Wall clock time and date at job start Tue Mar 31 2020 23:08:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53008 * 1
3 3 C 1.50705 * 109.47149 * 2 1
4 4 N 1.30943 * 122.90382 * 270.00189 * 3 2 1
5 5 C 1.29427 * 117.35857 * 179.97438 * 4 3 2
6 6 S 1.70955 * 110.39431 * 359.72289 * 5 4 3
7 7 C 1.35659 * 122.89956 * 89.99801 * 3 2 1
8 8 C 1.46685 * 126.13395 * 0.02562 * 7 3 2
9 9 O 1.21685 * 119.99294 * 47.39267 * 8 7 3
10 10 N 1.34776 * 120.00258 * 227.38715 * 8 7 3
11 11 C 1.47151 * 120.97835 * 355.83040 * 10 8 7
12 12 C 1.53305 * 108.37892 * 129.48739 * 11 10 8
13 13 O 1.42958 * 109.22465 * 52.30188 * 12 11 10
14 14 C 1.42964 * 114.16686 * 297.42099 * 13 12 11
15 15 H 1.09002 * 109.55406 * 302.63022 * 14 13 12
16 16 C 1.52997 * 109.51128 * 182.50434 * 14 13 12
17 17 H 1.09009 * 109.46925 * 185.24877 * 16 14 13
18 18 C 1.53002 * 109.47270 * 305.24780 * 16 14 13
19 19 N 1.46500 * 109.47132 * 65.25337 * 16 14 13
20 20 C 1.36942 * 119.99698 * 154.72339 * 19 16 14
21 21 H 1.07998 * 120.00154 * 359.97438 * 20 19 16
22 22 C 1.38807 * 119.99557 * 179.97438 * 20 19 16
23 23 N 1.31616 * 120.00492 * 0.02562 * 22 20 19
24 24 Si 1.86807 * 119.99728 * 179.97438 * 22 20 19
25 25 H 1.48504 * 109.46704 * 90.00634 * 24 22 20
26 26 H 1.48499 * 109.47097 * 210.00248 * 24 22 20
27 27 H 1.48500 * 109.47323 * 330.00475 * 24 22 20
28 28 C 1.47150 * 120.98249 * 175.85736 * 10 8 7
29 29 H 1.09000 * 109.47039 * 59.99937 * 1 2 3
30 30 H 1.08996 * 109.46853 * 179.97438 * 1 2 3
31 31 H 1.08999 * 109.46898 * 299.99976 * 1 2 3
32 32 H 1.09003 * 109.46956 * 240.00546 * 2 1 3
33 33 H 1.09000 * 109.47039 * 120.00062 * 2 1 3
34 34 H 1.08000 * 124.79751 * 180.02562 * 5 4 3
35 35 H 1.08994 * 109.68492 * 249.20390 * 11 10 8
36 36 H 1.09002 * 109.68433 * 9.76658 * 11 10 8
37 37 H 1.08996 * 109.50977 * 172.22776 * 12 11 10
38 38 H 1.09001 * 109.51336 * 292.32512 * 12 11 10
39 39 H 1.08996 * 109.46908 * 300.00412 * 18 16 14
40 40 H 1.09002 * 109.46608 * 60.00667 * 18 16 14
41 41 H 1.08996 * 109.47121 * 180.02562 * 18 16 14
42 42 H 0.97000 * 120.00260 * 334.99521 * 19 16 14
43 43 H 0.96999 * 120.00528 * 179.97438 * 23 22 20
44 44 H 1.08996 * 109.68167 * 110.79000 * 28 10 8
45 45 H 1.09002 * 109.70974 * 350.25122 * 28 10 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0324 1.4209 0.0000
4 7 2.2695 2.0915 -1.0994
5 6 2.6984 3.3062 -0.9743
6 16 2.8367 3.7220 0.6781
7 6 2.2780 2.1156 1.1390
8 6 2.1035 1.6206 2.5088
9 8 2.5407 0.5288 2.8213
10 7 1.4592 2.3749 3.4210
11 6 1.0021 3.7346 3.0928
12 6 -0.4740 3.8570 3.4884
13 8 -0.6327 3.4447 4.8480
14 6 -0.2928 2.0770 5.0883
15 1 -0.8963 1.4333 4.4484
16 6 -0.5598 1.7343 6.5553
17 1 -0.2140 0.7211 6.7604
18 6 0.1891 2.7205 7.4540
19 7 -1.9972 1.8234 6.8238
20 6 -2.5489 1.0991 7.8467
21 1 -1.9244 0.4618 8.4551
22 6 -3.9107 1.1840 8.1014
23 7 -4.6719 1.9602 7.3595
24 14 -4.6634 0.1953 9.4963
25 1 -4.6322 0.9983 10.7451
26 1 -6.0698 -0.1431 9.1604
27 1 -3.8867 -1.0551 9.6921
28 6 1.1925 1.8634 4.7747
29 1 -0.3633 0.5138 -0.8900
30 1 -0.3633 -1.0276 -0.0005
31 1 -0.3633 0.5138 0.8900
32 1 1.8934 -0.5138 -0.8901
33 1 1.8934 -0.5138 0.8900
34 1 2.9310 3.9655 -1.7975
35 1 1.5924 4.4642 3.6472
36 1 1.1111 3.9103 2.0226
37 1 -0.7945 4.8934 3.3824
38 1 -1.0783 3.2212 2.8414
39 1 1.2585 2.6541 7.2541
40 1 -0.1568 3.7336 7.2488
41 1 -0.0008 2.4760 8.4990
42 1 -2.5589 2.3925 6.2746
43 1 -5.6237 2.0192 7.5373
44 1 1.8020 2.4046 5.4983
45 1 1.4277 0.8000 4.8189
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001276777802.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 23:08:52
Heat of formation + Delta-G solvation = -12.876002 kcal
Electronic energy + Delta-G solvation = -28055.806731 eV
Core-core repulsion = 24201.091471 eV
Total energy + Delta-G solvation = -3854.715260 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 0.64 seconds
Orbital eigenvalues (eV)
-40.89730 -39.91264 -38.33753 -35.59747 -34.64886 -33.79644 -32.56669 -30.75553
-30.01829 -28.51551 -27.42378 -26.19711 -24.79278 -23.59709 -23.49240 -22.75378
-20.94363 -19.70293 -18.79554 -18.78574 -17.35680 -17.08263 -16.73911 -16.05137
-15.64039 -15.51989 -14.95524 -14.90533 -14.57405 -14.47047 -14.38538 -14.01915
-13.86726 -13.36860 -13.27969 -12.93307 -12.76826 -12.56643 -12.33400 -12.19670
-12.04071 -11.52759 -11.38459 -11.17868 -11.16636 -10.87104 -10.76199 -10.63072
-10.43927 -10.25752 -10.05702 -9.98517 -9.88151 -9.69290 -9.66058 -9.18931
-8.90286 -8.60799 -6.94373 -5.74044 -3.02995 -0.03160 0.74273 1.15894
2.18039 2.51702 2.82469 3.44920 3.50171 3.51656 3.75329 3.90595
4.19607 4.55845 4.62742 4.67195 4.70441 4.79187 5.00923 5.08802
5.11017 5.16830 5.24180 5.27227 5.36653 5.58289 5.60407 5.65121
5.70356 5.74187 5.76593 5.89938 5.92034 5.95993 6.07977 6.13928
6.27258 6.43637 6.62929 6.80215 7.02804 7.14557 7.25537 7.41430
7.71398 7.81041 8.44008 9.56031 10.13078 10.49660 11.48332
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.018921 B = 0.002826 C = 0.002708
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1479.445301 B = 9904.332253 C =10338.808688
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C -0.064 4.064
3 C 0.139 3.861
4 N -0.468 5.468
5 C 0.024 3.976
6 S 0.173 5.827
7 C -0.286 4.286
8 C 0.599 3.401
9 O -0.519 6.519
10 N -0.603 5.603
11 C 0.061 3.939
12 C 0.049 3.951
13 O -0.355 6.355
14 C 0.076 3.924
15 H 0.065 0.935
16 C 0.185 3.815
17 H 0.060 0.940
18 C -0.163 4.163
19 N -0.719 5.719
20 C -0.239 4.239
21 H 0.071 0.929
22 C -0.013 4.013
23 N -0.931 5.931
24 Si 0.906 3.094
25 H -0.290 1.290
26 H -0.292 1.292
27 H -0.282 1.282
28 C 0.084 3.916
29 H 0.057 0.943
30 H 0.068 0.932
31 H 0.054 0.946
32 H 0.085 0.915
33 H 0.098 0.902
34 H 0.206 0.794
35 H 0.084 0.916
36 H 0.089 0.911
37 H 0.106 0.894
38 H 0.054 0.946
39 H 0.034 0.966
40 H 0.057 0.943
41 H 0.053 0.947
42 H 0.389 0.611
43 H 0.255 0.745
44 H 0.085 0.915
45 H 0.103 0.897
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 16.291 5.823 -17.632 24.702
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.104 4.104
3 C 0.002 3.998
4 N -0.181 5.181
5 C -0.272 4.272
6 S 0.428 5.572
7 C -0.410 4.410
8 C 0.385 3.615
9 O -0.396 6.396
10 N -0.336 5.336
11 C -0.062 4.062
12 C -0.029 4.029
13 O -0.273 6.273
14 C 0.016 3.984
15 H 0.083 0.917
16 C 0.075 3.925
17 H 0.078 0.922
18 C -0.223 4.223
19 N -0.360 5.360
20 C -0.371 4.371
21 H 0.088 0.912
22 C -0.209 4.209
23 N -0.579 5.579
24 Si 0.737 3.263
25 H -0.218 1.218
26 H -0.218 1.218
27 H -0.208 1.208
28 C -0.038 4.038
29 H 0.076 0.924
30 H 0.087 0.913
31 H 0.073 0.927
32 H 0.104 0.896
33 H 0.116 0.884
34 H 0.222 0.778
35 H 0.102 0.898
36 H 0.107 0.893
37 H 0.124 0.876
38 H 0.072 0.928
39 H 0.053 0.947
40 H 0.076 0.924
41 H 0.072 0.928
42 H 0.223 0.777
43 H 0.064 0.936
44 H 0.103 0.897
45 H 0.121 0.879
Dipole moment (debyes) X Y Z Total
from point charges 16.668 5.992 -17.215 24.699
hybrid contribution -0.777 -0.955 0.156 1.241
sum 15.890 5.037 -17.059 23.851
Atomic orbital electron populations
1.21698 0.93630 1.02680 1.02113 1.20408 0.96669 0.88479 1.04821
1.20622 0.96199 0.98127 0.84851 1.66101 1.14766 1.06122 1.31127
1.28787 1.01423 0.96109 1.00858 1.84090 1.59462 1.10865 1.02755
1.25431 1.17565 0.98900 0.99099 1.16730 0.78160 0.84329 0.82304
1.90829 1.49069 1.20713 1.79010 1.48051 1.56635 1.15725 1.13208
1.22822 0.97950 0.83495 1.01976 1.22869 0.93021 1.01637 0.85401
1.88116 1.87410 1.27145 1.24659 1.23009 0.92153 0.83328 0.99896
0.91726 1.20194 0.87568 0.96833 0.87955 0.92216 1.22418 0.97431
1.01453 1.00958 1.42350 1.01285 1.54228 1.38185 1.19244 0.91398
1.19170 1.07247 0.91152 1.24734 0.96319 1.00268 0.99540 1.69673
1.04998 1.42059 1.41150 0.86212 0.78521 0.79609 0.81976 1.21750
1.21833 1.20751 1.22589 0.97856 1.02135 0.81185 0.92352 0.91347
0.92681 0.89623 0.88376 0.77782 0.89770 0.89339 0.87617 0.92780
0.94675 0.92408 0.92834 0.77669 0.93561 0.89698 0.87914
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.50 9.90 37.16 0.37 -1.13 16
2 C -0.06 -0.71 6.13 -27.88 -0.17 -0.88 16
3 C 0.14 1.61 6.04 -83.89 -0.51 1.11 16
4 N -0.47 -4.95 10.50 -11.53 -0.12 -5.07 16
5 C 0.02 0.18 12.22 51.75 0.63 0.81 16
6 S 0.17 1.33 20.28 -107.50 -2.18 -0.85 16
7 C -0.29 -3.32 5.42 -37.10 -0.20 -3.52 16
8 C 0.60 8.28 7.23 -12.85 -0.09 8.19 16
9 O -0.52 -8.62 15.01 5.20 0.08 -8.54 16
10 N -0.60 -7.79 3.02 -173.82 -0.52 -8.32 16
11 C 0.06 0.64 6.08 -3.53 -0.02 0.62 16
12 C 0.05 0.59 6.98 37.32 0.26 0.85 16
13 O -0.36 -5.84 9.24 -35.23 -0.33 -6.16 16
14 C 0.08 1.26 2.61 -26.58 -0.07 1.19 16
15 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16
16 C 0.19 3.64 2.77 -67.93 -0.19 3.45 16
17 H 0.06 1.17 8.08 -51.92 -0.42 0.75 16
18 C -0.16 -2.93 9.06 37.16 0.34 -2.59 16
19 N -0.72 -18.02 5.10 -53.42 -0.27 -18.29 16
20 C -0.24 -6.62 9.93 -15.06 -0.15 -6.76 16
21 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16
22 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16
23 N -0.93 -28.16 13.06 55.49 0.72 -27.44 16
24 Si 0.91 22.40 29.55 -169.99 -5.02 17.37 16
25 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16
26 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16
27 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16
28 C 0.08 1.20 5.81 -3.53 -0.02 1.18 16
29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16
30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16
31 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16
32 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16
33 H 0.10 1.23 6.41 -51.93 -0.33 0.90 16
34 H 0.21 0.70 8.06 -52.49 -0.42 0.28 16
35 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16
36 H 0.09 0.78 4.35 -36.09 -0.16 0.62 16
37 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16
38 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16
39 H 0.03 0.52 6.42 -51.93 -0.33 0.19 16
40 H 0.06 1.10 7.55 -51.93 -0.39 0.70 16
41 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16
42 H 0.39 10.54 7.59 -40.82 -0.31 10.23 16
43 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16
44 H 0.08 1.14 6.27 -51.93 -0.33 0.81 16
45 H 0.10 1.52 7.11 -51.93 -0.37 1.15 16
LS Contribution 374.05 15.07 5.64 5.64
Total: -1.00 -33.45 374.05 -8.34 -41.79
By element:
Atomic # 1 Polarization: 14.23 SS G_CDS: -6.41 Total: 7.82 kcal
Atomic # 6 Polarization: 1.97 SS G_CDS: 0.08 Total: 2.05 kcal
Atomic # 7 Polarization: -58.92 SS G_CDS: -0.19 Total: -59.11 kcal
Atomic # 8 Polarization: -14.46 SS G_CDS: -0.25 Total: -14.71 kcal
Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.37 kcal
Atomic # 16 Polarization: 1.33 SS G_CDS: -2.18 Total: -0.85 kcal
Total LS contribution 5.64 Total: 5.64 kcal
Total: -33.45 -8.34 -41.79 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001276777802.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 28.916 kcal
(2) G-P(sol) polarization free energy of solvation -33.451 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.534 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.342 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.792 kcal
(6) G-S(sol) free energy of system = (1) + (5) -12.876 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds