Wall clock time and date at job start Tue Mar 31 2020 22:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30251 * 125.62111 * 2 1 4 4 C 1.34476 * 108.69867 * 179.83751 * 3 2 1 5 5 C 1.50707 * 126.16604 * 180.16888 * 4 3 2 6 6 N 1.46902 * 109.47002 * 275.30529 * 5 4 3 7 7 C 1.47480 * 110.99777 * 265.96694 * 6 5 4 8 8 C 1.53504 * 87.93264 * 221.29904 * 7 6 5 9 9 C 1.47482 * 110.99931 * 170.00050 * 6 5 4 10 10 H 1.09003 * 113.47504 * 23.93126 * 9 6 5 11 11 C 1.53002 * 113.47304 * 253.46793 * 9 6 5 12 12 N 1.46501 * 109.47085 * 55.00086 * 11 9 6 13 13 C 1.46496 * 120.00279 * 89.99904 * 12 11 9 14 14 C 1.34781 * 119.99987 * 269.99950 * 12 11 9 15 15 O 1.21282 * 119.99809 * 359.97438 * 14 12 11 16 16 C 1.50694 * 120.00023 * 180.02562 * 14 12 11 17 17 S 1.80999 * 109.47115 * 179.97438 * 16 14 12 18 18 C 1.76199 * 100.00109 * 179.97438 * 17 16 14 19 19 H 1.07997 * 119.99846 * 0.02562 * 18 17 16 20 20 C 1.38799 * 119.99913 * 179.97438 * 18 17 16 21 21 N 1.31632 * 120.00326 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00117 * 180.02562 * 20 18 17 23 23 H 1.48510 * 109.46852 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.47600 * 119.99521 * 22 20 18 25 25 H 1.48496 * 109.47341 * 240.00283 * 22 20 18 26 26 C 1.34324 * 107.67032 * 0.42409 * 4 3 2 27 27 O 1.33964 * 125.61467 * 180.30782 * 2 1 3 28 28 H 1.08995 * 109.47411 * 179.71540 * 1 2 3 29 29 H 1.08998 * 109.46596 * 299.71479 * 1 2 3 30 30 H 1.09004 * 109.46950 * 59.71299 * 1 2 3 31 31 H 1.09003 * 109.46538 * 35.30234 * 5 4 3 32 32 H 1.08998 * 109.46904 * 155.30055 * 5 4 3 33 33 H 1.09004 * 113.47745 * 336.06748 * 7 6 5 34 34 H 1.09007 * 113.47377 * 106.53073 * 7 6 5 35 35 H 1.09006 * 114.17081 * 272.37416 * 8 7 6 36 36 H 1.08997 * 114.34376 * 139.68533 * 8 7 6 37 37 H 1.08998 * 109.46879 * 174.99744 * 11 9 6 38 38 H 1.09001 * 109.47114 * 295.00014 * 11 9 6 39 39 H 1.09001 * 109.47107 * 89.99526 * 13 12 11 40 40 H 1.09002 * 109.47457 * 209.99796 * 13 12 11 41 41 H 1.09006 * 109.47193 * 329.99827 * 13 12 11 42 42 H 1.08999 * 109.47285 * 299.99558 * 16 14 12 43 43 H 1.08997 * 109.47271 * 60.00072 * 16 14 12 44 44 H 0.96997 * 120.00205 * 179.97438 * 21 20 18 45 45 H 1.08003 * 126.44751 * 179.75942 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2657 1.0588 0.0000 4 6 3.5522 0.6674 0.0036 5 6 4.7572 1.5725 0.0085 6 7 5.0761 1.9706 -1.3691 7 6 6.0873 1.0729 -1.9580 8 6 6.7504 2.3136 -2.5721 9 6 6.0937 3.0379 -1.3887 10 1 6.7160 3.0610 -0.4941 11 6 5.5284 4.4123 -1.7529 12 7 4.4271 4.7434 -0.8453 13 6 4.6977 5.4578 0.4048 14 6 3.1649 4.3909 -1.1603 15 8 2.9409 3.7998 -2.1954 16 6 2.0321 4.7320 -0.2270 17 16 0.4738 4.1308 -0.9244 18 6 -0.6449 4.6489 0.3344 19 1 -0.2749 5.1721 1.2037 20 6 -2.0019 4.3857 0.2081 21 7 -2.4531 3.7494 -0.8522 22 14 -3.1881 4.9356 1.5422 23 1 -2.4351 5.6254 2.6205 24 1 -4.1881 5.8675 0.9621 25 1 -3.8838 3.7506 2.1052 26 6 3.5698 -0.6757 -0.0036 27 8 2.2872 -1.0890 -0.0059 28 1 -0.3634 -1.0276 -0.0051 29 1 -0.3632 0.5094 0.8925 30 1 -0.3633 0.5183 -0.8874 31 1 4.5420 2.4606 0.6028 32 1 5.6070 1.0437 0.4400 33 1 6.7080 0.5715 -1.2153 34 1 5.6792 0.3865 -2.6999 35 1 6.3513 2.5970 -3.5461 36 1 7.8399 2.3031 -2.5399 37 1 6.3128 5.1635 -1.6617 38 1 5.1606 4.3936 -2.7788 39 1 4.6353 6.5320 0.2302 40 1 3.9621 5.1683 1.1553 41 1 5.6971 5.2048 0.7589 42 1 2.2036 4.2600 0.7404 43 1 1.9794 5.8132 -0.0995 44 1 -3.4013 3.5651 -0.9402 45 1 4.4468 -1.3059 -0.0068 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230815940.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:34 Heat of formation + Delta-G solvation = 14.479139 kcal Electronic energy + Delta-G solvation = -28653.424489 eV Core-core repulsion = 24799.895437 eV Total energy + Delta-G solvation = -3853.529052 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.12625 -41.42719 -39.95513 -36.28481 -35.85338 -34.47830 -33.62415 -31.79921 -30.99808 -29.07574 -28.32217 -27.57157 -27.10111 -25.56304 -24.15810 -22.44707 -21.77814 -20.70710 -20.32342 -19.37919 -18.03566 -17.77104 -17.63846 -17.10907 -16.89668 -16.79929 -16.70241 -15.96895 -15.73510 -15.56869 -15.03325 -14.70484 -14.46277 -14.24178 -14.03754 -13.98716 -13.89562 -13.78013 -13.30870 -13.22771 -13.13709 -13.02540 -12.88892 -12.69621 -12.59869 -12.47780 -12.27230 -12.12134 -11.62138 -11.58325 -11.48674 -11.11372 -11.05884 -10.53094 -10.05033 -9.79661 -9.55371 -9.28429 -8.41124 -8.23999 -5.93837 0.60920 1.33795 1.40748 1.50348 1.67367 1.84981 1.95828 1.96176 2.29164 2.39823 3.08140 3.16280 3.26850 3.45864 3.61287 3.81572 3.95125 3.96723 4.02478 4.25898 4.31219 4.33710 4.37927 4.39603 4.41007 4.50789 4.56479 4.61761 4.64468 4.66926 4.75037 4.83560 4.91000 4.93141 5.02187 5.03477 5.07524 5.20699 5.30807 5.44279 5.49234 5.53933 5.84360 6.24744 6.28595 6.53569 7.06562 7.16950 7.52429 8.84513 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011571 B = 0.004667 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2419.242958 B = 5997.748089 C = 7697.510650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 C 0.175 3.825 3 N -0.473 5.473 4 C -0.022 4.022 5 C 0.112 3.888 6 N -0.477 5.477 7 C -0.004 4.004 8 C -0.120 4.120 9 C 0.014 3.986 10 H 0.103 0.897 11 C 0.133 3.867 12 N -0.617 5.617 13 C 0.076 3.924 14 C 0.544 3.456 15 O -0.536 6.536 16 C -0.117 4.117 17 S -0.110 6.110 18 C -0.543 4.543 19 H 0.066 0.934 20 C 0.023 3.977 21 N -0.905 5.905 22 Si 0.985 3.015 23 H -0.265 1.265 24 H -0.275 1.275 25 H -0.271 1.271 26 C -0.080 4.080 27 O -0.214 6.214 28 H 0.109 0.891 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.109 0.891 37 H 0.113 0.887 38 H 0.057 0.943 39 H 0.065 0.935 40 H 0.057 0.943 41 H 0.100 0.900 42 H 0.081 0.919 43 H 0.083 0.917 44 H 0.269 0.731 45 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.546 -5.080 4.448 23.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.032 4.032 3 N -0.202 5.202 4 C -0.143 4.143 5 C -0.016 4.016 6 N -0.199 5.199 7 C -0.133 4.133 8 C -0.158 4.158 9 C -0.096 4.096 10 H 0.120 0.880 11 C 0.010 3.990 12 N -0.352 5.352 13 C -0.066 4.066 14 C 0.330 3.670 15 O -0.411 6.411 16 C -0.268 4.268 17 S 0.118 5.882 18 C -0.691 4.691 19 H 0.084 0.916 20 C -0.182 4.182 21 N -0.542 5.542 22 Si 0.808 3.192 23 H -0.189 1.189 24 H -0.201 1.201 25 H -0.197 1.197 26 C -0.150 4.150 27 O -0.102 6.102 28 H 0.128 0.872 29 H 0.105 0.895 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.106 0.894 33 H 0.112 0.888 34 H 0.083 0.917 35 H 0.095 0.905 36 H 0.127 0.873 37 H 0.131 0.869 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.076 0.924 41 H 0.119 0.881 42 H 0.099 0.901 43 H 0.101 0.899 44 H 0.078 0.922 45 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 21.151 -5.330 2.542 21.960 hybrid contribution -0.120 0.208 2.250 2.263 sum 21.031 -5.122 4.792 22.170 Atomic orbital electron populations 1.20110 0.80835 1.04668 1.04437 1.26629 0.97089 0.78546 1.00986 1.70567 1.02447 1.30542 1.16676 1.22015 0.93297 0.93316 1.05646 1.20844 0.91888 0.96669 0.92218 1.69106 1.29326 1.05946 1.15565 1.23916 0.93117 0.96565 0.99692 1.23037 1.01119 0.94566 0.97096 1.23926 0.92675 0.93106 0.99929 0.87969 1.21554 0.88370 0.95664 0.93409 1.47696 1.05653 1.58662 1.23166 1.21947 1.03226 0.96805 0.84634 1.19661 0.83542 0.77915 0.85839 1.90664 1.83623 1.39921 1.26892 1.23240 0.98452 1.03210 1.01905 1.85386 0.95569 1.76991 1.30296 1.23178 0.95035 1.42725 1.08136 0.91592 1.25852 0.98918 0.94847 0.98551 1.70177 1.15102 1.39886 1.29040 0.85117 0.77798 0.78260 0.78069 1.18928 1.20072 1.19655 1.25296 0.85319 0.96093 1.08315 1.84409 1.17497 1.37944 1.70316 0.87201 0.89506 0.90705 0.91621 0.89425 0.88833 0.91667 0.90486 0.87288 0.86870 0.92491 0.91623 0.92421 0.88100 0.90066 0.89889 0.92241 0.73468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -1.57 10.51 71.24 0.75 -0.82 16 2 C 0.17 6.79 8.34 88.35 0.74 7.53 16 3 N -0.47 -20.03 11.29 -291.98 -3.30 -23.33 16 4 C -0.02 -0.74 6.69 41.26 0.28 -0.46 16 5 C 0.11 2.95 5.36 85.56 0.46 3.41 16 6 N -0.48 -12.74 4.92 -906.77 -4.46 -17.20 16 7 C 0.00 -0.08 7.71 83.57 0.64 0.56 16 8 C -0.12 -1.88 8.00 30.93 0.25 -1.63 16 9 C 0.01 0.26 3.35 42.18 0.14 0.40 16 10 H 0.10 1.36 7.91 -2.39 -0.02 1.34 16 11 C 0.13 3.00 5.58 86.38 0.48 3.48 16 12 N -0.62 -17.57 2.63 -846.75 -2.22 -19.80 16 13 C 0.08 1.54 10.24 127.77 1.31 2.84 16 14 C 0.54 22.30 7.17 87.65 0.63 22.93 16 15 O -0.54 -26.67 14.87 -3.04 -0.05 -26.72 16 16 C -0.12 -5.28 4.71 71.23 0.34 -4.95 16 17 S -0.11 -6.37 20.57 -56.49 -1.16 -7.53 16 18 C -0.54 -32.19 9.50 67.95 0.65 -31.54 16 19 H 0.07 3.78 7.80 -2.91 -0.02 3.75 16 20 C 0.02 1.35 5.49 84.86 0.47 1.82 16 21 N -0.90 -55.50 13.22 21.65 0.29 -55.22 16 22 Si 0.98 44.77 29.55 68.60 2.03 46.80 16 23 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 24 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 25 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 26 C -0.08 -2.20 12.08 66.93 0.81 -1.39 16 27 O -0.21 -7.11 10.78 -3.71 -0.04 -7.15 16 28 H 0.11 3.03 8.14 -2.39 -0.02 3.01 16 29 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 30 H 0.07 3.19 8.14 -2.39 -0.02 3.17 16 31 H 0.07 1.94 7.89 -2.39 -0.02 1.92 16 32 H 0.09 1.57 7.30 -2.39 -0.02 1.55 16 33 H 0.09 1.16 7.42 -2.39 -0.02 1.15 16 34 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 35 H 0.08 1.52 7.94 -2.38 -0.02 1.50 16 36 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.11 1.62 8.07 -2.39 -0.02 1.60 16 38 H 0.06 1.67 7.15 -2.39 -0.02 1.65 16 39 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.06 1.34 6.44 -2.39 -0.02 1.32 16 41 H 0.10 1.27 8.07 -2.38 -0.02 1.25 16 42 H 0.08 3.64 7.40 -2.40 -0.02 3.62 16 43 H 0.08 3.54 8.11 -2.40 -0.02 3.52 16 44 H 0.27 15.27 8.31 -92.71 -0.77 14.49 16 45 H 0.25 4.01 8.06 -2.91 -0.02 3.99 16 Total: -1.00 -85.76 390.62 0.00 -85.76 By element: Atomic # 1 Polarization: 21.20 SS G_CDS: 0.99 Total: 22.19 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: 7.93 Total: 2.19 kcal Atomic # 7 Polarization: -105.85 SS G_CDS: -9.69 Total: -115.54 kcal Atomic # 8 Polarization: -33.78 SS G_CDS: -0.09 Total: -33.86 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Atomic # 16 Polarization: -6.37 SS G_CDS: -1.16 Total: -7.53 kcal Total: -85.76 0.00 -85.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230815940.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.239 kcal (2) G-P(sol) polarization free energy of solvation -85.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds