Wall clock time and date at job start Tue Mar 31 2020 22:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30250 * 125.62104 * 2 1 4 4 C 1.34485 * 108.70025 * 180.02562 * 3 2 1 5 5 C 1.34325 * 107.66767 * 0.02562 * 4 3 2 6 6 C 1.50702 * 126.44374 * 179.97438 * 5 4 3 7 7 N 1.46908 * 109.47101 * 90.02157 * 6 5 4 8 8 C 1.46897 * 111.00083 * 180.02562 * 7 6 5 9 9 C 1.53039 * 109.45847 * 275.06843 * 8 7 6 10 10 C 1.53195 * 109.31070 * 178.61295 * 9 8 7 11 11 N 1.46924 * 108.77577 * 54.63663 * 10 9 8 12 12 C 1.34774 * 120.63189 * 126.36495 * 11 10 9 13 13 O 1.21284 * 120.00116 * 180.02562 * 12 11 10 14 14 C 1.50702 * 119.99946 * 0.02635 * 12 11 10 15 15 S 1.81005 * 109.46964 * 179.97438 * 14 12 11 16 16 C 1.76199 * 99.99833 * 179.97438 * 15 14 12 17 17 H 1.08004 * 120.00064 * 359.97438 * 16 15 14 18 18 C 1.38800 * 119.99914 * 179.97438 * 16 15 14 19 19 N 1.31624 * 119.99967 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 120.00050 * 0.02562 * 18 16 15 21 21 H 1.48495 * 109.47613 * 89.99591 * 20 18 16 22 22 H 1.48494 * 109.47042 * 210.00163 * 20 18 16 23 23 H 1.48502 * 109.46857 * 329.99607 * 20 18 16 24 24 C 1.46927 * 118.73533 * 306.39209 * 11 10 9 25 25 C 1.53039 * 109.45939 * 154.99916 * 8 7 6 26 26 O 1.33974 * 125.61558 * 180.02562 * 2 1 3 27 27 H 1.08994 * 109.47230 * 269.97934 * 1 2 3 28 28 H 1.09002 * 109.46890 * 29.97881 * 1 2 3 29 29 H 1.09000 * 109.47487 * 149.97049 * 1 2 3 30 30 H 1.08000 * 126.16216 * 180.02562 * 4 3 2 31 31 H 1.08999 * 109.46996 * 210.02003 * 6 5 4 32 32 H 1.09001 * 109.46826 * 330.02641 * 6 5 4 33 33 H 1.00901 * 110.99506 * 56.04372 * 7 6 5 34 34 H 1.09001 * 109.45905 * 35.02769 * 8 7 6 35 35 H 1.09002 * 109.49854 * 298.56695 * 9 8 7 36 36 H 1.09003 * 109.49820 * 58.66219 * 9 8 7 37 37 H 1.09002 * 109.58741 * 294.84589 * 10 9 8 38 38 H 1.09004 * 109.70263 * 174.48963 * 10 9 8 39 39 H 1.09000 * 109.46691 * 299.99692 * 14 12 11 40 40 H 1.09001 * 109.47064 * 59.99895 * 14 12 11 41 41 H 0.96999 * 120.00111 * 179.97438 * 19 18 16 42 42 H 1.08996 * 109.58405 * 293.81507 * 24 11 10 43 43 H 1.09007 * 109.70152 * 173.46723 * 24 11 10 44 44 H 1.08994 * 109.49518 * 301.33627 * 25 8 7 45 45 H 1.08999 * 109.49783 * 61.40451 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5522 0.6674 -0.0006 5 6 3.5697 -0.6758 -0.0015 6 6 4.7936 -1.5551 -0.0029 7 7 5.1919 -1.8422 1.3817 8 6 6.3848 -2.6986 1.4195 9 6 5.9634 -4.1653 1.3042 10 6 7.2119 -5.0530 1.3091 11 7 8.0059 -4.7457 2.5065 12 6 8.3761 -5.7252 3.3550 13 8 9.0312 -5.4585 4.3403 14 6 7.9761 -7.1518 3.0795 15 16 8.6194 -8.2225 4.3895 16 6 8.0210 -9.7827 3.8309 17 1 7.4437 -9.8451 2.9203 18 6 8.2915 -10.9317 4.5612 19 7 7.8440 -12.0971 4.1442 20 14 9.2894 -10.8237 6.1367 21 1 8.3762 -10.6063 7.2872 22 1 10.0416 -12.0887 6.3338 23 1 10.2439 -9.6900 6.0412 24 6 8.3882 -3.3502 2.7615 25 6 7.1266 -2.4815 2.7404 26 8 2.2872 -1.0891 -0.0005 27 1 -0.3633 -0.0004 1.0276 28 1 -0.3633 0.8902 -0.5135 29 1 -0.3634 -0.8897 -0.5143 30 1 4.4157 1.3161 -0.0003 31 1 4.5691 -2.4894 -0.5176 32 1 5.6077 -1.0438 -0.5166 33 1 4.4312 -2.2581 1.8978 34 1 7.0417 -2.4432 0.5879 35 1 5.3265 -4.4283 2.1488 36 1 5.4148 -4.3141 0.3741 37 1 7.8050 -4.8545 0.4164 38 1 6.9167 -6.1022 1.3258 39 1 6.8890 -7.2252 3.0508 40 1 8.3870 -7.4655 2.1199 41 1 8.0334 -12.9001 4.6544 42 1 9.0773 -3.0128 1.9874 43 1 8.8686 -3.2732 3.7370 44 1 7.4060 -1.4320 2.8324 45 1 6.4787 -2.7598 3.5715 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001199394484.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:39 Heat of formation + Delta-G solvation = -39.898205 kcal Electronic energy + Delta-G solvation = -26113.719301 eV Core-core repulsion = 22257.832270 eV Total energy + Delta-G solvation = -3855.887031 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.31360 -41.24829 -39.11546 -36.62500 -35.77463 -34.68645 -33.81933 -32.75012 -31.81445 -30.54653 -29.01663 -27.86778 -26.03701 -24.48822 -24.17469 -23.25919 -22.05501 -21.92432 -20.47873 -19.59578 -18.33305 -17.90351 -17.82897 -17.19115 -16.90378 -16.81980 -16.44477 -16.03485 -15.77144 -15.68905 -15.05961 -15.00018 -14.91719 -14.81926 -14.40309 -14.09971 -13.91355 -13.80140 -13.66821 -13.45314 -13.33367 -13.30126 -13.14827 -13.02944 -12.73935 -12.58008 -12.30161 -12.22597 -11.91225 -11.87630 -11.61408 -11.50649 -11.18490 -10.93571 -10.53665 -9.84767 -9.66732 -9.42368 -9.01822 -8.52833 -6.23903 0.40480 0.96596 1.30262 1.45177 1.50897 1.53532 1.64850 1.70795 2.07067 2.23916 2.66954 2.85404 3.07518 3.22444 3.50870 3.67663 3.79305 3.90422 4.00731 4.09633 4.13317 4.16840 4.23136 4.32285 4.37637 4.42865 4.47773 4.62050 4.63727 4.67210 4.71375 4.74264 4.80512 4.92082 4.97450 5.04692 5.06184 5.11718 5.26207 5.39310 5.56675 5.69438 5.91288 6.09738 6.19700 6.25275 6.73270 6.92421 7.08100 8.59395 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020528 B = 0.001910 C = 0.001805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.677251 B =14659.919313 C =15506.640543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.184 3.816 3 N -0.521 5.521 4 C -0.034 4.034 5 C -0.055 4.055 6 C 0.150 3.850 7 N -0.684 5.684 8 C 0.098 3.902 9 C -0.159 4.159 10 C 0.104 3.896 11 N -0.605 5.605 12 C 0.533 3.467 13 O -0.565 6.565 14 C -0.106 4.106 15 S -0.178 6.178 16 C -0.528 4.528 17 H 0.063 0.937 18 C 0.046 3.954 19 N -0.915 5.915 20 Si 0.913 3.087 21 H -0.263 1.263 22 H -0.258 1.258 23 H -0.238 1.238 24 C 0.111 3.889 25 C -0.111 4.111 26 O -0.215 6.215 27 H 0.106 0.894 28 H 0.110 0.890 29 H 0.104 0.896 30 H 0.199 0.801 31 H 0.061 0.939 32 H 0.127 0.873 33 H 0.342 0.658 34 H 0.105 0.895 35 H 0.057 0.943 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.084 0.916 39 H 0.108 0.892 40 H 0.112 0.888 41 H 0.277 0.723 42 H 0.092 0.908 43 H 0.071 0.929 44 H 0.095 0.905 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.633 26.424 -13.595 31.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.023 4.023 3 N -0.251 5.251 4 C -0.173 4.173 5 C -0.108 4.108 6 C 0.022 3.978 7 N -0.314 5.314 8 C -0.011 4.011 9 C -0.199 4.199 10 C -0.019 4.019 11 N -0.339 5.339 12 C 0.320 3.680 13 O -0.443 6.443 14 C -0.256 4.256 15 S 0.048 5.952 16 C -0.675 4.675 17 H 0.081 0.919 18 C -0.159 4.159 19 N -0.553 5.553 20 Si 0.735 3.265 21 H -0.188 1.188 22 H -0.182 1.182 23 H -0.162 1.162 24 C -0.011 4.011 25 C -0.150 4.150 26 O -0.103 6.103 27 H 0.124 0.876 28 H 0.128 0.872 29 H 0.123 0.877 30 H 0.215 0.785 31 H 0.079 0.921 32 H 0.145 0.855 33 H 0.161 0.839 34 H 0.123 0.877 35 H 0.076 0.924 36 H 0.113 0.887 37 H 0.116 0.884 38 H 0.103 0.897 39 H 0.126 0.874 40 H 0.130 0.870 41 H 0.086 0.914 42 H 0.110 0.890 43 H 0.089 0.911 44 H 0.113 0.887 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -9.593 27.797 -12.088 31.794 hybrid contribution -0.686 -2.441 -0.603 2.606 sum -10.279 25.356 -12.691 30.160 Atomic orbital electron populations 1.20511 0.78687 1.06391 1.05951 1.27189 0.97911 0.78207 0.98977 1.70478 1.03153 1.31371 1.20145 1.23413 0.95114 0.93700 1.05030 1.23655 0.83536 0.95758 1.07810 1.20444 0.89495 0.96900 0.90971 1.60641 1.08543 1.49862 1.12375 1.21535 0.91764 0.89028 0.98783 1.22637 0.97480 0.96386 1.03411 1.21953 0.92266 1.00683 0.87006 1.48115 1.53847 1.07160 1.24782 1.20011 0.78909 0.86728 0.82346 1.90674 1.40634 1.83643 1.29395 1.23278 1.05240 0.93999 1.03122 1.84747 1.72786 1.02135 1.35504 1.22436 1.39532 0.92417 1.13153 0.91888 1.25548 0.95791 0.93971 1.00631 1.70007 1.45465 0.99067 1.40789 0.85879 0.80645 0.80029 0.79901 1.18773 1.18246 1.16152 1.21723 0.97515 0.78905 1.02980 1.21796 0.95407 1.00479 0.97305 1.84396 1.17358 1.38394 1.70172 0.87613 0.87155 0.87687 0.78451 0.92102 0.85533 0.83947 0.87686 0.92398 0.88660 0.88357 0.89728 0.87375 0.86989 0.91351 0.88983 0.91053 0.88669 0.93306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.40 10.51 71.24 0.75 0.34 16 2 C 0.18 3.00 8.34 88.34 0.74 3.74 16 3 N -0.52 -10.45 11.29 -303.82 -3.43 -13.88 16 4 C -0.03 -0.57 11.80 83.39 0.98 0.41 16 5 C -0.05 -0.83 6.90 24.79 0.17 -0.66 16 6 C 0.15 1.40 6.03 85.56 0.52 1.92 16 7 N -0.68 -7.77 6.24 -495.42 -3.09 -10.86 16 8 C 0.10 1.05 2.43 44.94 0.11 1.16 16 9 C -0.16 -1.96 5.33 30.67 0.16 -1.80 16 10 C 0.10 1.67 6.34 86.36 0.55 2.21 16 11 N -0.60 -14.36 2.97 -818.89 -2.43 -16.80 16 12 C 0.53 18.56 7.72 87.66 0.68 19.24 16 13 O -0.56 -24.42 15.28 -3.04 -0.05 -24.47 16 14 C -0.11 -3.99 4.50 71.24 0.32 -3.67 16 15 S -0.18 -9.05 18.55 -56.49 -1.05 -10.10 16 16 C -0.53 -30.63 10.04 67.95 0.68 -29.94 16 17 H 0.06 3.84 8.03 -2.91 -0.02 3.81 16 18 C 0.05 2.70 5.50 84.86 0.47 3.17 16 19 N -0.92 -55.46 13.97 21.65 0.30 -55.16 16 20 Si 0.91 45.03 27.74 68.60 1.90 46.93 16 21 H -0.26 -12.68 7.11 99.48 0.71 -11.97 16 22 H -0.26 -11.90 7.11 99.48 0.71 -11.20 16 23 H -0.24 -11.73 6.74 99.48 0.67 -11.06 16 24 C 0.11 2.15 6.43 86.36 0.56 2.71 16 25 C -0.11 -1.66 5.69 30.67 0.17 -1.49 16 26 O -0.22 -3.77 10.78 -3.79 -0.04 -3.81 16 27 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.20 2.41 8.06 -2.91 -0.02 2.38 16 31 H 0.06 0.49 7.41 -2.39 -0.02 0.47 16 32 H 0.13 0.69 8.05 -2.39 -0.02 0.68 16 33 H 0.34 4.58 8.47 -89.69 -0.76 3.82 16 34 H 0.11 0.77 7.80 -2.39 -0.02 0.75 16 35 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.10 0.83 7.42 -2.39 -0.02 0.82 16 37 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.08 1.52 5.93 -2.38 -0.01 1.51 16 39 H 0.11 3.80 7.69 -2.39 -0.02 3.78 16 40 H 0.11 3.87 7.94 -2.39 -0.02 3.86 16 41 H 0.28 15.52 8.31 -92.71 -0.77 14.75 16 42 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.07 1.79 7.01 -2.38 -0.02 1.77 16 44 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 45 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -78.99 382.60 -0.82 -79.81 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: 0.21 Total: 10.98 kcal Atomic # 6 Polarization: -9.50 SS G_CDS: 6.85 Total: -2.65 kcal Atomic # 7 Polarization: -88.04 SS G_CDS: -8.65 Total: -96.69 kcal Atomic # 8 Polarization: -28.19 SS G_CDS: -0.09 Total: -28.28 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 1.90 Total: 46.93 kcal Atomic # 16 Polarization: -9.05 SS G_CDS: -1.05 Total: -10.10 kcal Total: -78.99 -0.82 -79.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199394484.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.916 kcal (2) G-P(sol) polarization free energy of solvation -78.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds