Wall clock time and date at job start Tue Mar 31 2020 23:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50695 * 109.46936 * 2 1 4 4 O 1.34042 * 126.77640 * 269.99289 * 3 2 1 5 5 N 1.20923 * 111.57059 * 180.02562 * 4 3 2 6 6 C 1.30171 * 111.60048 * 359.74287 * 5 4 3 7 7 C 1.50704 * 126.80087 * 180.24977 * 6 5 4 8 8 C 1.35449 * 126.77996 * 90.00437 * 3 2 1 9 9 C 1.50701 * 128.00589 * 359.95204 * 8 3 2 10 10 N 1.46906 * 109.46965 * 90.00688 * 9 8 3 11 11 C 1.47475 * 110.99695 * 265.97352 * 10 9 8 12 12 C 1.53521 * 87.93048 * 221.29471 * 11 10 9 13 13 N 1.46497 * 114.16631 * 272.37660 * 12 11 10 14 14 C 1.34783 * 119.99888 * 248.83287 * 13 12 11 15 15 O 1.21274 * 119.99862 * 0.02562 * 14 13 12 16 16 C 1.50700 * 119.99603 * 180.02562 * 14 13 12 17 17 S 1.81003 * 109.46670 * 180.02562 * 16 14 13 18 18 C 1.76201 * 99.99956 * 180.02562 * 17 16 14 19 19 H 1.08003 * 119.99682 * 0.02562 * 18 17 16 20 20 C 1.38797 * 119.99933 * 179.97438 * 18 17 16 21 21 N 1.31627 * 120.00398 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99751 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47120 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.46893 * 120.00231 * 22 20 18 25 25 H 1.48500 * 109.46949 * 240.00228 * 22 20 18 26 26 C 1.47472 * 111.00187 * 169.99871 * 10 9 8 27 27 H 1.09003 * 109.47372 * 300.00483 * 1 2 3 28 28 H 1.09004 * 109.46828 * 60.00351 * 1 2 3 29 29 H 1.08999 * 109.47204 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46934 * 239.99804 * 2 1 3 31 31 H 1.09004 * 109.46828 * 119.99649 * 2 1 3 32 32 H 1.08990 * 109.47521 * 270.17131 * 7 6 5 33 33 H 1.09006 * 109.46947 * 30.17722 * 7 6 5 34 34 H 1.09006 * 109.46920 * 150.16841 * 7 6 5 35 35 H 1.08993 * 109.47133 * 330.00726 * 9 8 3 36 36 H 1.08996 * 109.47320 * 210.00466 * 9 8 3 37 37 H 1.09003 * 113.47854 * 336.05764 * 11 10 9 38 38 H 1.08998 * 113.48126 * 106.52852 * 11 10 9 39 39 H 1.08995 * 114.34304 * 139.68372 * 12 11 10 40 40 H 0.97001 * 120.00161 * 68.84474 * 13 12 11 41 41 H 1.08992 * 109.47553 * 300.00511 * 16 14 13 42 42 H 1.08998 * 109.47070 * 60.00799 * 16 14 13 43 43 H 0.96998 * 120.00472 * 179.97438 * 21 20 18 44 44 H 1.08998 * 113.48140 * 253.47102 * 26 10 9 45 45 H 1.09007 * 113.47537 * 23.93571 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2999 2.1773 -1.0736 5 7 2.6893 3.2774 -0.7565 6 6 2.7327 3.4158 0.5371 7 6 3.1598 4.6434 1.2998 8 6 2.3027 2.1854 1.0849 9 6 2.1700 1.8128 2.5391 10 7 3.4325 1.2294 3.0122 11 6 3.4060 -0.2416 2.9099 12 6 4.0978 -0.2937 4.2794 13 7 5.5603 -0.2384 4.2150 14 6 6.2908 -1.3219 4.5451 15 8 5.7374 -2.3427 4.8949 16 6 7.7953 -1.2647 4.4794 17 16 8.4821 -2.8635 4.9779 18 6 10.2028 -2.5219 4.8138 19 1 10.5309 -1.5462 4.4870 20 6 11.1367 -3.5064 5.1055 21 7 10.7369 -4.6954 5.5043 22 14 12.9611 -3.1440 4.9322 23 1 13.1461 -1.7442 4.4721 24 1 13.6287 -3.3250 6.2463 25 1 13.5586 -4.0745 3.9410 26 6 3.4252 1.0718 4.4784 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8901 32 1 4.2331 4.6011 1.4849 33 1 2.9266 5.5336 0.7156 34 1 2.6284 4.6835 2.2508 35 1 1.3672 1.0850 2.6559 36 1 1.9403 2.7040 3.1230 37 1 2.3992 -0.6592 2.9158 38 1 4.0200 -0.6316 2.0981 39 1 3.7254 -1.0754 4.9414 40 1 6.0029 0.5781 3.9351 41 1 8.1062 -1.0381 3.4597 42 1 8.1590 -0.4873 5.1513 43 1 11.3895 -5.3836 5.7078 44 1 4.0555 1.7949 4.9961 45 1 2.4235 1.0047 4.9030 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268244921.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:53 Heat of formation + Delta-G solvation = 27.497269 kcal Electronic energy + Delta-G solvation = -26467.794351 eV Core-core repulsion = 22614.829807 eV Total energy + Delta-G solvation = -3852.964544 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.90207 -41.62992 -39.90342 -36.56608 -35.50744 -34.77697 -34.57354 -32.12782 -30.89955 -29.74399 -29.26492 -27.66239 -26.96805 -25.78558 -24.61852 -22.47589 -22.13476 -20.91054 -20.72995 -19.82234 -18.66419 -18.13589 -17.81440 -17.28307 -16.87845 -16.77519 -16.26736 -16.23339 -16.03137 -15.71501 -15.27875 -14.85206 -14.66736 -14.42452 -14.24228 -14.09086 -13.90789 -13.79656 -13.50225 -13.40247 -13.31120 -13.15468 -12.91824 -12.73878 -12.63625 -12.45733 -12.39431 -12.22235 -11.79577 -11.71077 -11.66565 -11.15489 -10.95811 -10.82531 -10.27049 -10.23602 -10.01442 -9.82826 -8.65346 -8.34630 -6.11923 0.48793 1.21881 1.27471 1.41315 1.47153 1.58458 1.60188 2.16985 2.24267 2.29119 2.99564 3.05505 3.29194 3.32906 3.48074 3.50164 3.73158 3.85957 3.94896 4.00422 4.20028 4.27037 4.28248 4.29095 4.31645 4.50207 4.52660 4.56590 4.59544 4.65074 4.69629 4.70875 4.83812 4.85930 4.88005 4.94937 4.99365 5.08396 5.26167 5.29695 5.33253 5.42706 5.55553 5.99077 6.20476 6.53238 7.07129 7.26016 7.31840 8.74751 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016359 B = 0.002088 C = 0.002033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.232840 B =13409.236395 C =13770.411854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.048 4.048 3 C -0.023 4.023 4 O 0.074 5.926 5 N -0.406 5.406 6 C 0.024 3.976 7 C -0.072 4.072 8 C -0.192 4.192 9 C 0.099 3.901 10 N -0.475 5.475 11 C -0.014 4.014 12 C 0.106 3.894 13 N -0.689 5.689 14 C 0.539 3.461 15 O -0.562 6.562 16 C -0.131 4.131 17 S -0.147 6.147 18 C -0.546 4.546 19 H 0.081 0.919 20 C 0.013 3.987 21 N -0.910 5.910 22 Si 0.998 3.002 23 H -0.258 1.258 24 H -0.273 1.273 25 H -0.274 1.274 26 C 0.007 3.993 27 H 0.063 0.937 28 H 0.054 0.946 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.103 0.897 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.100 0.900 35 H 0.079 0.921 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.070 0.930 39 H 0.099 0.901 40 H 0.416 0.584 41 H 0.105 0.895 42 H 0.109 0.891 43 H 0.271 0.729 44 H 0.100 0.900 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.178 17.791 -7.050 30.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.086 4.086 3 C -0.087 4.087 4 O 0.014 5.986 5 N -0.116 5.116 6 C -0.135 4.135 7 C -0.129 4.129 8 C -0.196 4.196 9 C -0.029 4.029 10 N -0.198 5.198 11 C -0.144 4.144 12 C -0.001 4.001 13 N -0.342 5.342 14 C 0.325 3.675 15 O -0.440 6.440 16 C -0.282 4.282 17 S 0.081 5.919 18 C -0.694 4.694 19 H 0.099 0.901 20 C -0.191 4.191 21 N -0.547 5.547 22 Si 0.819 3.181 23 H -0.182 1.182 24 H -0.198 1.198 25 H -0.200 1.200 26 C -0.121 4.121 27 H 0.082 0.918 28 H 0.073 0.927 29 H 0.104 0.896 30 H 0.111 0.889 31 H 0.122 0.878 32 H 0.101 0.899 33 H 0.093 0.907 34 H 0.119 0.881 35 H 0.097 0.903 36 H 0.122 0.878 37 H 0.121 0.879 38 H 0.088 0.912 39 H 0.117 0.883 40 H 0.253 0.747 41 H 0.123 0.877 42 H 0.127 0.873 43 H 0.080 0.920 44 H 0.118 0.882 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -23.286 17.168 -7.810 29.966 hybrid contribution 1.283 0.673 0.113 1.453 sum -22.003 17.841 -7.697 29.354 Atomic orbital electron populations 1.21763 0.92134 1.03792 1.02573 1.20355 0.97631 0.85124 1.05522 1.24847 1.00888 0.97356 0.85606 1.84750 1.62092 1.17887 1.33897 1.73841 1.19715 1.00500 1.17565 1.23969 1.00545 0.99217 0.89721 1.20241 1.02596 0.90819 0.99249 1.20930 1.07882 0.93177 0.97624 1.20956 0.91967 1.01694 0.88266 1.68966 1.31994 1.09813 1.09032 1.24533 1.01548 0.90094 0.98179 1.22042 0.80024 0.99906 0.98081 1.45310 1.05978 1.14623 1.68265 1.19989 0.88521 0.83270 0.75711 1.90682 1.73254 1.32216 1.47806 1.23367 0.94750 1.03818 1.06240 1.85505 1.04274 1.13876 1.88291 1.23229 0.91453 1.02014 1.52656 0.90108 1.26105 1.05077 0.94085 0.93860 1.70177 1.36549 1.04357 1.43606 0.84923 0.76048 0.78891 0.78194 1.18203 1.19836 1.19953 1.24254 1.02167 0.95427 0.90296 0.91804 0.92684 0.89606 0.88913 0.87842 0.89852 0.90671 0.88120 0.90304 0.87791 0.87866 0.91151 0.88282 0.74712 0.87713 0.87271 0.91977 0.88169 0.87153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.89 71.98 0.71 -0.43 16 2 C -0.05 -0.54 6.30 29.85 0.19 -0.35 16 3 C -0.02 -0.39 6.74 25.04 0.17 -0.22 16 4 O 0.07 1.71 11.20 71.62 0.80 2.51 16 5 N -0.41 -10.02 12.07 -49.57 -0.60 -10.62 16 6 C 0.02 0.48 7.33 43.58 0.32 0.80 16 7 C -0.07 -0.95 10.39 71.24 0.74 -0.21 16 8 C -0.19 -3.14 5.91 -19.73 -0.12 -3.26 16 9 C 0.10 1.05 5.06 85.56 0.43 1.48 16 10 N -0.48 -6.35 6.32 -932.57 -5.89 -12.24 16 11 C -0.01 -0.21 6.32 83.58 0.53 0.32 16 12 C 0.11 1.98 4.60 45.45 0.21 2.19 16 13 N -0.69 -16.52 5.39 -441.69 -2.38 -18.90 16 14 C 0.54 19.11 7.85 87.66 0.69 19.80 16 15 O -0.56 -24.77 15.45 -3.01 -0.05 -24.82 16 16 C -0.13 -5.12 6.16 71.24 0.44 -4.68 16 17 S -0.15 -8.07 20.57 -56.49 -1.16 -9.23 16 18 C -0.55 -31.15 9.50 67.95 0.65 -30.50 16 19 H 0.08 4.32 7.80 -2.91 -0.02 4.29 16 20 C 0.01 0.77 5.49 84.86 0.47 1.23 16 21 N -0.91 -55.72 13.22 21.65 0.29 -55.43 16 22 Si 1.00 43.69 29.55 68.60 2.03 45.71 16 23 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 24 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 25 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 26 C 0.01 0.08 7.45 83.57 0.62 0.70 16 27 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 28 H 0.05 0.51 8.14 -2.38 -0.02 0.49 16 29 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.10 0.99 5.99 -2.38 -0.01 0.98 16 32 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 34 H 0.10 0.84 7.65 -2.38 -0.02 0.83 16 35 H 0.08 0.57 7.24 -2.39 -0.02 0.55 16 36 H 0.10 0.78 7.59 -2.39 -0.02 0.76 16 37 H 0.10 1.07 6.72 -2.39 -0.02 1.05 16 38 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.10 2.18 7.45 -2.39 -0.02 2.16 16 40 H 0.42 8.15 8.76 -92.71 -0.81 7.33 16 41 H 0.10 3.80 8.14 -2.40 -0.02 3.78 16 42 H 0.11 3.86 8.14 -2.40 -0.02 3.84 16 43 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 44 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.11 0.65 7.91 -2.38 -0.02 0.63 16 Total: -1.00 -79.65 390.92 -0.72 -80.37 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: 0.20 Total: 15.79 kcal Atomic # 6 Polarization: -19.17 SS G_CDS: 6.04 Total: -13.13 kcal Atomic # 7 Polarization: -88.62 SS G_CDS: -8.58 Total: -97.20 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: 0.76 Total: -22.31 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.71 kcal Atomic # 16 Polarization: -8.07 SS G_CDS: -1.16 Total: -9.23 kcal Total: -79.65 -0.72 -80.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268244921.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.863 kcal (2) G-P(sol) polarization free energy of solvation -79.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds