Wall clock time and date at job start Tue Mar 31 2020 23:08:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53008 * 1
3 3 C 1.50705 * 109.47149 * 2 1
4 4 N 1.30943 * 122.90382 * 270.00189 * 3 2 1
5 5 C 1.29427 * 117.35857 * 179.97438 * 4 3 2
6 6 S 1.70955 * 110.39431 * 359.72289 * 5 4 3
7 7 C 1.35659 * 122.89956 * 89.99801 * 3 2 1
8 8 C 1.46685 * 126.13395 * 0.02562 * 7 3 2
9 9 O 1.21685 * 119.99294 * 47.39267 * 8 7 3
10 10 N 1.34776 * 120.00258 * 227.38715 * 8 7 3
11 11 C 1.47151 * 120.97835 * 355.83040 * 10 8 7
12 12 C 1.53305 * 108.37892 * 129.48739 * 11 10 8
13 13 O 1.42958 * 109.22465 * 52.30188 * 12 11 10
14 14 C 1.42964 * 114.16686 * 297.42099 * 13 12 11
15 15 H 1.09002 * 109.55406 * 302.63022 * 14 13 12
16 16 C 1.52997 * 109.51128 * 182.50434 * 14 13 12
17 17 H 1.09009 * 109.46925 * 185.24877 * 16 14 13
18 18 C 1.53002 * 109.47270 * 305.24780 * 16 14 13
19 19 N 1.46500 * 109.47132 * 65.25337 * 16 14 13
20 20 C 1.36942 * 119.99698 * 154.72339 * 19 16 14
21 21 H 1.07998 * 120.00154 * 359.97438 * 20 19 16
22 22 C 1.38807 * 119.99557 * 179.97438 * 20 19 16
23 23 N 1.31616 * 120.00492 * 0.02562 * 22 20 19
24 24 Si 1.86807 * 119.99728 * 179.97438 * 22 20 19
25 25 H 1.48504 * 109.46704 * 90.00634 * 24 22 20
26 26 H 1.48499 * 109.47097 * 210.00248 * 24 22 20
27 27 H 1.48500 * 109.47323 * 330.00475 * 24 22 20
28 28 C 1.47150 * 120.98249 * 175.85736 * 10 8 7
29 29 H 1.09000 * 109.47039 * 59.99937 * 1 2 3
30 30 H 1.08996 * 109.46853 * 179.97438 * 1 2 3
31 31 H 1.08999 * 109.46898 * 299.99976 * 1 2 3
32 32 H 1.09003 * 109.46956 * 240.00546 * 2 1 3
33 33 H 1.09000 * 109.47039 * 120.00062 * 2 1 3
34 34 H 1.08000 * 124.79751 * 180.02562 * 5 4 3
35 35 H 1.08994 * 109.68492 * 249.20390 * 11 10 8
36 36 H 1.09002 * 109.68433 * 9.76658 * 11 10 8
37 37 H 1.08996 * 109.50977 * 172.22776 * 12 11 10
38 38 H 1.09001 * 109.51336 * 292.32512 * 12 11 10
39 39 H 1.08996 * 109.46908 * 300.00412 * 18 16 14
40 40 H 1.09002 * 109.46608 * 60.00667 * 18 16 14
41 41 H 1.08996 * 109.47121 * 180.02562 * 18 16 14
42 42 H 0.97000 * 120.00260 * 334.99521 * 19 16 14
43 43 H 0.96999 * 120.00528 * 179.97438 * 23 22 20
44 44 H 1.08996 * 109.68167 * 110.79000 * 28 10 8
45 45 H 1.09002 * 109.70974 * 350.25122 * 28 10 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0324 1.4209 0.0000
4 7 2.2695 2.0915 -1.0994
5 6 2.6984 3.3062 -0.9743
6 16 2.8367 3.7220 0.6781
7 6 2.2780 2.1156 1.1390
8 6 2.1035 1.6206 2.5088
9 8 2.5407 0.5288 2.8213
10 7 1.4592 2.3749 3.4210
11 6 1.0021 3.7346 3.0928
12 6 -0.4740 3.8570 3.4884
13 8 -0.6327 3.4447 4.8480
14 6 -0.2928 2.0770 5.0883
15 1 -0.8963 1.4333 4.4484
16 6 -0.5598 1.7343 6.5553
17 1 -0.2140 0.7211 6.7604
18 6 0.1891 2.7205 7.4540
19 7 -1.9972 1.8234 6.8238
20 6 -2.5489 1.0991 7.8467
21 1 -1.9244 0.4618 8.4551
22 6 -3.9107 1.1840 8.1014
23 7 -4.6719 1.9602 7.3595
24 14 -4.6634 0.1953 9.4963
25 1 -4.6322 0.9983 10.7451
26 1 -6.0698 -0.1431 9.1604
27 1 -3.8867 -1.0551 9.6921
28 6 1.1925 1.8634 4.7747
29 1 -0.3633 0.5138 -0.8900
30 1 -0.3633 -1.0276 -0.0005
31 1 -0.3633 0.5138 0.8900
32 1 1.8934 -0.5138 -0.8901
33 1 1.8934 -0.5138 0.8900
34 1 2.9310 3.9655 -1.7975
35 1 1.5924 4.4642 3.6472
36 1 1.1111 3.9103 2.0226
37 1 -0.7945 4.8934 3.3824
38 1 -1.0783 3.2212 2.8414
39 1 1.2585 2.6541 7.2541
40 1 -0.1568 3.7336 7.2488
41 1 -0.0008 2.4760 8.4990
42 1 -2.5589 2.3925 6.2746
43 1 -5.6237 2.0192 7.5373
44 1 1.8020 2.4046 5.4983
45 1 1.4277 0.8000 4.8189
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001276777802.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 23:08:52
Heat of formation + Delta-G solvation = -36.486903 kcal
Electronic energy + Delta-G solvation = -28056.830576 eV
Core-core repulsion = 24201.091471 eV
Total energy + Delta-G solvation = -3855.739105 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 0.74 seconds
Orbital eigenvalues (eV)
-41.85074 -40.85208 -39.49800 -37.16202 -35.87174 -34.63606 -34.34277 -32.16349
-31.04851 -30.02406 -28.60123 -27.11004 -26.32984 -25.02289 -24.32582 -23.97971
-22.03757 -21.13067 -19.74491 -19.55652 -19.24642 -18.08883 -17.84731 -17.20360
-16.89288 -16.67468 -16.19167 -15.96107 -15.80689 -15.71078 -15.21987 -15.18552
-15.06020 -14.79022 -14.48691 -14.28257 -14.02470 -13.72575 -13.52896 -13.27578
-13.06519 -12.99818 -12.83584 -12.47040 -12.42808 -12.36122 -12.18012 -12.02789
-11.91286 -11.65603 -11.64094 -11.35381 -11.15627 -10.93399 -10.78352 -10.47969
-9.88155 -9.71484 -9.00199 -7.91496 -5.20128 -0.75500 0.03455 0.48794
1.33421 1.48029 1.49604 1.54858 1.57974 1.88423 2.57221 2.73119
3.08456 3.29331 3.42400 3.53615 3.81418 3.88225 3.88943 3.96561
4.02687 4.04695 4.21656 4.25496 4.32616 4.34817 4.43684 4.50087
4.55008 4.60872 4.74003 4.75834 4.89072 4.91938 4.93418 5.04398
5.08851 5.13389 5.21677 5.26531 5.52716 5.63090 6.03446 6.19472
6.30039 6.54219 6.78088 7.36531 8.11834 8.36549 9.31979
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.018921 B = 0.002826 C = 0.002708
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1479.445301 B = 9904.332253 C =10338.808688
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.136 4.136
2 C -0.065 4.065
3 C 0.134 3.866
4 N -0.496 5.496
5 C 0.039 3.961
6 S 0.232 5.768
7 C -0.325 4.325
8 C 0.599 3.401
9 O -0.558 6.558
10 N -0.604 5.604
11 C 0.066 3.934
12 C 0.042 3.958
13 O -0.377 6.377
14 C 0.090 3.910
15 H 0.040 0.960
16 C 0.177 3.823
17 H 0.060 0.940
18 C -0.149 4.149
19 N -0.733 5.733
20 C -0.238 4.238
21 H 0.077 0.923
22 C -0.076 4.076
23 N -0.969 5.969
24 Si 0.971 3.029
25 H -0.288 1.288
26 H -0.297 1.297
27 H -0.269 1.269
28 C 0.095 3.905
29 H 0.064 0.936
30 H 0.075 0.925
31 H 0.035 0.965
32 H 0.095 0.905
33 H 0.077 0.923
34 H 0.248 0.752
35 H 0.106 0.894
36 H 0.108 0.892
37 H 0.134 0.866
38 H 0.044 0.956
39 H 0.071 0.929
40 H 0.047 0.953
41 H 0.037 0.963
42 H 0.375 0.625
43 H 0.250 0.750
44 H 0.100 0.900
45 H 0.093 0.907
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 18.124 7.387 -18.766 27.115
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.194 4.194
2 C -0.105 4.105
3 C -0.004 4.004
4 N -0.210 5.210
5 C -0.255 4.255
6 S 0.489 5.511
7 C -0.449 4.449
8 C 0.386 3.614
9 O -0.437 6.437
10 N -0.337 5.337
11 C -0.057 4.057
12 C -0.035 4.035
13 O -0.295 6.295
14 C 0.031 3.969
15 H 0.058 0.942
16 C 0.068 3.932
17 H 0.077 0.923
18 C -0.208 4.208
19 N -0.373 5.373
20 C -0.370 4.370
21 H 0.095 0.905
22 C -0.268 4.268
23 N -0.620 5.620
24 Si 0.800 3.200
25 H -0.215 1.215
26 H -0.224 1.224
27 H -0.194 1.194
28 C -0.028 4.028
29 H 0.083 0.917
30 H 0.094 0.906
31 H 0.054 0.946
32 H 0.114 0.886
33 H 0.096 0.904
34 H 0.264 0.736
35 H 0.124 0.876
36 H 0.125 0.875
37 H 0.152 0.848
38 H 0.062 0.938
39 H 0.090 0.910
40 H 0.066 0.934
41 H 0.056 0.944
42 H 0.207 0.793
43 H 0.058 0.942
44 H 0.118 0.882
45 H 0.111 0.889
Dipole moment (debyes) X Y Z Total
from point charges 18.558 7.578 -18.351 27.177
hybrid contribution -1.253 -1.350 0.383 1.881
sum 17.305 6.228 -17.969 25.712
Atomic orbital electron populations
1.21635 0.93390 1.03013 1.01402 1.20356 0.96859 0.89037 1.04227
1.20668 0.96063 0.98203 0.85425 1.66152 1.16618 1.07532 1.30674
1.29562 0.98376 0.95406 1.02161 1.83813 1.57952 1.07293 1.02087
1.25298 1.19986 1.01901 0.97730 1.17039 0.77449 0.83754 0.83151
1.90797 1.50706 1.22325 1.79916 1.48101 1.56379 1.16634 1.12569
1.22963 0.96747 0.82483 1.03495 1.23145 0.94357 1.02813 0.83170
1.88069 1.87861 1.26354 1.27263 1.22585 0.93503 0.83541 0.97290
0.94170 1.20425 0.84930 0.97469 0.90401 0.92258 1.22217 0.99348
0.99968 0.99284 1.42525 1.03450 1.53771 1.37531 1.19641 0.91698
1.18442 1.07235 0.90510 1.25533 0.96988 1.01987 1.02315 1.69833
1.04837 1.44146 1.43149 0.85177 0.77250 0.78582 0.78983 1.21477
1.22385 1.19420 1.22342 0.95921 1.01962 0.82572 0.91666 0.90576
0.94553 0.88647 0.90421 0.73631 0.87631 0.87472 0.84848 0.93776
0.91031 0.93385 0.94395 0.79260 0.94154 0.88226 0.88913
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.92 9.90 71.98 0.71 -2.21 16
2 C -0.07 -1.47 6.13 29.85 0.18 -1.29 16
3 C 0.13 3.01 6.04 42.10 0.25 3.26 16
4 N -0.50 -9.40 10.50 -190.40 -2.00 -11.40 16
5 C 0.04 0.44 12.22 130.60 1.60 2.03 16
6 S 0.23 2.80 20.28 -56.49 -1.15 1.65 16
7 C -0.33 -7.16 5.42 23.88 0.13 -7.03 16
8 C 0.60 16.43 7.23 86.45 0.63 17.05 16
9 O -0.56 -19.04 15.01 -4.30 -0.06 -19.11 16
10 N -0.60 -15.09 3.02 -822.05 -2.48 -17.57 16
11 C 0.07 1.22 6.08 86.36 0.53 1.75 16
12 C 0.04 0.98 6.98 72.08 0.50 1.48 16
13 O -0.38 -12.24 9.24 -148.98 -1.38 -13.62 16
14 C 0.09 3.05 2.61 30.69 0.08 3.13 16
15 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16
16 C 0.18 6.99 2.77 44.99 0.12 7.12 16
17 H 0.06 2.34 8.08 -2.38 -0.02 2.32 16
18 C -0.15 -5.22 9.06 71.98 0.65 -4.57 16
19 N -0.73 -37.57 5.10 -322.93 -1.65 -39.22 16
20 C -0.24 -13.34 9.93 84.03 0.83 -12.51 16
21 H 0.08 4.11 7.83 -2.91 -0.02 4.08 16
22 C -0.08 -4.42 5.50 84.86 0.47 -3.95 16
23 N -0.97 -60.11 13.06 21.65 0.28 -59.82 16
24 Si 0.97 46.65 29.55 68.60 2.03 48.68 16
25 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16
26 H -0.30 -14.40 7.11 99.48 0.71 -13.70 16
27 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16
28 C 0.09 2.64 5.81 86.35 0.50 3.15 16
29 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16
30 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16
31 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16
32 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16
33 H 0.08 2.07 6.41 -2.39 -0.02 2.05 16
34 H 0.25 0.41 8.06 -2.91 -0.02 0.38 16
35 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16
36 H 0.11 1.58 4.35 -12.45 -0.05 1.53 16
37 H 0.13 2.31 8.14 -2.39 -0.02 2.29 16
38 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16
39 H 0.07 1.97 6.42 -2.39 -0.02 1.96 16
40 H 0.05 1.78 7.55 -2.39 -0.02 1.76 16
41 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16
42 H 0.38 21.03 7.59 -92.71 -0.70 20.33 16
43 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16
44 H 0.10 2.48 6.27 -2.39 -0.01 2.46 16
45 H 0.09 2.79 7.11 -2.39 -0.02 2.77 16
Total: -1.00 -74.95 374.05 1.05 -73.89
By element:
Atomic # 1 Polarization: 28.83 SS G_CDS: 0.27 Total: 29.10 kcal
Atomic # 6 Polarization: 0.23 SS G_CDS: 7.19 Total: 7.42 kcal
Atomic # 7 Polarization: -122.18 SS G_CDS: -5.85 Total: -128.02 kcal
Atomic # 8 Polarization: -31.29 SS G_CDS: -1.44 Total: -32.73 kcal
Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.68 kcal
Atomic # 16 Polarization: 2.80 SS G_CDS: -1.15 Total: 1.65 kcal
Total: -74.95 1.05 -73.89 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001276777802.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 37.408 kcal
(2) G-P(sol) polarization free energy of solvation -74.949 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.541 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.054 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.895 kcal
(6) G-S(sol) free energy of system = (1) + (5) -36.487 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.74 seconds