Wall clock time and date at job start Tue Mar 31 2020 23:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30255 * 125.61725 * 2 1 4 4 C 1.34471 * 108.70244 * 180.02562 * 3 2 1 5 5 C 1.34329 * 107.66875 * 0.02562 * 4 3 2 6 6 C 1.50696 * 126.44297 * 180.02562 * 5 4 3 7 7 N 1.46905 * 109.47486 * 89.99822 * 6 5 4 8 8 C 1.46901 * 111.00126 * 179.97438 * 7 6 5 9 9 H 1.08999 * 112.90571 * 23.75023 * 8 7 6 10 10 C 1.53777 * 113.61267 * 155.00020 * 8 7 6 11 11 C 1.53779 * 87.08324 * 89.11504 * 10 8 7 12 12 H 1.08999 * 113.61796 * 270.79881 * 11 10 8 13 13 C 1.53003 * 113.61280 * 139.97605 * 11 10 8 14 14 N 1.46499 * 109.46708 * 176.53052 * 13 11 10 15 15 C 1.34784 * 119.99893 * 180.02562 * 14 13 11 16 16 O 1.21283 * 119.99649 * 0.02562 * 15 14 13 17 17 C 1.50697 * 119.99774 * 179.72962 * 15 14 13 18 18 S 1.81008 * 109.46759 * 180.02562 * 17 15 14 19 19 C 1.76198 * 99.99946 * 179.97438 * 18 17 15 20 20 H 1.08000 * 119.99996 * 359.97438 * 19 18 17 21 21 C 1.38798 * 120.00252 * 179.97438 * 19 18 17 22 22 N 1.31626 * 120.00327 * 180.02562 * 21 19 18 23 23 Si 1.86795 * 119.99735 * 0.02562 * 21 19 18 24 24 H 1.48503 * 109.47351 * 90.00094 * 23 21 19 25 25 H 1.48496 * 109.47299 * 210.00069 * 23 21 19 26 26 H 1.48507 * 109.47281 * 330.00181 * 23 21 19 27 27 C 1.53782 * 87.17179 * 25.39139 * 11 10 8 28 28 O 1.33967 * 125.62345 * 180.33410 * 2 1 3 29 29 H 1.09000 * 109.47196 * 89.97679 * 1 2 3 30 30 H 1.09005 * 109.46531 * 209.97181 * 1 2 3 31 31 H 1.08993 * 109.47443 * 329.97328 * 1 2 3 32 32 H 1.08006 * 126.16379 * 180.02562 * 4 3 2 33 33 H 1.09003 * 109.47463 * 329.99835 * 6 5 4 34 34 H 1.09004 * 109.47086 * 209.99740 * 6 5 4 35 35 H 1.00903 * 110.99585 * 56.04791 * 7 6 5 36 36 H 1.09007 * 113.61722 * 334.56594 * 10 8 7 37 37 H 1.08999 * 113.69230 * 203.67785 * 10 8 7 38 38 H 1.08998 * 109.46692 * 56.53554 * 13 11 10 39 39 H 1.08994 * 109.47584 * 296.53418 * 13 11 10 40 40 H 0.97005 * 120.00261 * 0.02562 * 14 13 11 41 41 H 1.09001 * 109.46809 * 299.99238 * 17 15 14 42 42 H 1.08993 * 109.47525 * 59.99679 * 17 15 14 43 43 H 0.97000 * 120.00223 * 180.02562 * 22 21 19 44 44 H 1.09000 * 113.61464 * 89.15380 * 27 11 10 45 45 H 1.08999 * 113.61337 * 220.06200 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0589 0.0000 4 6 3.5521 0.6676 -0.0006 5 6 3.5698 -0.6755 -0.0015 6 6 4.7937 -1.5547 -0.0018 7 7 5.1913 -1.8413 1.3830 8 6 6.3836 -2.6985 1.4218 9 1 6.9840 -2.6316 0.5146 10 6 7.2034 -2.5553 2.7150 11 6 6.3197 -3.6668 3.3052 12 1 5.4182 -3.2955 3.7926 13 6 7.0901 -4.6702 4.1659 14 7 6.1536 -5.6356 4.7466 15 6 6.6099 -6.6194 5.5471 16 8 7.7957 -6.7050 5.7868 17 6 5.6459 -7.6087 6.1493 18 16 6.5573 -8.7958 7.1675 19 6 5.2251 -9.8020 7.7307 20 1 4.2139 -9.5815 7.4222 21 6 5.4752 -10.8781 8.5710 22 7 4.4800 -11.6301 8.9914 23 14 7.2241 -11.2591 9.1052 24 1 7.5287 -10.5271 10.3609 25 1 7.3639 -12.7192 9.3371 26 1 8.1701 -10.8339 8.0424 27 6 6.0876 -4.1439 1.8618 28 8 2.2873 -1.0889 -0.0063 29 1 -0.3633 0.0004 -1.0277 30 1 -0.3632 -0.8903 0.5134 31 1 -0.3634 0.8897 0.5142 32 1 4.4156 1.3164 -0.0003 33 1 5.6082 -1.0435 -0.5152 34 1 4.5697 -2.4892 -0.5164 35 1 4.4303 -2.2573 1.8989 36 1 7.0783 -1.5906 3.2068 37 1 8.2493 -2.8415 2.6044 38 1 7.6082 -4.1406 4.9653 39 1 7.8174 -5.1962 3.5476 40 1 5.2052 -5.5668 4.5552 41 1 4.9221 -7.0795 6.7691 42 1 5.1237 -8.1384 5.3526 43 1 4.6548 -12.3819 9.5789 44 1 6.8277 -4.8657 1.5162 45 1 5.0630 -4.4598 1.6658 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263855695.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:38 Heat of formation + Delta-G solvation = -25.753739 kcal Electronic energy + Delta-G solvation = -25199.240535 eV Core-core repulsion = 21343.966854 eV Total energy + Delta-G solvation = -3855.273681 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.32720 -40.99605 -40.08694 -36.38005 -35.78680 -35.03731 -34.67758 -32.76790 -31.41539 -29.51246 -27.99906 -27.63916 -26.56366 -25.35857 -23.37761 -23.23598 -21.98080 -21.85819 -20.18979 -19.71239 -18.09526 -17.87900 -17.77603 -17.47758 -17.09631 -16.74907 -16.66987 -16.26126 -15.73034 -15.59884 -15.39149 -14.94793 -14.89890 -14.74408 -14.45309 -14.05210 -14.00336 -13.76857 -13.54639 -13.40116 -13.34820 -13.31590 -13.14033 -13.01446 -12.75927 -12.64828 -12.31190 -11.89975 -11.80264 -11.59674 -11.42412 -11.20810 -11.17843 -10.88290 -10.54572 -10.11131 -9.76968 -9.43618 -9.00632 -8.52267 -6.23276 0.39106 0.98669 1.31030 1.46448 1.55825 1.56387 1.63895 1.68898 2.22870 2.27483 2.71425 2.85940 3.06330 3.21325 3.58029 3.64374 3.74420 3.81049 3.92072 3.97255 4.09237 4.21529 4.22602 4.33250 4.43366 4.45598 4.57339 4.62206 4.68251 4.69893 4.72970 4.82468 4.88748 4.93454 5.00503 5.05304 5.15613 5.23705 5.31410 5.38329 5.49771 5.69908 5.97973 6.10487 6.24454 6.47216 6.72401 6.92882 7.19635 8.60059 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018517 B = 0.001628 C = 0.001518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.774089 B =17193.714054 C =18437.827862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.185 3.815 3 N -0.522 5.522 4 C -0.033 4.033 5 C -0.056 4.056 6 C 0.152 3.848 7 N -0.671 5.671 8 C 0.073 3.927 9 H 0.103 0.897 10 C -0.117 4.117 11 C -0.115 4.115 12 H 0.101 0.899 13 C 0.131 3.869 14 N -0.710 5.710 15 C 0.533 3.467 16 O -0.565 6.565 17 C -0.112 4.112 18 S -0.177 6.177 19 C -0.530 4.530 20 H 0.062 0.938 21 C 0.046 3.954 22 N -0.916 5.916 23 Si 0.915 3.085 24 H -0.263 1.263 25 H -0.258 1.258 26 H -0.237 1.237 27 C -0.158 4.158 28 O -0.215 6.215 29 H 0.109 0.891 30 H 0.103 0.897 31 H 0.108 0.892 32 H 0.198 0.802 33 H 0.125 0.875 34 H 0.058 0.942 35 H 0.346 0.654 36 H 0.075 0.925 37 H 0.094 0.906 38 H 0.056 0.944 39 H 0.061 0.939 40 H 0.415 0.585 41 H 0.112 0.888 42 H 0.113 0.887 43 H 0.277 0.723 44 H 0.089 0.911 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.216 25.725 -23.638 35.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.021 4.021 3 N -0.252 5.252 4 C -0.172 4.172 5 C -0.109 4.109 6 C 0.024 3.976 7 N -0.302 5.302 8 C -0.037 4.037 9 H 0.121 0.879 10 C -0.155 4.155 11 C -0.134 4.134 12 H 0.119 0.881 13 C 0.008 3.992 14 N -0.364 5.364 15 C 0.318 3.682 16 O -0.444 6.444 17 C -0.263 4.263 18 S 0.050 5.950 19 C -0.677 4.677 20 H 0.080 0.920 21 C -0.160 4.160 22 N -0.554 5.554 23 Si 0.737 3.263 24 H -0.187 1.187 25 H -0.183 1.183 26 H -0.161 1.161 27 C -0.197 4.197 28 O -0.103 6.103 29 H 0.127 0.873 30 H 0.122 0.878 31 H 0.127 0.873 32 H 0.215 0.785 33 H 0.143 0.857 34 H 0.077 0.923 35 H 0.165 0.835 36 H 0.094 0.906 37 H 0.113 0.887 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.252 0.748 41 H 0.130 0.870 42 H 0.131 0.869 43 H 0.086 0.914 44 H 0.108 0.892 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.228 26.605 -23.108 35.261 hybrid contribution -1.593 -1.917 0.138 2.497 sum -2.822 24.688 -22.970 33.839 Atomic orbital electron populations 1.20519 0.78677 1.06316 1.06073 1.27188 0.97891 0.78189 0.98857 1.70482 1.03154 1.31391 1.20170 1.23412 0.95113 0.93703 1.04930 1.23627 0.83541 0.95729 1.08000 1.20413 0.89449 0.96765 0.90988 1.60410 1.08274 1.49329 1.12210 1.22560 0.91962 0.89979 0.99174 0.87877 1.23021 0.98626 0.98156 0.95734 1.22772 0.99946 0.95963 0.94676 0.88084 1.21451 0.91993 0.89314 0.96472 1.45771 1.12334 1.29168 1.49080 1.19973 0.88253 0.81551 0.78428 1.90687 1.18431 1.74120 1.61148 1.23276 1.01375 0.98719 1.02881 1.84714 1.14872 1.33467 1.61963 1.22464 0.94089 1.16279 1.34913 0.91956 1.25566 1.01476 0.94464 0.94485 1.70012 1.33284 1.18210 1.33917 0.85861 0.80500 0.79090 0.80878 1.18723 1.18267 1.16104 1.23756 1.02588 0.97918 0.95464 1.84391 1.17308 1.38380 1.70174 0.87269 0.87808 0.87330 0.78484 0.85718 0.92345 0.83529 0.90588 0.88713 0.92574 0.92040 0.74836 0.86961 0.86863 0.91354 0.89215 0.91079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.37 10.51 71.24 0.75 0.38 16 2 C 0.19 2.88 8.34 88.34 0.74 3.62 16 3 N -0.52 -10.08 11.29 -303.83 -3.43 -13.51 16 4 C -0.03 -0.53 11.80 83.40 0.98 0.46 16 5 C -0.06 -0.80 6.90 24.79 0.17 -0.63 16 6 C 0.15 1.30 6.08 85.55 0.52 1.82 16 7 N -0.67 -6.37 6.55 -492.53 -3.23 -9.60 16 8 C 0.07 0.60 4.28 45.50 0.19 0.79 16 9 H 0.10 0.61 7.87 -2.39 -0.02 0.59 16 10 C -0.12 -1.19 7.44 31.12 0.23 -0.96 16 11 C -0.11 -1.36 3.51 -10.27 -0.04 -1.40 16 12 H 0.10 1.15 8.08 -2.39 -0.02 1.13 16 13 C 0.13 2.52 5.50 86.38 0.47 3.00 16 14 N -0.71 -16.10 5.56 -463.06 -2.57 -18.67 16 15 C 0.53 18.12 7.85 87.65 0.69 18.81 16 16 O -0.57 -24.16 15.86 -3.04 -0.05 -24.21 16 17 C -0.11 -4.17 6.16 71.24 0.44 -3.73 16 18 S -0.18 -8.95 18.55 -56.49 -1.05 -9.99 16 19 C -0.53 -30.89 10.04 67.95 0.68 -30.21 16 20 H 0.06 3.82 8.03 -2.91 -0.02 3.80 16 21 C 0.05 2.68 5.50 84.86 0.47 3.14 16 22 N -0.92 -55.76 13.97 21.65 0.30 -55.46 16 23 Si 0.91 45.06 27.74 68.60 1.90 46.96 16 24 H -0.26 -12.63 7.11 99.48 0.71 -11.92 16 25 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 26 H -0.24 -11.67 6.74 99.48 0.67 -11.00 16 27 C -0.16 -1.53 7.17 31.18 0.22 -1.31 16 28 O -0.21 -3.54 10.78 -3.68 -0.04 -3.58 16 29 H 0.11 0.34 8.14 -2.39 -0.02 0.32 16 30 H 0.10 0.35 8.14 -2.38 -0.02 0.33 16 31 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.20 2.26 8.06 -2.91 -0.02 2.24 16 33 H 0.12 0.63 8.13 -2.39 -0.02 0.61 16 34 H 0.06 0.45 8.14 -2.38 -0.02 0.43 16 35 H 0.35 3.63 8.10 -89.69 -0.73 2.90 16 36 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 37 H 0.09 0.91 8.10 -2.39 -0.02 0.89 16 38 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.06 1.29 7.87 -2.39 -0.02 1.27 16 40 H 0.41 6.82 8.47 -92.70 -0.79 6.03 16 41 H 0.11 3.86 8.14 -2.40 -0.02 3.84 16 42 H 0.11 3.87 8.14 -2.40 -0.02 3.85 16 43 H 0.28 15.57 8.31 -92.71 -0.77 14.80 16 44 H 0.09 0.96 7.92 -2.39 -0.02 0.94 16 45 H 0.07 0.67 8.07 -2.39 -0.02 0.65 16 Total: -1.00 -79.01 394.47 -2.17 -81.19 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -0.54 Total: 13.10 kcal Atomic # 6 Polarization: -12.74 SS G_CDS: 6.53 Total: -6.22 kcal Atomic # 7 Polarization: -88.32 SS G_CDS: -8.93 Total: -97.25 kcal Atomic # 8 Polarization: -27.70 SS G_CDS: -0.09 Total: -27.79 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 1.90 Total: 46.96 kcal Atomic # 16 Polarization: -8.95 SS G_CDS: -1.05 Total: -9.99 kcal Total: -79.01 -2.17 -81.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263855695.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.431 kcal (2) G-P(sol) polarization free energy of solvation -79.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds