Wall clock time and date at job start Tue Mar 31 2020 22:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30262 * 125.61709 * 2 1 4 4 C 1.34483 * 108.69936 * 180.02562 * 3 2 1 5 5 C 1.50699 * 126.16509 * 179.97438 * 4 3 2 6 6 N 1.46906 * 109.47140 * 275.02431 * 5 4 3 7 7 C 1.46898 * 110.99888 * 180.02562 * 6 5 4 8 8 H 1.08997 * 110.30525 * 32.82266 * 7 6 5 9 9 C 1.54384 * 110.34239 * 270.53363 * 7 6 5 10 10 N 1.48146 * 104.62027 * 217.26700 * 9 7 6 11 11 C 1.34781 * 127.83612 * 219.61275 * 10 9 7 12 12 O 1.21278 * 119.99871 * 359.97438 * 11 10 9 13 13 C 1.50696 * 119.99778 * 179.97438 * 11 10 9 14 14 S 1.80995 * 109.47132 * 179.97438 * 13 11 10 15 15 C 1.76209 * 100.00190 * 179.97438 * 14 13 11 16 16 H 1.08000 * 119.99839 * 0.02562 * 15 14 13 17 17 C 1.38796 * 119.99956 * 179.97438 * 15 14 13 18 18 N 1.31629 * 119.99716 * 179.97438 * 17 15 14 19 19 Si 1.86796 * 120.00370 * 0.02562 * 17 15 14 20 20 H 1.48502 * 109.47424 * 89.99632 * 19 17 15 21 21 H 1.48497 * 109.47443 * 210.00078 * 19 17 15 22 22 H 1.48504 * 109.46900 * 329.99935 * 19 17 15 23 23 C 1.48149 * 104.32330 * 39.58419 * 10 9 7 24 24 C 1.54287 * 110.34025 * 155.00142 * 7 6 5 25 25 H 1.09003 * 110.34716 * 359.97438 * 24 7 6 26 26 C 1.53000 * 110.34055 * 237.74253 * 24 7 6 27 27 C 1.34328 * 107.66634 * 0.26162 * 4 3 2 28 28 O 1.33971 * 125.62374 * 180.02562 * 2 1 3 29 29 H 1.09000 * 109.47082 * 90.00415 * 1 2 3 30 30 H 1.08998 * 109.47106 * 210.00583 * 1 2 3 31 31 H 1.08999 * 109.47463 * 330.00097 * 1 2 3 32 32 H 1.09000 * 109.47247 * 155.02453 * 5 4 3 33 33 H 1.09001 * 109.47358 * 35.01879 * 5 4 3 34 34 H 1.00902 * 110.99923 * 303.95945 * 6 5 4 35 35 H 1.09002 * 110.41175 * 336.05312 * 9 7 6 36 36 H 1.09003 * 110.40490 * 98.47789 * 9 7 6 37 37 H 1.09004 * 109.47538 * 299.99832 * 13 11 10 38 38 H 1.09004 * 109.47424 * 59.99711 * 13 11 10 39 39 H 0.96998 * 120.00096 * 180.02562 * 18 17 15 40 40 H 1.08996 * 110.40499 * 201.63098 * 23 10 9 41 41 H 1.08993 * 110.50236 * 79.25182 * 23 10 9 42 42 H 1.08993 * 109.47388 * 59.99900 * 26 24 7 43 43 H 1.09001 * 109.47055 * 180.02562 * 26 24 7 44 44 H 1.09001 * 109.47254 * 299.99557 * 26 24 7 45 45 H 1.08004 * 126.43832 * 179.73772 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0589 0.0000 4 6 3.5522 0.6676 -0.0006 5 6 4.7570 1.5728 -0.0013 6 7 5.0750 1.9637 -1.3813 7 6 6.2473 2.8480 -1.4210 8 1 6.9445 2.5879 -0.6246 9 6 5.8111 4.3235 -1.2949 10 7 6.7264 5.0623 -2.1955 11 6 7.3017 6.2630 -1.9858 12 8 7.0866 6.8669 -0.9562 13 6 8.2121 6.8551 -3.0305 14 16 8.8219 8.4607 -2.4595 15 6 9.8308 8.9107 -3.8323 16 1 9.9142 8.2484 -4.6812 17 6 10.5176 10.1168 -3.8229 18 7 11.2717 10.4527 -4.8482 19 14 10.3729 11.2628 -2.3549 20 1 11.4319 10.9369 -1.3662 21 1 10.5328 12.6684 -2.8064 22 1 9.0387 11.0940 -1.7249 23 6 6.8665 4.1817 -3.3785 24 6 6.9432 2.7545 -2.7949 25 1 6.4155 2.0520 -3.4401 26 6 8.4024 2.3274 -2.6239 27 6 3.5697 -0.6756 -0.0068 28 8 2.2873 -1.0890 -0.0005 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 5.6073 1.0463 0.4323 33 1 4.5423 2.4640 0.5884 34 1 5.2148 1.1518 -1.9639 35 1 4.7780 4.4437 -1.6212 36 1 5.9286 4.6681 -0.2675 37 1 9.0552 6.1851 -3.1997 38 1 7.6601 6.9865 -3.9612 39 1 11.7520 11.2954 -4.8415 40 1 7.7804 4.4193 -3.9231 41 1 5.9995 4.2791 -4.0318 42 1 8.4411 1.3521 -2.1388 43 1 8.8801 2.2663 -3.6018 44 1 8.9259 3.0599 -2.0095 45 1 4.4469 -1.3056 -0.0128 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001214173524.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:40 Heat of formation + Delta-G solvation = -5.385573 kcal Electronic energy + Delta-G solvation = -26155.487651 eV Core-core repulsion = 22301.097200 eV Total energy + Delta-G solvation = -3854.390451 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.71392 -40.08090 -38.01961 -36.10810 -34.61620 -32.83924 -32.42574 -32.14083 -30.24973 -28.81373 -27.42825 -26.58949 -25.70255 -25.44217 -22.62890 -21.98049 -21.37262 -20.34004 -19.45847 -17.76768 -17.47738 -17.17935 -16.66242 -16.38423 -15.85242 -15.42995 -15.03591 -14.89185 -14.78771 -14.44880 -14.30293 -14.01364 -13.76273 -13.57338 -13.46764 -13.29009 -13.02769 -12.78660 -12.74208 -12.67787 -12.20381 -11.93664 -11.78611 -11.57310 -11.25340 -11.21542 -11.20471 -10.99446 -10.94806 -10.84321 -10.58989 -9.84470 -9.49319 -9.22792 -8.99088 -8.90815 -8.55477 -8.47656 -6.90303 -6.27658 -3.99233 1.03006 2.21279 2.35202 2.70176 2.98106 3.20417 3.34479 3.52369 3.53176 3.61645 3.89244 4.16012 4.33438 4.34765 4.41198 4.44842 4.65654 4.73405 4.78460 4.90154 4.96637 5.05234 5.10396 5.11464 5.17199 5.20888 5.21265 5.26271 5.41389 5.49643 5.54521 5.55534 5.67417 5.71387 5.76713 5.78632 5.87080 5.91221 5.97937 6.03639 6.24887 6.63811 6.92009 7.38846 7.68184 7.95410 8.42720 8.47936 9.18635 10.81515 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.027221 B = 0.001907 C = 0.001838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.382374 B =14675.797357 C =15232.223299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.188 3.812 3 N -0.465 5.465 4 C -0.003 4.003 5 C 0.138 3.862 6 N -0.672 5.672 7 C 0.077 3.923 8 H 0.062 0.938 9 C 0.117 3.883 10 N -0.627 5.627 11 C 0.553 3.447 12 O -0.519 6.519 13 C -0.117 4.117 14 S -0.142 6.142 15 C -0.521 4.521 16 H 0.088 0.912 17 C 0.096 3.904 18 N -0.880 5.880 19 Si 0.856 3.144 20 H -0.267 1.267 21 H -0.274 1.274 22 H -0.235 1.235 23 C 0.107 3.893 24 C -0.107 4.107 25 H 0.091 0.909 26 C -0.146 4.146 27 C -0.075 4.075 28 O -0.205 6.205 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.101 0.899 32 H 0.050 0.950 33 H 0.093 0.907 34 H 0.343 0.657 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.270 0.730 40 H 0.084 0.916 41 H 0.075 0.925 42 H 0.054 0.946 43 H 0.063 0.937 44 H 0.061 0.939 45 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.957 -28.012 7.063 33.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.019 4.019 3 N -0.195 5.195 4 C -0.124 4.124 5 C 0.009 3.991 6 N -0.304 5.304 7 C -0.034 4.034 8 H 0.080 0.920 9 C -0.007 4.007 10 N -0.364 5.364 11 C 0.342 3.658 12 O -0.393 6.393 13 C -0.267 4.267 14 S 0.084 5.916 15 C -0.668 4.668 16 H 0.106 0.894 17 C -0.113 4.113 18 N -0.517 5.517 19 Si 0.681 3.319 20 H -0.192 1.192 21 H -0.199 1.199 22 H -0.159 1.159 23 C -0.016 4.016 24 C -0.126 4.126 25 H 0.109 0.891 26 C -0.204 4.204 27 C -0.147 4.147 28 O -0.091 6.091 29 H 0.112 0.888 30 H 0.106 0.894 31 H 0.120 0.880 32 H 0.068 0.932 33 H 0.111 0.889 34 H 0.163 0.837 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.113 0.887 38 H 0.115 0.885 39 H 0.080 0.920 40 H 0.102 0.898 41 H 0.093 0.907 42 H 0.073 0.927 43 H 0.082 0.918 44 H 0.080 0.920 45 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -17.798 -25.752 8.522 32.444 hybrid contribution 1.498 -1.536 -0.690 2.254 sum -16.301 -27.289 7.832 32.737 Atomic orbital electron populations 1.20266 0.81289 1.05131 1.04807 1.26415 0.96640 0.78574 1.00309 1.70396 1.01564 1.29944 1.17571 1.21598 0.93281 0.92170 1.05311 1.20225 0.90587 0.97371 0.90929 1.60421 1.38961 1.21685 1.09379 1.22552 0.90009 0.93629 0.97186 0.91980 1.22255 0.94066 0.88727 0.95607 1.48896 1.48454 1.18874 1.20201 1.19925 0.79512 0.78684 0.87718 1.90707 1.61433 1.59146 1.28044 1.23243 1.00755 1.02338 1.00406 1.84799 1.60798 1.16451 1.29530 1.22311 1.31600 1.08858 1.04043 0.89396 1.24704 0.93547 0.96852 0.96178 1.69938 1.28560 1.23408 1.29791 0.86738 0.81595 0.80525 0.83030 1.19223 1.19937 1.15891 1.22411 1.02667 0.87963 0.88597 1.22300 0.96893 0.97490 0.95960 0.89097 1.21881 0.94858 1.01133 1.02509 1.24775 0.85086 0.96134 1.08666 1.84441 1.16862 1.37907 1.69920 0.88834 0.89417 0.88005 0.93158 0.88855 0.83746 0.90035 0.90329 0.88650 0.88544 0.91961 0.89753 0.90721 0.92689 0.91822 0.92001 0.77056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.23 10.51 36.00 0.38 0.15 16 2 C 0.19 1.56 8.34 -12.95 -0.11 1.46 16 3 N -0.46 -4.96 11.29 -7.36 -0.08 -5.04 16 4 C 0.00 -0.03 6.62 -82.81 -0.55 -0.58 16 5 C 0.14 1.08 6.08 -4.97 -0.03 1.05 16 6 N -0.67 -5.35 6.28 -106.51 -0.67 -6.02 16 7 C 0.08 0.68 3.05 -66.31 -0.20 0.48 16 8 H 0.06 0.55 7.39 -51.93 -0.38 0.17 16 9 C 0.12 1.45 6.75 -2.41 -0.02 1.44 16 10 N -0.63 -9.00 3.32 -169.31 -0.56 -9.56 16 11 C 0.55 10.51 7.93 -10.99 -0.09 10.42 16 12 O -0.52 -11.83 16.13 5.56 0.09 -11.74 16 13 C -0.12 -2.35 5.13 36.00 0.18 -2.16 16 14 S -0.14 -3.68 18.55 -107.50 -1.99 -5.67 16 15 C -0.52 -15.12 10.04 30.94 0.31 -14.81 16 16 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 17 C 0.10 2.82 5.50 -17.43 -0.10 2.73 16 18 N -0.88 -26.66 13.97 55.49 0.78 -25.89 16 19 Si 0.86 21.99 27.74 -169.99 -4.72 17.28 16 20 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.23 -6.05 6.74 56.52 0.38 -5.67 16 23 C 0.11 1.14 6.46 -2.41 -0.02 1.12 16 24 C -0.11 -0.86 3.33 -89.22 -0.30 -1.16 16 25 H 0.09 0.59 7.52 -51.93 -0.39 0.20 16 26 C -0.15 -1.15 8.90 37.16 0.33 -0.82 16 27 C -0.08 -0.52 12.08 29.35 0.35 -0.16 16 28 O -0.20 -1.68 10.78 5.37 0.06 -1.62 16 29 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.05 0.29 8.07 -51.93 -0.42 -0.12 16 33 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.34 2.22 8.04 -39.29 -0.32 1.90 16 35 H 0.08 1.05 8.06 -51.93 -0.42 0.63 16 36 H 0.08 1.08 7.88 -51.93 -0.41 0.67 16 37 H 0.10 1.78 7.95 -51.91 -0.41 1.36 16 38 H 0.10 1.83 8.14 -51.91 -0.42 1.40 16 39 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 40 H 0.08 0.89 7.02 -51.93 -0.36 0.52 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.21 0.65 8.06 -52.48 -0.42 0.22 16 LS Contribution 389.34 15.07 5.87 5.87 Total: -1.00 -36.71 389.34 -7.99 -44.70 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -6.92 Total: -1.45 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: 0.16 Total: -0.86 kcal Atomic # 7 Polarization: -45.97 SS G_CDS: -0.54 Total: -46.51 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: 0.15 Total: -13.36 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.72 Total: 17.28 kcal Atomic # 16 Polarization: -3.68 SS G_CDS: -1.99 Total: -5.67 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -36.71 -7.99 -44.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214173524.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.314 kcal (2) G-P(sol) polarization free energy of solvation -36.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds