Wall clock time and date at job start Tue Mar 31 2020 22:57:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50696 * 1
3 3 N 1.34476 * 126.16752 * 2 1
4 4 C 1.30259 * 108.70075 * 180.16769 * 3 2 1
5 5 C 1.50697 * 125.62056 * 179.84007 * 4 3 2
6 6 N 1.46905 * 109.47069 * 89.69664 * 5 4 3
7 7 C 1.46897 * 110.99869 * 180.02562 * 6 5 4
8 8 H 1.09008 * 112.90832 * 336.24767 * 7 6 5
9 9 C 1.53776 * 113.61587 * 107.50427 * 7 6 5
10 10 C 1.53785 * 87.08294 * 139.98005 * 9 7 6
11 11 H 1.08999 * 113.68976 * 220.00640 * 10 9 7
12 12 N 1.46500 * 113.61546 * 89.11216 * 10 9 7
13 13 C 1.34776 * 119.99472 * 107.50485 * 12 10 9
14 14 O 1.21280 * 120.00458 * 359.97438 * 13 12 10
15 15 C 1.50702 * 119.99564 * 180.02562 * 13 12 10
16 16 S 1.81008 * 109.46925 * 180.02562 * 15 13 12
17 17 C 1.76202 * 99.99767 * 179.97438 * 16 15 13
18 18 H 1.07996 * 120.00286 * 0.02562 * 17 16 15
19 19 C 1.38802 * 119.99642 * 180.02562 * 17 16 15
20 20 N 1.31625 * 120.00322 * 359.97438 * 19 17 16
21 21 Si 1.86798 * 119.99881 * 180.02562 * 19 17 16
22 22 H 1.48506 * 109.47297 * 359.97438 * 21 19 17
23 23 H 1.48503 * 109.47261 * 239.99700 * 21 19 17
24 24 H 1.48500 * 109.47454 * 119.99693 * 21 19 17
25 25 C 1.53780 * 87.07947 * 334.56763 * 10 9 7
26 26 O 1.33965 * 108.75875 * 359.58144 * 4 3 2
27 27 C 1.34330 * 126.16250 * 179.70880 * 2 1 3
28 28 C 1.50699 * 126.44587 * 0.02562 * 27 2 1
29 29 H 1.09006 * 109.46950 * 270.29472 * 1 2 3
30 30 H 1.09002 * 109.47467 * 30.29451 * 1 2 3
31 31 H 1.09004 * 109.47606 * 150.29439 * 1 2 3
32 32 H 1.09004 * 109.47121 * 329.70244 * 5 4 3
33 33 H 1.08999 * 109.47259 * 209.69760 * 5 4 3
34 34 H 1.00900 * 110.99994 * 303.95573 * 6 5 4
35 35 H 1.08998 * 113.61459 * 25.42915 * 9 7 6
36 36 H 1.09006 * 113.61321 * 254.52766 * 9 7 6
37 37 H 0.96999 * 120.00150 * 287.51113 * 12 10 9
38 38 H 1.08998 * 109.47573 * 60.00437 * 15 13 12
39 39 H 1.09000 * 109.46955 * 299.99406 * 15 13 12
40 40 H 0.97004 * 120.00251 * 0.02562 * 20 19 17
41 41 H 1.08995 * 113.61658 * 139.98103 * 25 10 9
42 42 H 1.09006 * 113.61353 * 270.88515 * 25 10 9
43 43 H 1.08999 * 109.47674 * 180.02562 * 28 27 2
44 44 H 1.08995 * 109.47334 * 300.00422 * 28 27 2
45 45 H 1.09000 * 109.47055 * 60.00458 * 28 27 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.3006 1.0856 0.0000
4 6 3.5431 0.6946 -0.0036
5 6 4.7480 1.5997 -0.0083
6 7 5.1395 1.9010 1.3752
7 6 6.3132 2.7836 1.4098
8 1 6.9148 2.7254 0.5026
9 6 5.9890 4.2231 1.8426
10 6 7.2981 4.1920 2.6489
11 1 7.2237 4.6740 3.6237
12 7 8.4685 4.6313 1.8849
13 6 9.0321 5.8277 2.1442
14 8 8.5703 6.5409 3.0097
15 6 10.2357 6.2799 1.3580
16 16 10.7553 7.9142 1.9368
17 6 12.1373 8.1884 0.8788
18 1 12.4173 7.4408 0.1515
19 6 12.8661 9.3653 0.9800
20 7 12.5246 10.2768 1.8661
21 14 14.3309 9.6563 -0.1421
22 1 14.5044 8.4883 -1.0427
23 1 15.5556 9.8342 0.6786
24 1 14.0975 10.8776 -0.9541
25 6 7.1363 2.6637 2.7033
26 8 3.5733 -0.6446 0.0033
27 6 2.2996 -1.0845 0.0055
28 6 1.8492 -2.5226 0.0123
29 1 -0.3633 0.0053 1.0277
30 1 -0.3634 0.8873 -0.5184
31 1 -0.3634 -0.8926 -0.5093
32 1 4.5039 2.5269 -0.5269
33 1 5.5730 1.1038 -0.5196
34 1 4.3700 2.3028 1.8894
35 1 5.0960 4.3020 2.4627
36 1 5.9993 4.9390 1.0206
37 1 8.8376 4.0611 1.1924
38 1 9.9794 6.3334 0.2999
39 1 11.0499 5.5691 1.4992
40 1 11.7638 10.1259 2.4486
41 1 8.0727 2.1206 2.5762
42 1 6.5569 2.3162 3.5588
43 1 2.7212 -3.1765 0.0162
44 1 1.2499 -2.7114 0.9029
45 1 1.2506 -2.7200 -0.8770
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001265467892.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:57:54
Heat of formation + Delta-G solvation = -33.342576 kcal
Electronic energy + Delta-G solvation = -25303.955144 eV
Core-core repulsion = 21448.352387 eV
Total energy + Delta-G solvation = -3855.602757 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 0.73 seconds
Orbital eigenvalues (eV)
-44.37492 -41.33515 -39.60167 -36.37719 -36.17430 -34.75114 -34.35405 -33.29684
-30.79043 -30.09049 -28.52811 -27.08867 -26.69364 -25.36321 -24.13474 -22.69489
-22.25104 -21.67507 -20.56023 -20.40589 -18.23040 -17.90749 -17.75150 -17.36911
-16.66674 -16.59325 -16.42504 -16.04168 -15.74049 -15.66871 -15.10669 -14.90724
-14.71411 -14.47822 -14.27228 -14.10812 -14.07144 -13.89310 -13.80223 -13.57221
-13.41094 -13.31719 -13.23382 -12.94309 -12.75931 -12.64824 -12.00456 -11.92510
-11.83674 -11.56865 -11.55812 -11.40973 -11.11679 -11.07261 -10.32028 -10.15348
-9.63879 -9.44290 -8.92680 -8.86946 -6.27814 0.36555 1.19533 1.49207
1.52060 1.52169 1.62230 1.67816 1.78470 2.15300 2.34302 2.85518
3.02609 3.13350 3.18651 3.49864 3.63085 3.75941 3.79992 3.86611
3.91306 3.99571 4.16562 4.18189 4.27906 4.37871 4.41326 4.54961
4.60901 4.63458 4.74196 4.75814 4.80652 4.82584 4.87802 4.97984
5.01264 5.06426 5.08513 5.16740 5.40350 5.48424 5.65171 5.86787
6.14520 6.14974 6.43426 6.70431 7.06255 7.16558 8.50927
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.029446 B = 0.001508 C = 0.001486
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 950.668201 B =18564.929828 C =18835.130150
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.068 4.068
2 C -0.044 4.044
3 N -0.504 5.504
4 C 0.184 3.816
5 C 0.157 3.843
6 N -0.674 5.674
7 C 0.081 3.919
8 H 0.118 0.882
9 C -0.176 4.176
10 C 0.110 3.890
11 H 0.080 0.920
12 N -0.692 5.692
13 C 0.536 3.464
14 O -0.566 6.566
15 C -0.109 4.109
16 S -0.198 6.198
17 C -0.613 4.613
18 H 0.076 0.924
19 C -0.019 4.019
20 N -0.914 5.914
21 Si 1.142 2.858
22 H -0.262 1.262
23 H -0.275 1.275
24 H -0.275 1.275
25 C -0.116 4.116
26 O -0.207 6.207
27 C -0.054 4.054
28 C -0.066 4.066
29 H 0.081 0.919
30 H 0.068 0.932
31 H 0.099 0.901
32 H 0.082 0.918
33 H 0.118 0.882
34 H 0.350 0.650
35 H 0.097 0.903
36 H 0.064 0.936
37 H 0.418 0.582
38 H 0.113 0.887
39 H 0.113 0.887
40 H 0.261 0.739
41 H 0.088 0.912
42 H 0.104 0.896
43 H 0.082 0.918
44 H 0.105 0.895
45 H 0.107 0.893
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -22.024 -30.309 -6.711 38.062
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.125 4.125
2 C -0.163 4.163
3 N -0.235 5.235
4 C -0.023 4.023
5 C 0.028 3.972
6 N -0.306 5.306
7 C -0.029 4.029
8 H 0.136 0.864
9 C -0.216 4.216
10 C 0.004 3.996
11 H 0.098 0.902
12 N -0.345 5.345
13 C 0.321 3.679
14 O -0.444 6.444
15 C -0.261 4.261
16 S 0.029 5.971
17 C -0.761 4.761
18 H 0.094 0.906
19 C -0.222 4.222
20 N -0.550 5.550
21 Si 0.960 3.040
22 H -0.186 1.186
23 H -0.200 1.200
24 H -0.201 1.201
25 C -0.155 4.155
26 O -0.094 6.094
27 C -0.107 4.107
28 C -0.123 4.123
29 H 0.100 0.900
30 H 0.087 0.913
31 H 0.117 0.883
32 H 0.100 0.900
33 H 0.136 0.864
34 H 0.169 0.831
35 H 0.116 0.884
36 H 0.082 0.918
37 H 0.255 0.745
38 H 0.131 0.869
39 H 0.132 0.868
40 H 0.072 0.928
41 H 0.107 0.893
42 H 0.122 0.878
43 H 0.101 0.899
44 H 0.123 0.877
45 H 0.126 0.874
Dipole moment (debyes) X Y Z Total
from point charges -21.426 -28.083 -5.572 35.761
hybrid contribution -0.729 -1.343 -0.828 1.738
sum -22.155 -29.427 -6.400 37.387
Atomic orbital electron populations
1.20201 0.84539 1.04178 1.03564 1.22089 0.99418 0.87559 1.07244
1.70332 1.01402 1.32855 1.18938 1.26372 0.95388 0.79492 1.01097
1.20374 0.90090 0.94734 0.92048 1.60452 1.09342 1.49060 1.11780
1.23101 0.91968 0.88445 0.99350 0.86411 1.24156 0.98019 0.98752
1.00674 1.21786 0.85077 0.97246 0.95493 0.90224 1.45381 1.30953
1.18207 1.39976 1.20032 0.83642 0.81640 0.82548 1.90696 1.64284
1.55157 1.34230 1.23230 0.99097 1.00144 1.03622 1.85092 1.39068
1.20213 1.52750 1.24092 1.16885 1.10340 1.24741 0.90602 1.27826
1.04196 0.91073 0.99117 1.70860 1.27652 1.36135 1.20327 0.82648
0.70991 0.76883 0.73501 1.18632 1.20039 1.20065 1.23367 1.01032
0.92225 0.98885 1.84405 1.31047 1.24185 1.69733 1.24037 0.80138
0.99978 1.06526 1.20492 1.02566 0.83719 1.05474 0.90030 0.91342
0.88275 0.90006 0.86398 0.83061 0.88450 0.91759 0.74459 0.86888
0.86842 0.92821 0.89297 0.87794 0.89872 0.87668 0.87416
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.69 10.22 71.23 0.73 0.04 16
2 C -0.04 -0.76 7.11 41.26 0.29 -0.47 16
3 N -0.50 -10.90 11.29 -291.99 -3.30 -14.20 16
4 C 0.18 3.49 7.86 88.34 0.69 4.18 16
5 C 0.16 2.09 6.15 85.56 0.53 2.62 16
6 N -0.67 -9.11 6.61 -492.84 -3.26 -12.37 16
7 C 0.08 1.01 4.06 45.44 0.18 1.19 16
8 H 0.12 1.13 7.87 -2.38 -0.02 1.11 16
9 C -0.18 -2.99 7.49 31.12 0.23 -2.76 16
10 C 0.11 2.29 4.32 45.52 0.20 2.48 16
11 H 0.08 2.12 7.46 -2.39 -0.02 2.11 16
12 N -0.69 -16.07 5.26 -440.03 -2.32 -18.39 16
13 C 0.54 19.09 7.85 87.66 0.69 19.77 16
14 O -0.57 -25.82 15.46 -3.03 -0.05 -25.87 16
15 C -0.11 -4.22 6.16 71.24 0.44 -3.79 16
16 S -0.20 -10.86 19.60 -56.49 -1.11 -11.97 16
17 C -0.61 -35.23 9.50 67.95 0.65 -34.58 16
18 H 0.08 4.08 7.80 -2.91 -0.02 4.06 16
19 C -0.02 -1.10 5.49 84.86 0.47 -0.64 16
20 N -0.91 -58.18 13.67 21.65 0.30 -57.88 16
21 Si 1.14 49.33 29.92 68.60 2.05 51.38 16
22 H -0.26 -10.10 7.11 99.48 0.71 -9.40 16
23 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16
24 H -0.28 -11.48 7.11 99.48 0.71 -10.77 16
25 C -0.12 -1.61 7.63 31.12 0.24 -1.37 16
26 O -0.21 -4.01 10.77 -3.71 -0.04 -4.05 16
27 C -0.05 -0.83 7.39 24.79 0.18 -0.65 16
28 C -0.07 -0.38 9.96 71.24 0.71 0.33 16
29 H 0.08 0.70 8.14 -2.38 -0.02 0.68 16
30 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16
31 H 0.10 0.46 7.89 -2.38 -0.02 0.44 16
32 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16
33 H 0.12 1.17 8.13 -2.39 -0.02 1.15 16
34 H 0.35 5.12 8.18 -89.69 -0.73 4.39 16
35 H 0.10 1.58 7.82 -2.39 -0.02 1.56 16
36 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16
37 H 0.42 6.61 8.70 -92.71 -0.81 5.80 16
38 H 0.11 3.91 8.14 -2.40 -0.02 3.89 16
39 H 0.11 3.93 8.14 -2.40 -0.02 3.91 16
40 H 0.26 17.28 7.13 -92.70 -0.66 16.62 16
41 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16
42 H 0.10 1.40 8.14 -2.38 -0.02 1.38 16
43 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16
44 H 0.10 0.27 8.14 -2.39 -0.02 0.25 16
45 H 0.11 0.20 8.14 -2.39 -0.02 0.18 16
Total: -1.00 -83.99 395.63 -1.90 -85.89
By element:
Atomic # 1 Polarization: 21.49 SS G_CDS: -0.41 Total: 21.08 kcal
Atomic # 6 Polarization: -19.86 SS G_CDS: 6.22 Total: -13.64 kcal
Atomic # 7 Polarization: -94.26 SS G_CDS: -8.57 Total: -102.84 kcal
Atomic # 8 Polarization: -29.83 SS G_CDS: -0.09 Total: -29.92 kcal
Atomic # 14 Polarization: 49.33 SS G_CDS: 2.05 Total: 51.38 kcal
Atomic # 16 Polarization: -10.86 SS G_CDS: -1.11 Total: -11.97 kcal
Total: -83.99 -1.90 -85.89 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001265467892.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 52.549 kcal
(2) G-P(sol) polarization free energy of solvation -83.989 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.439 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.903 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.892 kcal
(6) G-S(sol) free energy of system = (1) + (5) -33.343 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.73 seconds