Wall clock time and date at job start Tue Mar 31 2020 23:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50695 * 109.46936 * 2 1 4 4 O 1.34042 * 126.77640 * 269.99289 * 3 2 1 5 5 N 1.20923 * 111.57059 * 180.02562 * 4 3 2 6 6 C 1.30171 * 111.60048 * 359.74287 * 5 4 3 7 7 C 1.50704 * 126.80087 * 180.24977 * 6 5 4 8 8 C 1.35449 * 126.77996 * 90.00437 * 3 2 1 9 9 C 1.50701 * 128.00589 * 359.95204 * 8 3 2 10 10 N 1.46906 * 109.46965 * 90.00688 * 9 8 3 11 11 C 1.47475 * 110.99695 * 265.97352 * 10 9 8 12 12 C 1.53521 * 87.93048 * 221.29471 * 11 10 9 13 13 N 1.46497 * 114.16631 * 272.37660 * 12 11 10 14 14 C 1.34783 * 119.99888 * 248.83287 * 13 12 11 15 15 O 1.21274 * 119.99862 * 0.02562 * 14 13 12 16 16 C 1.50700 * 119.99603 * 180.02562 * 14 13 12 17 17 S 1.81003 * 109.46670 * 180.02562 * 16 14 13 18 18 C 1.76201 * 99.99956 * 180.02562 * 17 16 14 19 19 H 1.08003 * 119.99682 * 0.02562 * 18 17 16 20 20 C 1.38797 * 119.99933 * 179.97438 * 18 17 16 21 21 N 1.31627 * 120.00398 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99751 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47120 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.46893 * 120.00231 * 22 20 18 25 25 H 1.48500 * 109.46949 * 240.00228 * 22 20 18 26 26 C 1.47472 * 111.00187 * 169.99871 * 10 9 8 27 27 H 1.09003 * 109.47372 * 300.00483 * 1 2 3 28 28 H 1.09004 * 109.46828 * 60.00351 * 1 2 3 29 29 H 1.08999 * 109.47204 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46934 * 239.99804 * 2 1 3 31 31 H 1.09004 * 109.46828 * 119.99649 * 2 1 3 32 32 H 1.08990 * 109.47521 * 270.17131 * 7 6 5 33 33 H 1.09006 * 109.46947 * 30.17722 * 7 6 5 34 34 H 1.09006 * 109.46920 * 150.16841 * 7 6 5 35 35 H 1.08993 * 109.47133 * 330.00726 * 9 8 3 36 36 H 1.08996 * 109.47320 * 210.00466 * 9 8 3 37 37 H 1.09003 * 113.47854 * 336.05764 * 11 10 9 38 38 H 1.08998 * 113.48126 * 106.52852 * 11 10 9 39 39 H 1.08995 * 114.34304 * 139.68372 * 12 11 10 40 40 H 0.97001 * 120.00161 * 68.84474 * 13 12 11 41 41 H 1.08992 * 109.47553 * 300.00511 * 16 14 13 42 42 H 1.08998 * 109.47070 * 60.00799 * 16 14 13 43 43 H 0.96998 * 120.00472 * 179.97438 * 21 20 18 44 44 H 1.08998 * 113.48140 * 253.47102 * 26 10 9 45 45 H 1.09007 * 113.47537 * 23.93571 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2999 2.1773 -1.0736 5 7 2.6893 3.2774 -0.7565 6 6 2.7327 3.4158 0.5371 7 6 3.1598 4.6434 1.2998 8 6 2.3027 2.1854 1.0849 9 6 2.1700 1.8128 2.5391 10 7 3.4325 1.2294 3.0122 11 6 3.4060 -0.2416 2.9099 12 6 4.0978 -0.2937 4.2794 13 7 5.5603 -0.2384 4.2150 14 6 6.2908 -1.3219 4.5451 15 8 5.7374 -2.3427 4.8949 16 6 7.7953 -1.2647 4.4794 17 16 8.4821 -2.8635 4.9779 18 6 10.2028 -2.5219 4.8138 19 1 10.5309 -1.5462 4.4870 20 6 11.1367 -3.5064 5.1055 21 7 10.7369 -4.6954 5.5043 22 14 12.9611 -3.1440 4.9322 23 1 13.1461 -1.7442 4.4721 24 1 13.6287 -3.3250 6.2463 25 1 13.5586 -4.0745 3.9410 26 6 3.4252 1.0718 4.4784 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8901 32 1 4.2331 4.6011 1.4849 33 1 2.9266 5.5336 0.7156 34 1 2.6284 4.6835 2.2508 35 1 1.3672 1.0850 2.6559 36 1 1.9403 2.7040 3.1230 37 1 2.3992 -0.6592 2.9158 38 1 4.0200 -0.6316 2.0981 39 1 3.7254 -1.0754 4.9414 40 1 6.0029 0.5781 3.9351 41 1 8.1062 -1.0381 3.4597 42 1 8.1590 -0.4873 5.1513 43 1 11.3895 -5.3836 5.7078 44 1 4.0555 1.7949 4.9961 45 1 2.4235 1.0047 4.9030 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268244921.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:54 Heat of formation + Delta-G solvation = 53.616098 kcal Electronic energy + Delta-G solvation = -26466.661754 eV Core-core repulsion = 22614.829807 eV Total energy + Delta-G solvation = -3851.831946 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -45.15662 -40.81104 -38.61737 -35.86503 -34.89450 -33.64566 -32.43090 -31.36665 -29.77757 -28.98989 -28.36506 -26.33503 -25.53082 -25.03251 -24.08744 -21.75542 -20.92011 -20.24107 -19.83006 -17.94617 -17.83135 -17.28509 -16.64442 -16.34293 -15.86032 -15.47670 -15.30314 -14.90065 -14.80638 -14.66881 -14.27825 -13.91703 -13.66383 -13.51365 -13.30267 -13.20031 -13.11924 -12.84384 -12.75634 -12.52391 -12.31713 -12.03110 -11.86248 -11.74315 -11.57500 -11.08436 -11.07106 -11.05696 -11.02087 -10.75330 -10.09379 -9.80913 -9.53683 -9.46919 -9.23220 -9.08031 -8.91279 -8.24222 -6.50468 -6.22192 -3.92584 1.19098 1.92797 2.80902 2.96563 3.00703 3.21706 3.27558 3.32132 3.59755 3.77168 3.95826 4.10431 4.16063 4.20153 4.36648 4.51618 4.52836 4.71182 4.73005 4.81389 4.90060 5.07061 5.08443 5.10632 5.13273 5.17291 5.20108 5.23497 5.33842 5.36616 5.42646 5.45066 5.50256 5.58208 5.58913 5.70580 5.82786 5.87454 5.88796 5.89438 6.14619 6.54344 6.65557 7.59981 7.70514 8.05131 8.35394 8.57449 9.23547 10.85293 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016359 B = 0.002088 C = 0.002033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.232840 B =13409.236395 C =13770.411854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.049 4.049 3 C -0.020 4.020 4 O 0.096 5.904 5 N -0.370 5.370 6 C 0.033 3.967 7 C -0.073 4.073 8 C -0.185 4.185 9 C 0.097 3.903 10 N -0.463 5.463 11 C -0.021 4.021 12 C 0.126 3.874 13 N -0.712 5.712 14 C 0.535 3.465 15 O -0.517 6.517 16 C -0.153 4.153 17 S -0.060 6.060 18 C -0.534 4.534 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 C -0.012 4.012 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.071 0.929 30 H 0.090 0.910 31 H 0.096 0.904 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.060 0.940 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.091 0.909 39 H 0.113 0.887 40 H 0.404 0.596 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.268 0.732 44 H 0.093 0.907 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.556 15.866 -7.397 28.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.087 4.087 3 C -0.084 4.084 4 O 0.032 5.968 5 N -0.076 5.076 6 C -0.126 4.126 7 C -0.130 4.130 8 C -0.190 4.190 9 C -0.032 4.032 10 N -0.186 5.186 11 C -0.151 4.151 12 C 0.018 3.982 13 N -0.366 5.366 14 C 0.322 3.678 15 O -0.391 6.391 16 C -0.303 4.303 17 S 0.166 5.834 18 C -0.682 4.682 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 C -0.141 4.141 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.109 0.891 31 H 0.114 0.886 32 H 0.101 0.899 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.078 0.922 36 H 0.105 0.895 37 H 0.097 0.903 38 H 0.109 0.891 39 H 0.130 0.870 40 H 0.239 0.761 41 H 0.109 0.891 42 H 0.109 0.891 43 H 0.078 0.922 44 H 0.112 0.888 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -22.628 15.200 -8.134 28.447 hybrid contribution 1.213 1.193 0.258 1.721 sum -21.415 16.393 -7.877 28.096 Atomic orbital electron populations 1.21779 0.93397 1.02875 1.02644 1.20215 0.96654 0.86736 1.05081 1.24268 1.01647 0.96532 0.85963 1.84799 1.61470 1.17681 1.32835 1.73849 1.17873 0.99724 1.16201 1.23392 1.01379 0.97878 0.89949 1.20131 1.02409 0.91882 0.98582 1.20625 1.08090 0.93743 0.96510 1.20859 0.92150 1.00538 0.89614 1.68993 1.30839 1.10463 1.08297 1.24575 1.00871 0.89337 1.00332 1.21791 0.81864 0.97797 0.96737 1.45568 1.04733 1.15923 1.70348 1.20360 0.89229 0.82643 0.75566 1.90694 1.72857 1.30318 1.45263 1.23524 0.93313 1.08149 1.05361 1.85373 1.03116 1.07487 1.87398 1.22907 0.91099 1.01561 1.52677 0.90864 1.24993 0.99629 0.94452 0.94539 1.70023 1.34662 1.03142 1.42490 0.86117 0.82914 0.78492 0.77980 1.19608 1.20569 1.20561 1.24291 1.01118 0.97960 0.90752 0.92301 0.92024 0.91043 0.89107 0.88566 0.89864 0.90830 0.90315 0.92163 0.89510 0.90339 0.89086 0.86954 0.76084 0.89144 0.89136 0.92240 0.88824 0.90001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.89 37.16 0.37 -0.36 16 2 C -0.05 -0.31 6.30 -27.88 -0.18 -0.48 16 3 C -0.02 -0.18 6.74 -35.31 -0.24 -0.42 16 4 O 0.10 1.09 11.20 17.17 0.19 1.29 16 5 N -0.37 -4.55 12.07 33.42 0.40 -4.15 16 6 C 0.03 0.35 7.33 -82.10 -0.60 -0.26 16 7 C -0.07 -0.54 10.39 36.01 0.37 -0.17 16 8 C -0.19 -1.70 5.91 -104.42 -0.62 -2.31 16 9 C 0.10 0.68 5.06 -4.97 -0.03 0.66 16 10 N -0.46 -3.84 6.32 -246.12 -1.55 -5.39 16 11 C -0.02 -0.19 6.32 -7.55 -0.05 -0.23 16 12 C 0.13 1.30 4.60 -67.71 -0.31 0.99 16 13 N -0.71 -9.11 5.39 -53.54 -0.29 -9.40 16 14 C 0.54 9.60 7.85 -10.98 -0.09 9.51 16 15 O -0.52 -11.21 15.45 5.56 0.09 -11.12 16 16 C -0.15 -3.03 6.16 36.01 0.22 -2.81 16 17 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 18 C -0.53 -15.15 9.50 30.94 0.29 -14.86 16 19 H 0.07 1.98 7.80 -52.48 -0.41 1.57 16 20 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 21 N -0.87 -26.05 13.22 55.49 0.73 -25.32 16 22 Si 0.92 21.39 29.55 -169.99 -5.02 16.37 16 23 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 26 C -0.01 -0.09 7.45 -7.55 -0.06 -0.14 16 27 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.10 0.57 5.99 -51.93 -0.31 0.26 16 32 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.08 0.45 7.65 -51.93 -0.40 0.05 16 35 H 0.06 0.35 7.24 -51.93 -0.38 -0.03 16 36 H 0.09 0.52 7.59 -51.93 -0.39 0.12 16 37 H 0.08 0.54 6.72 -51.93 -0.35 0.19 16 38 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.11 1.31 7.45 -51.93 -0.39 0.92 16 40 H 0.40 4.43 8.76 -40.82 -0.36 4.08 16 41 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 42 H 0.09 1.66 8.14 -51.92 -0.42 1.23 16 43 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 44 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.08 0.44 7.91 -51.92 -0.41 0.03 16 LS Contribution 390.92 15.07 5.89 5.89 Total: -1.00 -35.23 390.92 -9.52 -44.76 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -6.75 Total: -0.18 kcal Atomic # 6 Polarization: -7.91 SS G_CDS: -1.00 Total: -8.90 kcal Atomic # 7 Polarization: -43.55 SS G_CDS: -0.71 Total: -44.26 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: 0.28 Total: -9.84 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -35.23 -9.52 -44.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268244921.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.374 kcal (2) G-P(sol) polarization free energy of solvation -35.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds