252 4 C -0.153 4.153 5 C 0.017 3.983 6 N -0.272 5.272 7 C -0.060 4.060 8 C -0.154 4.154 9 C -0.027 4.027 10 N -0.333 5.333 11 C 0.311 3.689 12 O -0.446 6.446 13 C -0.271 4.271 14 S 0.070 5.930 15 C -0.692 4.692 16 H 0.102 0.898 17 C -0.193 4.193 18 N -0.549 5.549 19 Si 0.822 3.178 20 H -0.185 1.185 21 H -0.204 1.204 22 H -0.185 1.185 23 C 0.003 3.997 24 C -0.056 4.056 25 C -0.117 4.117 26 O -0.098 6.098 27 H 0.122 0.878 28 H 0.128 0.872 29 H 0.119 0.881 30 H 0.143 0.857 31 H 0.045 0.955 32 H 0.032 0.968 33 H 0.120 0.880 34 H 0.130 0.870 35 H 0.107 0.893 36 H 0.104 0.896 37 H 0.101 0.899 38 H 0.126 0.874 39 H 0.123 0.877 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.124 0.876 43 H 0.006 0.994 44 H 0.103 0.897 45 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -2.744 -29.081 8.864 30.525 hybrid contribution 1.848 0.762 0.146 2.005 sum -0.896 -28.319 9.010 29.731 Atomic orbital electron populations 1.20453 0.79052 1.06145 1.05778 1.27037 0.97798 0.78258 0.99434 1.70368 1.03071 1.31824 1.19908 1.21778 0.92503 0.93857 1.07168 1.20379 0.93406 0.95776 0.88746 1.58482 1.02368 1.47386 1.18948 1.21681 0.87544 0.96884 0.99887 1.21885 1.02761 0.98096 0.92641 1.22482 0.80829 0.98226 1.01148 1.47882 1.09863 1.04791 1.70783 1.20305 0.89406 0.83420 0.75764 1.90674 1.27991 1.74763 1.51199 1.23366 0.99604 0.98259 1.05839 1.85648 1.15780 0.97379 1.94229 1.23147 0.93837 0.95330 1.56912 0.89790 1.26174 1.02054 0.97011 0.94053 1.70191 1.30015 1.07047 1.47633 0.84980 0.76684 0.76703 0.79476 1.18474 1.20443 1.18533 1.21471 0.87880 0.95439 0.94918 1.21462 0.95750 0.93584 0.94815 1.25364 0.85274 0.95700 1.05330 1.84464 1.17548 1.37821 1.69974 0.87820 0.87180 0.88115 0.85692 0.95510 0.96765 0.87976 0.87046 0.89265 0.89583 0.89854 0.87388 0.87667 0.91999 0.92004 0.87610 0.99408 0.89701 0.73205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.57 10.51 71.23 0.75 0.18 16 2 C 0.18 3.39 8.34 88.34 0.74 4.13 16 3 N -0.52 -12.60 10.00 -291.97 -2.92 -15.52 16 4 C -0.03 -0.69 5.82 41.26 0.24 -0.45 16 5 C 0.14 2.67 5.50 85.56 0.47 3.14 16 6 N -0.55 -11.22 3.84 -916.20 -3.52 -14.74 16 7 C 0.07 1.19 5.32 85.87 0.46 1.64 16 8 C -0.12 -1.56 5.79 30.42 0.18 -1.39 16 9 C 0.09 1.86 6.03 86.56 0.52 2.38 16 10 N -0.60 -17.58 2.17 -817.16 -1.78 -19.35 16 11 C 0.52 21.21 7.65 87.66 0.67 21.88 16 12 O -0.57 -28.57 15.29 -3.02 -0.05 -28.61 16 13 C -0.12 -5.00 4.49 71.24 0.32 -4.68 16 14 S -0.16 -9.07 20.57 -56.49 -1.16 -10.23 16 15 C -0.54 -31.57 9.50 67.95 0.65 -30.92 16 16 H 0.08 4.48 7.80 -2.91 -0.02 4.45 16 17 C 0.01 0.67 5.49 84.86 0.47 1.14 16 18 N -0.91 -57.06 13.22 21.65 0.29 -56.78 16 19 Si 1.00 43.91 29.55 68.60 2.03 45.93 16 20 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 21 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 22 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 23 C 0.13 3.51 5.51 87.29 0.48 3.99 16 24 C 0.07 2.09 5.26 87.90 0.46 2.56 16 25 C -0.05 -0.67 12.08 66.92 0.81 0.14 16 26 O -0.21 -3.66 10.78 -3.77 -0.04 -3.70 16 27 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.13 1.37 7.57 -2.39 -0.02 1.35 16 31 H 0.03 0.63 8.11 -2.39 -0.02 0.61 16 32 H 0.01 0.35 7.33 -2.39 -0.02 0.33 16 33 H 0.10 1.22 7.36 -2.39 -0.02 1.21 16 34 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.09 1.12 7.98 -2.39 -0.02 1.10 16 36 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.08 1.70 5.87 -2.39 -0.01 1.69 16 38 H 0.11 4.07 8.03 -2.39 -0.02 4.05 16 39 H 0.11 4.00 7.42 -2.39 -0.02 3.98 16 40 H 0.27 15.75 8.31 -92.70 -0.77 14.97 16 41 H 0.06 2.04 7.28 -2.39 -0.02 2.02 16 42 H 0.11 2.33 8.11 -2.39 -0.02 2.31 16 43 H -0.01 -0.45 8.12 -2.39 -0.02 -0.47 16 44 H 0.08 2.52 5.86 -2.39 -0.01 2.50 16 45 H 0.25 1.33 8.06 -2.91 -0.02 1.31 16 Total: -1.00 -85.74 377.97 1.05 -84.70 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: 0.99 Total: 14.57 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: 7.21 Total: 3.73 kcal Atomic # 7 Polarization: -98.46 SS G_CDS: -7.93 Total: -106.39 kcal Atomic # 8 Polarization: -32.23 SS G_CDS: -0.09 Total: -32.31 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.93 kcal Atomic # 16 Polarization: -9.07 SS G_CDS: -1.16 Total: -10.23 kcal Total: -85.74 1.05 -84.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194918835.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.199 kcal (2) G-P(sol) polarization free energy of solvation -85.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds