Wall clock time and date at job start Tue Mar 31 2020 22:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30250 * 125.62104 * 2 1 4 4 C 1.34485 * 108.70025 * 180.02562 * 3 2 1 5 5 C 1.34325 * 107.66767 * 0.02562 * 4 3 2 6 6 C 1.50702 * 126.44374 * 179.97438 * 5 4 3 7 7 N 1.46908 * 109.47101 * 90.02157 * 6 5 4 8 8 C 1.46897 * 111.00083 * 180.02562 * 7 6 5 9 9 C 1.53039 * 109.45847 * 275.06843 * 8 7 6 10 10 C 1.53195 * 109.31070 * 178.61295 * 9 8 7 11 11 N 1.46924 * 108.77577 * 54.63663 * 10 9 8 12 12 C 1.34774 * 120.63189 * 126.36495 * 11 10 9 13 13 O 1.21284 * 120.00116 * 180.02562 * 12 11 10 14 14 C 1.50702 * 119.99946 * 0.02635 * 12 11 10 15 15 S 1.81005 * 109.46964 * 179.97438 * 14 12 11 16 16 C 1.76199 * 99.99833 * 179.97438 * 15 14 12 17 17 H 1.08004 * 120.00064 * 359.97438 * 16 15 14 18 18 C 1.38800 * 119.99914 * 179.97438 * 16 15 14 19 19 N 1.31624 * 119.99967 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 120.00050 * 0.02562 * 18 16 15 21 21 H 1.48495 * 109.47613 * 89.99591 * 20 18 16 22 22 H 1.48494 * 109.47042 * 210.00163 * 20 18 16 23 23 H 1.48502 * 109.46857 * 329.99607 * 20 18 16 24 24 C 1.46927 * 118.73533 * 306.39209 * 11 10 9 25 25 C 1.53039 * 109.45939 * 154.99916 * 8 7 6 26 26 O 1.33974 * 125.61558 * 180.02562 * 2 1 3 27 27 H 1.08994 * 109.47230 * 269.97934 * 1 2 3 28 28 H 1.09002 * 109.46890 * 29.97881 * 1 2 3 29 29 H 1.09000 * 109.47487 * 149.97049 * 1 2 3 30 30 H 1.08000 * 126.16216 * 180.02562 * 4 3 2 31 31 H 1.08999 * 109.46996 * 210.02003 * 6 5 4 32 32 H 1.09001 * 109.46826 * 330.02641 * 6 5 4 33 33 H 1.00901 * 110.99506 * 56.04372 * 7 6 5 34 34 H 1.09001 * 109.45905 * 35.02769 * 8 7 6 35 35 H 1.09002 * 109.49854 * 298.56695 * 9 8 7 36 36 H 1.09003 * 109.49820 * 58.66219 * 9 8 7 37 37 H 1.09002 * 109.58741 * 294.84589 * 10 9 8 38 38 H 1.09004 * 109.70263 * 174.48963 * 10 9 8 39 39 H 1.09000 * 109.46691 * 299.99692 * 14 12 11 40 40 H 1.09001 * 109.47064 * 59.99895 * 14 12 11 41 41 H 0.96999 * 120.00111 * 179.97438 * 19 18 16 42 42 H 1.08996 * 109.58405 * 293.81507 * 24 11 10 43 43 H 1.09007 * 109.70152 * 173.46723 * 24 11 10 44 44 H 1.08994 * 109.49518 * 301.33627 * 25 8 7 45 45 H 1.08999 * 109.49783 * 61.40451 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5522 0.6674 -0.0006 5 6 3.5697 -0.6758 -0.0015 6 6 4.7936 -1.5551 -0.0029 7 7 5.1919 -1.8422 1.3817 8 6 6.3848 -2.6986 1.4195 9 6 5.9634 -4.1653 1.3042 10 6 7.2119 -5.0530 1.3091 11 7 8.0059 -4.7457 2.5065 12 6 8.3761 -5.7252 3.3550 13 8 9.0312 -5.4585 4.3403 14 6 7.9761 -7.1518 3.0795 15 16 8.6194 -8.2225 4.3895 16 6 8.0210 -9.7827 3.8309 17 1 7.4437 -9.8451 2.9203 18 6 8.2915 -10.9317 4.5612 19 7 7.8440 -12.0971 4.1442 20 14 9.2894 -10.8237 6.1367 21 1 8.3762 -10.6063 7.2872 22 1 10.0416 -12.0887 6.3338 23 1 10.2439 -9.6900 6.0412 24 6 8.3882 -3.3502 2.7615 25 6 7.1266 -2.4815 2.7404 26 8 2.2872 -1.0891 -0.0005 27 1 -0.3633 -0.0004 1.0276 28 1 -0.3633 0.8902 -0.5135 29 1 -0.3634 -0.8897 -0.5143 30 1 4.4157 1.3161 -0.0003 31 1 4.5691 -2.4894 -0.5176 32 1 5.6077 -1.0438 -0.5166 33 1 4.4312 -2.2581 1.8978 34 1 7.0417 -2.4432 0.5879 35 1 5.3265 -4.4283 2.1488 36 1 5.4148 -4.3141 0.3741 37 1 7.8050 -4.8545 0.4164 38 1 6.9167 -6.1022 1.3258 39 1 6.8890 -7.2252 3.0508 40 1 8.3870 -7.4655 2.1199 41 1 8.0334 -12.9001 4.6544 42 1 9.0773 -3.0128 1.9874 43 1 8.8686 -3.2732 3.7370 44 1 7.4060 -1.4320 2.8324 45 1 6.4787 -2.7598 3.5715 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199394484.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:40 Heat of formation + Delta-G solvation = -12.620492 kcal Electronic energy + Delta-G solvation = -26112.536451 eV Core-core repulsion = 22257.832270 eV Total energy + Delta-G solvation = -3854.704180 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.70097 -40.16669 -38.15839 -35.75247 -35.12847 -33.09024 -32.46290 -31.93686 -31.14388 -29.33005 -28.31421 -25.67301 -25.34108 -23.73703 -23.37912 -22.66659 -21.41858 -21.12372 -19.29485 -17.80508 -17.37001 -17.23070 -16.89214 -16.03074 -15.73730 -15.52118 -15.31185 -15.14091 -14.97415 -14.40955 -14.20849 -14.13456 -13.81326 -13.59449 -13.36400 -13.24326 -13.20851 -13.01937 -12.87723 -12.74247 -12.48468 -12.11758 -11.85004 -11.64202 -11.52919 -11.29414 -11.19688 -11.02777 -10.94640 -10.83785 -10.60477 -9.87755 -9.51734 -9.19700 -9.02637 -8.89371 -8.65047 -8.51355 -6.94584 -6.31251 -4.03177 1.00248 2.19814 2.30990 2.68008 2.89510 3.16526 3.31647 3.48966 3.56099 3.60470 3.75842 4.23671 4.30851 4.36260 4.42574 4.55380 4.62487 4.69599 4.70910 4.87491 4.88509 4.89543 5.03725 5.05933 5.07539 5.08153 5.12410 5.24545 5.33951 5.37499 5.46785 5.50825 5.60326 5.64613 5.70541 5.76987 5.82639 5.94737 5.94841 5.97112 6.44305 6.52898 6.78598 7.34576 7.41720 7.91668 8.38552 8.40503 9.14982 10.77905 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020528 B = 0.001910 C = 0.001805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.677251 B =14659.919313 C =15506.640543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.190 3.810 3 N -0.487 5.487 4 C -0.017 4.017 5 C -0.050 4.050 6 C 0.146 3.854 7 N -0.681 5.681 8 C 0.090 3.910 9 C -0.167 4.167 10 C 0.112 3.888 11 N -0.619 5.619 12 C 0.534 3.466 13 O -0.518 6.518 14 C -0.122 4.122 15 S -0.142 6.142 16 C -0.521 4.521 17 H 0.088 0.912 18 C 0.096 3.904 19 N -0.880 5.880 20 Si 0.857 3.143 21 H -0.267 1.267 22 H -0.274 1.274 23 H -0.235 1.235 24 C 0.113 3.887 25 C -0.120 4.120 26 O -0.203 6.203 27 H 0.093 0.907 28 H 0.101 0.899 29 H 0.088 0.912 30 H 0.184 0.816 31 H 0.052 0.948 32 H 0.107 0.893 33 H 0.347 0.653 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.271 0.729 42 H 0.065 0.935 43 H 0.096 0.904 44 H 0.082 0.918 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.479 24.861 -12.295 29.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.017 4.017 3 N -0.217 5.217 4 C -0.157 4.157 5 C -0.103 4.103 6 C 0.017 3.983 7 N -0.312 5.312 8 C -0.020 4.020 9 C -0.207 4.207 10 C -0.012 4.012 11 N -0.355 5.355 12 C 0.322 3.678 13 O -0.393 6.393 14 C -0.272 4.272 15 S 0.084 5.916 16 C -0.669 4.669 17 H 0.106 0.894 18 C -0.113 4.113 19 N -0.516 5.516 20 Si 0.682 3.318 21 H -0.192 1.192 22 H -0.199 1.199 23 H -0.159 1.159 24 C -0.010 4.010 25 C -0.159 4.159 26 O -0.090 6.090 27 H 0.112 0.888 28 H 0.119 0.881 29 H 0.107 0.893 30 H 0.201 0.799 31 H 0.070 0.930 32 H 0.125 0.875 33 H 0.166 0.834 34 H 0.102 0.898 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.110 0.890 39 H 0.113 0.887 40 H 0.114 0.886 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.114 0.886 44 H 0.101 0.899 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.415 26.204 -10.737 29.842 hybrid contribution -0.627 -2.092 -0.864 2.348 sum -10.042 24.112 -11.600 28.580 Atomic orbital electron populations 1.20276 0.81294 1.05143 1.04835 1.26333 0.96498 0.78657 1.00184 1.70479 1.02222 1.30298 1.18704 1.23066 0.94944 0.92958 1.04693 1.23265 0.83244 0.95562 1.08257 1.20318 0.89840 0.96667 0.91451 1.60682 1.08690 1.50039 1.11742 1.21612 0.91586 0.89555 0.99207 1.22685 0.98624 0.96429 1.02932 1.21635 0.91405 1.00493 0.87668 1.48089 1.55100 1.07235 1.25116 1.20297 0.78842 0.86626 0.82073 1.90691 1.38148 1.83148 1.27275 1.23312 1.04744 0.94022 1.05146 1.84810 1.72080 1.02527 1.32183 1.22303 1.40059 0.90528 1.14014 0.89433 1.24713 0.94751 0.94195 0.97651 1.69933 1.44152 0.98292 1.39271 0.86732 0.81911 0.79620 0.83583 1.19203 1.19919 1.15914 1.21542 0.96047 0.80097 1.03300 1.21888 0.96656 1.00430 0.96888 1.84387 1.16763 1.37915 1.69946 0.88805 0.88073 0.89312 0.79876 0.92971 0.87504 0.83416 0.89843 0.90801 0.90819 0.91257 0.88990 0.88657 0.88551 0.91927 0.91711 0.88578 0.89942 0.91298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.24 10.51 36.01 0.38 0.13 16 2 C 0.19 1.64 8.34 -12.95 -0.11 1.53 16 3 N -0.49 -5.04 11.29 -11.10 -0.13 -5.16 16 4 C -0.02 -0.15 11.80 -17.77 -0.21 -0.36 16 5 C -0.05 -0.42 6.90 -35.69 -0.25 -0.67 16 6 C 0.15 0.90 6.03 -4.97 -0.03 0.87 16 7 N -0.68 -4.79 6.24 -107.94 -0.67 -5.47 16 8 C 0.09 0.63 2.43 -67.67 -0.16 0.47 16 9 C -0.17 -1.28 5.33 -26.61 -0.14 -1.42 16 10 C 0.11 1.07 6.34 -3.71 -0.02 1.05 16 11 N -0.62 -7.92 2.97 -172.76 -0.51 -8.44 16 12 C 0.53 9.48 7.72 -10.99 -0.08 9.39 16 13 O -0.52 -11.12 15.28 5.55 0.08 -11.04 16 14 C -0.12 -2.34 4.50 36.01 0.16 -2.17 16 15 S -0.14 -3.60 18.55 -107.50 -1.99 -5.59 16 16 C -0.52 -14.91 10.04 30.94 0.31 -14.60 16 17 H 0.09 2.60 8.03 -52.48 -0.42 2.18 16 18 C 0.10 2.78 5.50 -17.43 -0.10 2.69 16 19 N -0.88 -26.38 13.97 55.49 0.78 -25.61 16 20 Si 0.86 21.72 27.74 -169.99 -4.72 17.00 16 21 H -0.27 -6.70 7.11 56.52 0.40 -6.29 16 22 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.24 -5.96 6.74 56.52 0.38 -5.58 16 24 C 0.11 1.21 6.43 -3.71 -0.02 1.19 16 25 C -0.12 -1.03 5.69 -26.61 -0.15 -1.18 16 26 O -0.20 -1.90 10.78 5.34 0.06 -1.84 16 27 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.18 1.24 8.06 -52.49 -0.42 0.81 16 31 H 0.05 0.30 7.41 -51.93 -0.38 -0.08 16 32 H 0.11 0.50 8.05 -51.93 -0.42 0.08 16 33 H 0.35 2.66 8.47 -39.29 -0.33 2.33 16 34 H 0.08 0.52 7.80 -51.93 -0.40 0.11 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.47 7.42 -51.93 -0.39 0.08 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.09 0.94 5.93 -51.93 -0.31 0.63 16 39 H 0.10 1.71 7.69 -51.92 -0.40 1.31 16 40 H 0.10 1.72 7.94 -51.91 -0.41 1.31 16 41 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.10 1.23 7.01 -51.92 -0.36 0.86 16 44 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 382.60 15.07 5.77 5.77 Total: -1.00 -35.61 382.60 -8.56 -44.16 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -6.79 Total: -0.71 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: -0.43 Total: -3.08 kcal Atomic # 7 Polarization: -44.14 SS G_CDS: -0.54 Total: -44.67 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: 0.14 Total: -12.88 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.72 Total: 17.00 kcal Atomic # 16 Polarization: -3.60 SS G_CDS: -1.99 Total: -5.59 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.61 -8.56 -44.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199394484.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.544 kcal (2) G-P(sol) polarization free energy of solvation -35.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds