Wall clock time and date at job start Tue Mar 31 2020 23:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50696 * 109.47485 * 2 1 4 4 N 1.29437 * 124.80706 * 89.97671 * 3 2 1 5 5 C 1.30937 * 117.36634 * 180.02562 * 4 3 2 6 6 C 1.35665 * 114.19387 * 0.02562 * 5 4 3 7 7 C 1.46675 * 126.12956 * 180.02562 * 6 5 4 8 8 O 1.21683 * 120.00281 * 42.69756 * 7 6 5 9 9 N 1.34784 * 119.99605 * 222.69775 * 7 6 5 10 10 C 1.47147 * 120.98434 * 356.30110 * 9 7 6 11 11 C 1.53294 * 108.38691 * 129.48889 * 10 9 7 12 12 O 1.42965 * 109.22395 * 52.29989 * 11 10 9 13 13 C 1.42960 * 114.16684 * 297.42777 * 12 11 10 14 14 H 1.09006 * 109.51028 * 302.60037 * 13 12 11 15 15 C 1.52999 * 109.51257 * 182.50239 * 13 12 11 16 16 H 1.08994 * 109.47343 * 179.97438 * 15 13 12 17 17 C 1.53005 * 109.47046 * 59.99364 * 15 13 12 18 18 N 1.46500 * 109.47080 * 299.99501 * 15 13 12 19 19 C 1.36928 * 120.00019 * 204.99694 * 18 15 13 20 20 H 1.08000 * 120.00277 * 0.02562 * 19 18 15 21 21 C 1.38815 * 119.99963 * 179.97438 * 19 18 15 22 22 N 1.31620 * 119.99795 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00042 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47102 * 90.00262 * 23 21 19 25 25 H 1.48503 * 109.46911 * 210.00332 * 23 21 19 26 26 H 1.48492 * 109.47149 * 330.00302 * 23 21 19 27 27 C 1.47155 * 120.97829 * 176.32838 * 9 7 6 28 28 S 1.70955 * 124.80678 * 270.29262 * 3 2 1 29 29 H 1.09008 * 109.47075 * 300.00074 * 1 2 3 30 30 H 1.09004 * 109.47041 * 59.99701 * 1 2 3 31 31 H 1.08993 * 109.47779 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47317 * 240.00082 * 2 1 3 33 33 H 1.08996 * 109.47332 * 120.00195 * 2 1 3 34 34 H 1.07998 * 122.90012 * 180.02562 * 5 4 3 35 35 H 1.09003 * 109.68024 * 9.76290 * 10 9 7 36 36 H 1.09000 * 109.68277 * 249.21230 * 10 9 7 37 37 H 1.09005 * 109.50890 * 292.38350 * 11 10 9 38 38 H 1.08995 * 109.55488 * 172.25415 * 11 10 9 39 39 H 1.08994 * 109.47102 * 300.00212 * 17 15 13 40 40 H 1.08994 * 109.46692 * 180.02562 * 17 15 13 41 41 H 1.09004 * 109.46792 * 60.00055 * 17 15 13 42 42 H 0.96998 * 119.99714 * 25.00244 * 18 15 13 43 43 H 0.97004 * 119.99866 * 179.97438 * 22 21 19 44 44 H 1.08997 * 109.68296 * 110.79337 * 27 9 7 45 45 H 1.08998 * 109.68452 * 350.23206 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.2783 2.1175 1.0628 5 6 2.7107 3.3417 0.8932 6 6 2.8406 3.7105 -0.4058 7 6 3.3019 5.0150 -0.8925 8 8 4.2529 5.5600 -0.3641 9 7 2.6723 5.6101 -1.9250 10 6 1.5721 4.9354 -2.6319 11 6 0.3841 5.9010 -2.7112 12 8 0.8244 7.1447 -3.2619 13 6 1.8045 7.8209 -2.4707 14 1 1.4080 7.9949 -1.4704 15 6 2.1522 9.1606 -3.1229 16 1 2.8991 9.6757 -2.5189 17 6 0.8920 10.0229 -3.2196 18 7 2.6873 8.9255 -4.4662 19 6 3.5207 9.8467 -5.0421 20 1 3.7839 10.7465 -4.5059 21 6 4.0281 9.6237 -6.3148 22 7 3.7078 8.5269 -6.9681 23 14 5.1656 10.8802 -7.1002 24 1 6.5732 10.5590 -6.7526 25 1 4.9994 10.8444 -8.5754 26 1 4.8285 12.2359 -6.5968 27 6 3.0653 6.9536 -2.3791 28 16 2.3509 2.3431 -1.4037 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.9438 4.0008 1.7164 35 1 1.2803 4.0384 -2.0856 36 1 1.8932 4.6651 -3.6378 37 1 -0.0172 6.0674 -1.7114 38 1 -0.3907 5.4747 -3.3483 39 1 0.1448 9.5080 -3.8233 40 1 1.1396 10.9771 -3.6845 41 1 0.4939 10.1978 -2.2200 42 1 2.4511 8.1172 -4.9477 43 1 4.0621 8.3712 -7.8576 44 1 3.5366 6.8864 -3.3596 45 1 3.7621 7.3931 -1.6655 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276820292.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:52 Heat of formation + Delta-G solvation = -14.700430 kcal Electronic energy + Delta-G solvation = -27642.354442 eV Core-core repulsion = 23787.560068 eV Total energy + Delta-G solvation = -3854.794373 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.60517 -39.79703 -38.28361 -35.55647 -34.60277 -34.40808 -32.34560 -30.72400 -29.95937 -28.41928 -27.77479 -26.23105 -24.36907 -23.55052 -23.34784 -22.69587 -20.96897 -19.76324 -18.91838 -18.65602 -17.36398 -17.05854 -16.58837 -16.03048 -15.66071 -15.24642 -15.01963 -14.83907 -14.66723 -14.47374 -14.32330 -14.13817 -13.70737 -13.39686 -13.25731 -12.98861 -12.78785 -12.44974 -12.18961 -12.03622 -11.91976 -11.86013 -11.64016 -11.42647 -11.22346 -10.86376 -10.78758 -10.55466 -10.40579 -10.22153 -10.01058 -9.94583 -9.88684 -9.59007 -9.54012 -9.16213 -8.92835 -8.47136 -6.93228 -5.74148 -3.02600 0.02496 0.79777 1.24247 2.26573 2.70912 2.95758 3.45272 3.50822 3.51900 3.67503 3.92215 4.31200 4.45861 4.60674 4.70192 4.72885 4.74269 4.87986 5.01259 5.06131 5.14545 5.24233 5.34040 5.34851 5.43985 5.45984 5.60373 5.64647 5.67894 5.72502 5.78255 5.81235 5.97394 6.18801 6.26510 6.38829 6.48417 6.64910 6.76977 7.12423 7.19303 7.33230 7.42149 7.72419 7.95185 8.44094 9.56538 10.12928 10.50244 11.48073 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019111 B = 0.002721 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.751714 B =10287.834156 C =10450.122499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.050 4.050 3 C 0.045 3.955 4 N -0.476 5.476 5 C 0.109 3.891 6 C -0.286 4.286 7 C 0.593 3.407 8 O -0.522 6.522 9 N -0.602 5.602 10 C 0.060 3.940 11 C 0.052 3.948 12 O -0.356 6.356 13 C 0.078 3.922 14 H 0.056 0.944 15 C 0.183 3.817 16 H 0.061 0.939 17 C -0.160 4.160 18 N -0.717 5.717 19 C -0.239 4.239 20 H 0.070 0.930 21 C -0.012 4.012 22 N -0.930 5.930 23 Si 0.905 3.095 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.282 1.282 27 C 0.087 3.913 28 S 0.186 5.814 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.185 0.815 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.050 0.950 38 H 0.105 0.895 39 H 0.056 0.944 40 H 0.054 0.946 41 H 0.032 0.968 42 H 0.390 0.610 43 H 0.254 0.746 44 H 0.102 0.898 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.233 -17.427 13.779 24.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.091 4.091 3 C -0.230 4.230 4 N -0.189 5.189 5 C -0.047 4.047 6 C -0.410 4.410 7 C 0.379 3.621 8 O -0.399 6.399 9 N -0.335 5.335 10 C -0.065 4.065 11 C -0.027 4.027 12 O -0.274 6.274 13 C 0.018 3.982 14 H 0.074 0.926 15 C 0.072 3.928 16 H 0.079 0.921 17 C -0.221 4.221 18 N -0.360 5.360 19 C -0.370 4.370 20 H 0.088 0.912 21 C -0.208 4.208 22 N -0.578 5.578 23 Si 0.736 3.264 24 H -0.218 1.218 25 H -0.219 1.219 26 H -0.208 1.208 27 C -0.034 4.034 28 S 0.443 5.557 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.107 0.893 33 H 0.115 0.885 34 H 0.201 0.799 35 H 0.105 0.895 36 H 0.107 0.893 37 H 0.068 0.932 38 H 0.123 0.877 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.052 0.948 42 H 0.225 0.775 43 H 0.064 0.936 44 H 0.120 0.880 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -8.827 -17.387 13.244 23.572 hybrid contribution 0.848 0.827 0.278 1.217 sum -7.979 -16.559 13.522 22.819 Atomic orbital electron populations 1.21787 0.93113 1.02860 1.02881 1.20298 0.96980 0.87216 1.04629 1.27652 1.01382 1.02079 0.91903 1.66205 1.15486 1.05871 1.31378 1.22063 0.96035 0.91520 0.95080 1.25742 1.16425 1.00776 0.98014 1.16786 0.82584 0.82910 0.79843 1.90856 1.26539 1.64830 1.57712 1.48098 1.34856 1.18807 1.31768 1.22840 0.88510 0.96458 0.98645 1.22848 0.94951 0.85501 0.99371 1.88122 1.58368 1.32719 1.48176 1.22954 0.87336 0.93564 0.94319 0.92598 1.20259 0.94129 0.89586 0.88837 0.92145 1.22350 0.99538 1.00913 0.99256 1.42383 1.55653 1.24822 1.13107 1.19237 1.19776 1.00021 0.97965 0.91197 1.24718 1.01056 0.97705 0.97329 1.69672 1.48591 1.26106 1.13469 0.86225 0.80804 0.80809 0.78556 1.21791 1.21871 1.20818 1.22543 0.98129 0.79796 1.02913 1.84164 1.57579 1.03128 1.10820 0.91809 0.92178 0.91125 0.89329 0.88505 0.79855 0.89517 0.89315 0.93195 0.87655 0.92533 0.92691 0.94849 0.77525 0.93605 0.88007 0.88292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 9.89 37.15 0.37 -0.36 16 2 C -0.05 -0.29 6.51 -27.89 -0.18 -0.47 16 3 C 0.04 0.41 6.64 -13.29 -0.09 0.32 16 4 N -0.48 -5.34 10.51 -11.50 -0.12 -5.46 16 5 C 0.11 1.30 11.29 -18.85 -0.21 1.08 16 6 C -0.29 -3.60 5.57 -37.10 -0.21 -3.80 16 7 C 0.59 9.25 7.58 -12.85 -0.10 9.15 16 8 O -0.52 -9.86 16.57 5.20 0.09 -9.77 16 9 N -0.60 -9.05 3.02 -173.82 -0.52 -9.58 16 10 C 0.06 0.72 6.03 -3.54 -0.02 0.70 16 11 C 0.05 0.63 6.98 37.31 0.26 0.89 16 12 O -0.36 -5.91 9.22 -35.23 -0.32 -6.24 16 13 C 0.08 1.30 2.53 -26.58 -0.07 1.23 16 14 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 15 C 0.18 3.57 2.74 -67.93 -0.19 3.38 16 16 H 0.06 1.18 8.08 -51.93 -0.42 0.76 16 17 C -0.16 -2.93 9.35 37.16 0.35 -2.58 16 18 N -0.72 -17.46 4.28 -53.43 -0.23 -17.69 16 19 C -0.24 -6.49 9.93 -15.06 -0.15 -6.64 16 20 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 21 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 22 N -0.93 -27.75 13.06 55.49 0.72 -27.02 16 23 Si 0.90 22.35 29.55 -169.99 -5.02 17.33 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 25 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 26 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 27 C 0.09 1.52 5.85 -3.53 -0.02 1.50 16 28 S 0.19 1.76 19.91 -107.50 -2.14 -0.38 16 29 H 0.06 0.38 8.14 -51.92 -0.42 -0.05 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 32 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.18 1.97 8.06 -52.49 -0.42 1.54 16 35 H 0.09 0.87 4.11 -30.63 -0.13 0.74 16 36 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.06 1.08 7.68 -51.93 -0.40 0.68 16 40 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.39 10.24 7.20 -40.82 -0.29 9.95 16 43 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 44 H 0.10 2.07 7.26 -51.93 -0.38 1.69 16 45 H 0.10 1.78 7.11 -51.93 -0.37 1.41 16 LS Contribution 379.03 15.07 5.71 5.71 Total: -1.00 -32.90 379.03 -8.80 -41.69 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -6.60 Total: 7.44 kcal Atomic # 6 Polarization: 4.33 SS G_CDS: -0.35 Total: 3.98 kcal Atomic # 7 Polarization: -59.60 SS G_CDS: -0.15 Total: -59.75 kcal Atomic # 8 Polarization: -15.77 SS G_CDS: -0.24 Total: -16.01 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Atomic # 16 Polarization: 1.76 SS G_CDS: -2.14 Total: -0.38 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.90 -8.80 -41.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276820292.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.991 kcal (2) G-P(sol) polarization free energy of solvation -32.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds