Wall clock time and date at job start Tue Mar 31 2020 22:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30251 * 125.62111 * 2 1 4 4 C 1.34476 * 108.69867 * 179.83751 * 3 2 1 5 5 C 1.50707 * 126.16604 * 180.16888 * 4 3 2 6 6 N 1.46902 * 109.47002 * 275.30529 * 5 4 3 7 7 C 1.47480 * 110.99777 * 265.96694 * 6 5 4 8 8 C 1.53504 * 87.93264 * 221.29904 * 7 6 5 9 9 C 1.47482 * 110.99931 * 170.00050 * 6 5 4 10 10 H 1.09003 * 113.47504 * 23.93126 * 9 6 5 11 11 C 1.53002 * 113.47304 * 253.46793 * 9 6 5 12 12 N 1.46501 * 109.47085 * 55.00086 * 11 9 6 13 13 C 1.46496 * 120.00279 * 89.99904 * 12 11 9 14 14 C 1.34781 * 119.99987 * 269.99950 * 12 11 9 15 15 O 1.21282 * 119.99809 * 359.97438 * 14 12 11 16 16 C 1.50694 * 120.00023 * 180.02562 * 14 12 11 17 17 S 1.80999 * 109.47115 * 179.97438 * 16 14 12 18 18 C 1.76199 * 100.00109 * 179.97438 * 17 16 14 19 19 H 1.07997 * 119.99846 * 0.02562 * 18 17 16 20 20 C 1.38799 * 119.99913 * 179.97438 * 18 17 16 21 21 N 1.31632 * 120.00326 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00117 * 180.02562 * 20 18 17 23 23 H 1.48510 * 109.46852 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.47600 * 119.99521 * 22 20 18 25 25 H 1.48496 * 109.47341 * 240.00283 * 22 20 18 26 26 C 1.34324 * 107.67032 * 0.42409 * 4 3 2 27 27 O 1.33964 * 125.61467 * 180.30782 * 2 1 3 28 28 H 1.08995 * 109.47411 * 179.71540 * 1 2 3 29 29 H 1.08998 * 109.46596 * 299.71479 * 1 2 3 30 30 H 1.09004 * 109.46950 * 59.71299 * 1 2 3 31 31 H 1.09003 * 109.46538 * 35.30234 * 5 4 3 32 32 H 1.08998 * 109.46904 * 155.30055 * 5 4 3 33 33 H 1.09004 * 113.47745 * 336.06748 * 7 6 5 34 34 H 1.09007 * 113.47377 * 106.53073 * 7 6 5 35 35 H 1.09006 * 114.17081 * 272.37416 * 8 7 6 36 36 H 1.08997 * 114.34376 * 139.68533 * 8 7 6 37 37 H 1.08998 * 109.46879 * 174.99744 * 11 9 6 38 38 H 1.09001 * 109.47114 * 295.00014 * 11 9 6 39 39 H 1.09001 * 109.47107 * 89.99526 * 13 12 11 40 40 H 1.09002 * 109.47457 * 209.99796 * 13 12 11 41 41 H 1.09006 * 109.47193 * 329.99827 * 13 12 11 42 42 H 1.08999 * 109.47285 * 299.99558 * 16 14 12 43 43 H 1.08997 * 109.47271 * 60.00072 * 16 14 12 44 44 H 0.96997 * 120.00205 * 179.97438 * 21 20 18 45 45 H 1.08003 * 126.44751 * 179.75942 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2657 1.0588 0.0000 4 6 3.5522 0.6674 0.0036 5 6 4.7572 1.5725 0.0085 6 7 5.0761 1.9706 -1.3691 7 6 6.0873 1.0729 -1.9580 8 6 6.7504 2.3136 -2.5721 9 6 6.0937 3.0379 -1.3887 10 1 6.7160 3.0610 -0.4941 11 6 5.5284 4.4123 -1.7529 12 7 4.4271 4.7434 -0.8453 13 6 4.6977 5.4578 0.4048 14 6 3.1649 4.3909 -1.1603 15 8 2.9409 3.7998 -2.1954 16 6 2.0321 4.7320 -0.2270 17 16 0.4738 4.1308 -0.9244 18 6 -0.6449 4.6489 0.3344 19 1 -0.2749 5.1721 1.2037 20 6 -2.0019 4.3857 0.2081 21 7 -2.4531 3.7494 -0.8522 22 14 -3.1881 4.9356 1.5422 23 1 -2.4351 5.6254 2.6205 24 1 -4.1881 5.8675 0.9621 25 1 -3.8838 3.7506 2.1052 26 6 3.5698 -0.6757 -0.0036 27 8 2.2872 -1.0890 -0.0059 28 1 -0.3634 -1.0276 -0.0051 29 1 -0.3632 0.5094 0.8925 30 1 -0.3633 0.5183 -0.8874 31 1 4.5420 2.4606 0.6028 32 1 5.6070 1.0437 0.4400 33 1 6.7080 0.5715 -1.2153 34 1 5.6792 0.3865 -2.6999 35 1 6.3513 2.5970 -3.5461 36 1 7.8399 2.3031 -2.5399 37 1 6.3128 5.1635 -1.6617 38 1 5.1606 4.3936 -2.7788 39 1 4.6353 6.5320 0.2302 40 1 3.9621 5.1683 1.1553 41 1 5.6971 5.2048 0.7589 42 1 2.2036 4.2600 0.7404 43 1 1.9794 5.8132 -0.0995 44 1 -3.4013 3.5651 -0.9402 45 1 4.4468 -1.3059 -0.0068 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230815940.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:35 Heat of formation + Delta-G solvation = 42.475955 kcal Electronic energy + Delta-G solvation = -28652.210456 eV Core-core repulsion = 24799.895437 eV Total energy + Delta-G solvation = -3852.315019 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.84288 -40.45096 -38.58944 -34.95460 -34.57503 -32.40168 -32.28486 -30.51981 -29.75027 -27.80815 -27.10694 -26.07296 -25.31835 -24.55213 -23.14843 -21.11589 -20.56398 -19.75026 -18.93704 -17.46971 -16.84204 -16.48071 -16.23723 -15.94780 -15.70893 -15.62076 -14.73768 -14.68536 -14.43003 -13.95800 -13.69775 -13.55106 -13.03037 -12.90214 -12.88776 -12.61159 -12.45725 -12.39619 -12.21208 -11.97049 -11.86428 -11.68332 -11.46326 -11.28319 -11.16897 -10.99758 -10.85606 -10.65183 -10.60806 -10.37227 -9.77231 -9.62851 -8.93829 -8.93111 -8.85308 -8.31403 -8.14609 -7.94528 -6.21232 -6.08146 -3.70536 1.85864 3.10942 3.19500 3.21475 3.26876 3.34283 3.38629 3.52373 3.84015 4.11886 4.33311 4.35392 4.47489 4.67949 4.98813 5.03085 5.06217 5.13730 5.22177 5.26085 5.27282 5.32102 5.42044 5.43792 5.52113 5.57287 5.65511 5.72281 5.78916 5.84596 5.86773 6.00180 6.09354 6.11398 6.14308 6.19933 6.32194 6.39005 6.41034 6.53800 6.82185 6.94002 7.10835 7.72798 7.87908 8.35753 8.49033 9.01252 9.37648 10.98846 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011571 B = 0.004667 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2419.242958 B = 5997.748089 C = 7697.510650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 C 0.200 3.800 3 N -0.431 5.431 4 C 0.007 3.993 5 C 0.105 3.895 6 N -0.429 5.429 7 C -0.007 4.007 8 C -0.135 4.135 9 C 0.009 3.991 10 H 0.073 0.927 11 C 0.138 3.862 12 N -0.629 5.629 13 C 0.083 3.917 14 C 0.541 3.459 15 O -0.489 6.489 16 C -0.141 4.141 17 S -0.041 6.041 18 C -0.527 4.527 19 H 0.066 0.934 20 C 0.075 3.925 21 N -0.869 5.869 22 Si 0.909 3.091 23 H -0.274 1.274 24 H -0.282 1.282 25 H -0.282 1.282 26 C -0.099 4.099 27 O -0.213 6.213 28 H 0.074 0.926 29 H 0.098 0.902 30 H 0.108 0.892 31 H 0.085 0.915 32 H 0.052 0.948 33 H 0.063 0.937 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.088 0.912 39 H 0.050 0.950 40 H 0.071 0.929 41 H 0.060 0.940 42 H 0.082 0.918 43 H 0.075 0.925 44 H 0.264 0.736 45 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.410 -5.070 2.616 20.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.007 4.007 3 N -0.159 5.159 4 C -0.114 4.114 5 C -0.024 4.024 6 N -0.151 5.151 7 C -0.136 4.136 8 C -0.173 4.173 9 C -0.102 4.102 10 H 0.091 0.909 11 C 0.014 3.986 12 N -0.366 5.366 13 C -0.061 4.061 14 C 0.328 3.672 15 O -0.360 6.360 16 C -0.292 4.292 17 S 0.186 5.814 18 C -0.675 4.675 19 H 0.085 0.915 20 C -0.134 4.134 21 N -0.506 5.506 22 Si 0.736 3.264 23 H -0.198 1.198 24 H -0.208 1.208 25 H -0.208 1.208 26 C -0.171 4.171 27 O -0.101 6.101 28 H 0.093 0.907 29 H 0.117 0.883 30 H 0.126 0.874 31 H 0.104 0.896 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.102 0.898 35 H 0.115 0.885 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.106 0.894 39 H 0.069 0.931 40 H 0.089 0.911 41 H 0.079 0.921 42 H 0.100 0.900 43 H 0.093 0.907 44 H 0.074 0.926 45 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 17.961 -5.334 0.691 18.749 hybrid contribution 0.691 0.187 2.848 2.936 sum 18.653 -5.148 3.538 19.671 Atomic orbital electron populations 1.20261 0.80942 1.03098 1.06729 1.26561 0.96633 0.78075 0.99418 1.70615 1.00251 1.29083 1.15981 1.21405 0.93603 0.91690 1.04653 1.20827 0.91958 0.97597 0.91995 1.69120 1.26943 1.03737 1.15315 1.23854 0.93635 0.96590 0.99501 1.23131 0.99354 0.96051 0.98742 1.23853 0.93203 0.94955 0.98141 0.90937 1.21280 0.88666 0.93076 0.95593 1.47778 1.06955 1.59977 1.21903 1.21686 1.01371 0.96386 0.86668 1.20048 0.82247 0.77985 0.86950 1.90683 1.82633 1.37459 1.25215 1.23448 1.00527 1.03307 1.01916 1.85268 0.91612 1.75851 1.28637 1.22958 0.94241 1.42277 1.08058 0.91533 1.24876 0.97213 0.95159 0.96118 1.70032 1.14479 1.39051 1.27016 0.86270 0.80498 0.78416 0.81222 1.19844 1.20799 1.20757 1.24407 0.85139 0.96077 1.11451 1.84415 1.16609 1.38568 1.70526 0.90737 0.88349 0.87351 0.89630 0.93022 0.91867 0.89845 0.88546 0.90818 0.91020 0.89393 0.93104 0.91078 0.92121 0.90001 0.90710 0.92602 0.78237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.90 10.51 36.01 0.38 -0.52 16 2 C 0.20 3.73 8.34 -12.95 -0.11 3.62 16 3 N -0.43 -8.77 11.29 -7.36 -0.08 -8.85 16 4 C 0.01 0.13 6.69 -82.81 -0.55 -0.43 16 5 C 0.10 1.48 5.36 -4.97 -0.03 1.45 16 6 N -0.43 -6.06 4.92 -237.96 -1.17 -7.23 16 7 C -0.01 -0.07 7.71 -7.56 -0.06 -0.13 16 8 C -0.13 -1.26 8.00 -26.21 -0.21 -1.46 16 9 C 0.01 0.10 3.35 -71.44 -0.24 -0.14 16 10 H 0.07 0.68 7.91 -51.93 -0.41 0.27 16 11 C 0.14 1.70 5.58 -4.04 -0.02 1.68 16 12 N -0.63 -9.36 2.63 -181.57 -0.48 -9.83 16 13 C 0.08 0.94 10.24 59.84 0.61 1.56 16 14 C 0.54 10.83 7.17 -10.99 -0.08 10.75 16 15 O -0.49 -11.61 14.87 5.56 0.08 -11.52 16 16 C -0.14 -3.09 4.71 36.00 0.17 -2.92 16 17 S -0.04 -1.12 20.57 -107.50 -2.21 -3.33 16 18 C -0.53 -15.10 9.50 30.94 0.29 -14.81 16 19 H 0.07 1.86 7.80 -52.49 -0.41 1.45 16 20 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 21 N -0.87 -25.75 13.22 55.49 0.73 -25.01 16 22 Si 0.91 21.52 29.55 -169.99 -5.02 16.50 16 23 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 26 C -0.10 -1.45 12.08 29.35 0.35 -1.10 16 27 O -0.21 -3.56 10.78 5.37 0.06 -3.50 16 28 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.10 1.70 8.14 -51.93 -0.42 1.28 16 30 H 0.11 2.09 8.14 -51.93 -0.42 1.66 16 31 H 0.09 1.31 7.89 -51.93 -0.41 0.90 16 32 H 0.05 0.57 7.30 -51.93 -0.38 0.19 16 33 H 0.06 0.54 7.42 -51.93 -0.39 0.16 16 34 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.10 1.00 7.94 -51.93 -0.41 0.59 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.66 8.07 -51.93 -0.42 0.24 16 38 H 0.09 1.29 7.15 -51.93 -0.37 0.92 16 39 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.87 6.44 -51.93 -0.33 0.54 16 41 H 0.06 0.52 8.07 -51.93 -0.42 0.10 16 42 H 0.08 1.76 7.40 -51.92 -0.38 1.38 16 43 H 0.07 1.56 8.11 -51.92 -0.42 1.14 16 44 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 45 H 0.20 2.02 8.06 -52.48 -0.42 1.60 16 LS Contribution 390.62 15.07 5.89 5.89 Total: -1.00 -36.29 390.62 -8.64 -44.93 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -6.85 Total: 2.38 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: 0.42 Total: -0.42 kcal Atomic # 7 Polarization: -49.93 SS G_CDS: -1.00 Total: -50.93 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: 0.14 Total: -15.03 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -1.12 SS G_CDS: -2.21 Total: -3.33 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -36.29 -8.64 -44.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230815940.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.409 kcal (2) G-P(sol) polarization free energy of solvation -36.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds