Wall clock time and date at job start Tue Mar 31 2020 23:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30255 * 125.61725 * 2 1 4 4 C 1.34471 * 108.70244 * 180.02562 * 3 2 1 5 5 C 1.34329 * 107.66875 * 0.02562 * 4 3 2 6 6 C 1.50696 * 126.44297 * 180.02562 * 5 4 3 7 7 N 1.46905 * 109.47486 * 89.99822 * 6 5 4 8 8 C 1.46901 * 111.00126 * 179.97438 * 7 6 5 9 9 H 1.08999 * 112.90571 * 23.75023 * 8 7 6 10 10 C 1.53777 * 113.61267 * 155.00020 * 8 7 6 11 11 C 1.53779 * 87.08324 * 89.11504 * 10 8 7 12 12 H 1.08999 * 113.61796 * 270.79881 * 11 10 8 13 13 C 1.53003 * 113.61280 * 139.97605 * 11 10 8 14 14 N 1.46499 * 109.46708 * 176.53052 * 13 11 10 15 15 C 1.34784 * 119.99893 * 180.02562 * 14 13 11 16 16 O 1.21283 * 119.99649 * 0.02562 * 15 14 13 17 17 C 1.50697 * 119.99774 * 179.72962 * 15 14 13 18 18 S 1.81008 * 109.46759 * 180.02562 * 17 15 14 19 19 C 1.76198 * 99.99946 * 179.97438 * 18 17 15 20 20 H 1.08000 * 119.99996 * 359.97438 * 19 18 17 21 21 C 1.38798 * 120.00252 * 179.97438 * 19 18 17 22 22 N 1.31626 * 120.00327 * 180.02562 * 21 19 18 23 23 Si 1.86795 * 119.99735 * 0.02562 * 21 19 18 24 24 H 1.48503 * 109.47351 * 90.00094 * 23 21 19 25 25 H 1.48496 * 109.47299 * 210.00069 * 23 21 19 26 26 H 1.48507 * 109.47281 * 330.00181 * 23 21 19 27 27 C 1.53782 * 87.17179 * 25.39139 * 11 10 8 28 28 O 1.33967 * 125.62345 * 180.33410 * 2 1 3 29 29 H 1.09000 * 109.47196 * 89.97679 * 1 2 3 30 30 H 1.09005 * 109.46531 * 209.97181 * 1 2 3 31 31 H 1.08993 * 109.47443 * 329.97328 * 1 2 3 32 32 H 1.08006 * 126.16379 * 180.02562 * 4 3 2 33 33 H 1.09003 * 109.47463 * 329.99835 * 6 5 4 34 34 H 1.09004 * 109.47086 * 209.99740 * 6 5 4 35 35 H 1.00903 * 110.99585 * 56.04791 * 7 6 5 36 36 H 1.09007 * 113.61722 * 334.56594 * 10 8 7 37 37 H 1.08999 * 113.69230 * 203.67785 * 10 8 7 38 38 H 1.08998 * 109.46692 * 56.53554 * 13 11 10 39 39 H 1.08994 * 109.47584 * 296.53418 * 13 11 10 40 40 H 0.97005 * 120.00261 * 0.02562 * 14 13 11 41 41 H 1.09001 * 109.46809 * 299.99238 * 17 15 14 42 42 H 1.08993 * 109.47525 * 59.99679 * 17 15 14 43 43 H 0.97000 * 120.00223 * 180.02562 * 22 21 19 44 44 H 1.09000 * 113.61464 * 89.15380 * 27 11 10 45 45 H 1.08999 * 113.61337 * 220.06200 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0589 0.0000 4 6 3.5521 0.6676 -0.0006 5 6 3.5698 -0.6755 -0.0015 6 6 4.7937 -1.5547 -0.0018 7 7 5.1913 -1.8413 1.3830 8 6 6.3836 -2.6985 1.4218 9 1 6.9840 -2.6316 0.5146 10 6 7.2034 -2.5553 2.7150 11 6 6.3197 -3.6668 3.3052 12 1 5.4182 -3.2955 3.7926 13 6 7.0901 -4.6702 4.1659 14 7 6.1536 -5.6356 4.7466 15 6 6.6099 -6.6194 5.5471 16 8 7.7957 -6.7050 5.7868 17 6 5.6459 -7.6087 6.1493 18 16 6.5573 -8.7958 7.1675 19 6 5.2251 -9.8020 7.7307 20 1 4.2139 -9.5815 7.4222 21 6 5.4752 -10.8781 8.5710 22 7 4.4800 -11.6301 8.9914 23 14 7.2241 -11.2591 9.1052 24 1 7.5287 -10.5271 10.3609 25 1 7.3639 -12.7192 9.3371 26 1 8.1701 -10.8339 8.0424 27 6 6.0876 -4.1439 1.8618 28 8 2.2873 -1.0889 -0.0063 29 1 -0.3633 0.0004 -1.0277 30 1 -0.3632 -0.8903 0.5134 31 1 -0.3634 0.8897 0.5142 32 1 4.4156 1.3164 -0.0003 33 1 5.6082 -1.0435 -0.5152 34 1 4.5697 -2.4892 -0.5164 35 1 4.4303 -2.2573 1.8989 36 1 7.0783 -1.5906 3.2068 37 1 8.2493 -2.8415 2.6044 38 1 7.6082 -4.1406 4.9653 39 1 7.8174 -5.1962 3.5476 40 1 5.2052 -5.5668 4.5552 41 1 4.9221 -7.0795 6.7691 42 1 5.1237 -8.1384 5.3526 43 1 4.6548 -12.3819 9.5789 44 1 6.8277 -4.8657 1.5162 45 1 5.0630 -4.4598 1.6658 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263855695.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:39 Heat of formation + Delta-G solvation = 2.989421 kcal Electronic energy + Delta-G solvation = -25197.994138 eV Core-core repulsion = 21343.966854 eV Total energy + Delta-G solvation = -3854.027284 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.75776 -40.21085 -38.95579 -35.67977 -35.18174 -34.06112 -32.44588 -32.27880 -30.13448 -28.87593 -26.94488 -26.07025 -25.60527 -24.84774 -22.79041 -22.60742 -21.42190 -20.57047 -19.43251 -17.91121 -17.47459 -17.26434 -16.61842 -16.35458 -16.12605 -15.64560 -15.37046 -15.12466 -14.94733 -14.70145 -14.35998 -13.91421 -13.84321 -13.56687 -13.49335 -13.32005 -13.23321 -13.03148 -12.84907 -12.80075 -12.67439 -12.31527 -11.84790 -11.69407 -11.28301 -11.21837 -11.01381 -10.98313 -10.87093 -10.65552 -10.53105 -9.85814 -9.50618 -9.25451 -9.02244 -8.98876 -8.93333 -8.50548 -6.92349 -6.29516 -4.01248 0.94153 2.14211 2.25532 2.76935 2.98351 3.30679 3.34189 3.50150 3.50546 3.64692 3.66553 4.09147 4.20724 4.22376 4.32724 4.39862 4.44568 4.58273 4.63945 4.74680 4.81858 4.84478 4.98447 5.01029 5.07505 5.08515 5.09559 5.27893 5.33739 5.40623 5.42249 5.45374 5.53263 5.64494 5.69172 5.75078 5.82456 5.89729 5.96420 6.00965 6.40689 6.54985 6.69820 7.29505 7.61806 7.93511 8.40888 8.49913 9.16697 10.79690 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018517 B = 0.001628 C = 0.001518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.774089 B =17193.714054 C =18437.827862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.192 3.808 3 N -0.487 5.487 4 C -0.015 4.015 5 C -0.054 4.054 6 C 0.148 3.852 7 N -0.666 5.666 8 C 0.064 3.936 9 H 0.089 0.911 10 C -0.119 4.119 11 C -0.121 4.121 12 H 0.096 0.904 13 C 0.131 3.869 14 N -0.736 5.736 15 C 0.529 3.471 16 O -0.521 6.521 17 C -0.124 4.124 18 S -0.142 6.142 19 C -0.522 4.522 20 H 0.088 0.912 21 C 0.095 3.905 22 N -0.880 5.880 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 C -0.163 4.163 28 O -0.203 6.203 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.102 0.898 32 H 0.184 0.816 33 H 0.108 0.892 34 H 0.052 0.948 35 H 0.348 0.652 36 H 0.080 0.920 37 H 0.090 0.910 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.398 0.602 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.271 0.729 44 H 0.091 0.909 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.481 24.723 -22.315 33.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.015 4.015 3 N -0.217 5.217 4 C -0.155 4.155 5 C -0.107 4.107 6 C 0.019 3.981 7 N -0.298 5.298 8 C -0.046 4.046 9 H 0.107 0.893 10 C -0.158 4.158 11 C -0.140 4.140 12 H 0.114 0.886 13 C 0.007 3.993 14 N -0.390 5.390 15 C 0.315 3.685 16 O -0.396 6.396 17 C -0.275 4.275 18 S 0.084 5.916 19 C -0.669 4.669 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.517 5.517 23 Si 0.682 3.318 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 C -0.202 4.202 28 O -0.090 6.090 29 H 0.111 0.889 30 H 0.108 0.892 31 H 0.120 0.880 32 H 0.202 0.798 33 H 0.126 0.874 34 H 0.071 0.929 35 H 0.168 0.832 36 H 0.099 0.901 37 H 0.108 0.892 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.232 0.768 41 H 0.115 0.885 42 H 0.114 0.886 43 H 0.081 0.919 44 H 0.110 0.890 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.455 25.570 -21.752 33.602 hybrid contribution -1.403 -1.742 -0.182 2.244 sum -2.858 23.828 -21.935 32.513 Atomic orbital electron populations 1.20290 0.81227 1.05336 1.04756 1.26356 0.96512 0.78616 0.99980 1.70487 1.02210 1.30291 1.18721 1.23077 0.94976 0.92941 1.04460 1.23229 0.83261 0.95553 1.08619 1.20307 0.89909 0.96701 0.91135 1.60420 1.08215 1.49246 1.11884 1.22633 0.92217 0.90765 0.99015 0.89306 1.23014 0.98366 0.98931 0.95460 1.22799 0.99955 0.96487 0.94762 0.88615 1.21294 0.91978 0.89433 0.96553 1.45963 1.10992 1.30782 1.51261 1.20285 0.89383 0.80946 0.77890 1.90698 1.16932 1.72783 1.59144 1.23279 1.01446 0.99575 1.03181 1.84788 1.14563 1.31911 1.60329 1.22320 0.94098 1.15565 1.34950 0.89408 1.24714 0.97723 0.94513 0.94370 1.69936 1.31291 1.17440 1.33026 0.86729 0.85201 0.78496 0.81388 1.19199 1.19936 1.15936 1.23789 1.02424 0.97449 0.96527 1.84382 1.16735 1.37953 1.69957 0.88870 0.89211 0.87969 0.79848 0.87412 0.92949 0.83224 0.90129 0.89164 0.91499 0.91545 0.76805 0.88543 0.88559 0.91943 0.89017 0.91427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.22 10.51 36.01 0.38 0.16 16 2 C 0.19 1.56 8.34 -12.95 -0.11 1.45 16 3 N -0.49 -4.79 11.29 -11.10 -0.13 -4.91 16 4 C -0.02 -0.13 11.80 -17.78 -0.21 -0.34 16 5 C -0.05 -0.41 6.90 -35.69 -0.25 -0.66 16 6 C 0.15 0.79 6.08 -4.97 -0.03 0.76 16 7 N -0.67 -3.92 6.55 -107.03 -0.70 -4.62 16 8 C 0.06 0.35 4.28 -66.81 -0.29 0.06 16 9 H 0.09 0.41 7.87 -51.93 -0.41 0.00 16 10 C -0.12 -0.74 7.44 -25.92 -0.19 -0.93 16 11 C -0.12 -0.86 3.51 -89.81 -0.32 -1.17 16 12 H 0.10 0.67 8.08 -51.93 -0.42 0.25 16 13 C 0.13 1.38 5.50 -4.04 -0.02 1.35 16 14 N -0.74 -9.10 5.56 -60.30 -0.33 -9.43 16 15 C 0.53 9.36 7.85 -10.98 -0.09 9.28 16 16 O -0.52 -11.28 15.86 5.56 0.09 -11.20 16 17 C -0.12 -2.40 6.16 36.00 0.22 -2.18 16 18 S -0.14 -3.62 18.55 -107.50 -1.99 -5.62 16 19 C -0.52 -15.07 10.04 30.94 0.31 -14.76 16 20 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 21 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 22 N -0.88 -26.58 13.97 55.49 0.78 -25.80 16 23 Si 0.86 21.84 27.74 -169.99 -4.71 17.12 16 24 H -0.27 -6.73 7.11 56.52 0.40 -6.32 16 25 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 26 H -0.24 -5.99 6.74 56.52 0.38 -5.61 16 27 C -0.16 -1.00 7.17 -25.83 -0.19 -1.18 16 28 O -0.20 -1.76 10.78 5.38 0.06 -1.71 16 29 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.09 0.23 8.14 -51.93 -0.42 -0.20 16 31 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.18 1.12 8.06 -52.48 -0.42 0.70 16 33 H 0.11 0.41 8.13 -51.93 -0.42 -0.01 16 34 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 35 H 0.35 2.20 8.10 -39.29 -0.32 1.88 16 36 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.09 0.53 8.10 -51.93 -0.42 0.11 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.07 0.75 7.87 -51.93 -0.41 0.34 16 40 H 0.40 3.83 8.47 -40.82 -0.35 3.49 16 41 H 0.10 1.74 8.14 -51.91 -0.42 1.31 16 42 H 0.10 1.73 8.14 -51.92 -0.42 1.30 16 43 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 44 H 0.09 0.61 7.92 -51.93 -0.41 0.20 16 45 H 0.07 0.41 8.07 -51.93 -0.42 0.00 16 LS Contribution 394.47 15.07 5.94 5.94 Total: -1.00 -36.26 394.47 -8.83 -45.09 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -6.96 Total: 0.59 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: -0.87 Total: -5.46 kcal Atomic # 7 Polarization: -44.38 SS G_CDS: -0.39 Total: -44.77 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: 0.15 Total: -12.90 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.71 Total: 17.12 kcal Atomic # 16 Polarization: -3.62 SS G_CDS: -1.99 Total: -5.62 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -36.26 -8.83 -45.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263855695.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.080 kcal (2) G-P(sol) polarization free energy of solvation -36.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds