Wall clock time and date at job start Tue Mar 31 2020 23:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50696 * 109.47485 * 2 1 4 4 N 1.29437 * 124.80706 * 89.97671 * 3 2 1 5 5 C 1.30937 * 117.36634 * 180.02562 * 4 3 2 6 6 C 1.35665 * 114.19387 * 0.02562 * 5 4 3 7 7 C 1.46675 * 126.12956 * 180.02562 * 6 5 4 8 8 O 1.21683 * 120.00281 * 42.69756 * 7 6 5 9 9 N 1.34784 * 119.99605 * 222.69775 * 7 6 5 10 10 C 1.47147 * 120.98434 * 356.30110 * 9 7 6 11 11 C 1.53294 * 108.38691 * 129.48889 * 10 9 7 12 12 O 1.42965 * 109.22395 * 52.29989 * 11 10 9 13 13 C 1.42960 * 114.16684 * 297.42777 * 12 11 10 14 14 H 1.09006 * 109.51028 * 302.60037 * 13 12 11 15 15 C 1.52999 * 109.51257 * 182.50239 * 13 12 11 16 16 H 1.08994 * 109.47343 * 179.97438 * 15 13 12 17 17 C 1.53005 * 109.47046 * 59.99364 * 15 13 12 18 18 N 1.46500 * 109.47080 * 299.99501 * 15 13 12 19 19 C 1.36928 * 120.00019 * 204.99694 * 18 15 13 20 20 H 1.08000 * 120.00277 * 0.02562 * 19 18 15 21 21 C 1.38815 * 119.99963 * 179.97438 * 19 18 15 22 22 N 1.31620 * 119.99795 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00042 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47102 * 90.00262 * 23 21 19 25 25 H 1.48503 * 109.46911 * 210.00332 * 23 21 19 26 26 H 1.48492 * 109.47149 * 330.00302 * 23 21 19 27 27 C 1.47155 * 120.97829 * 176.32838 * 9 7 6 28 28 S 1.70955 * 124.80678 * 270.29262 * 3 2 1 29 29 H 1.09008 * 109.47075 * 300.00074 * 1 2 3 30 30 H 1.09004 * 109.47041 * 59.99701 * 1 2 3 31 31 H 1.08993 * 109.47779 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47317 * 240.00082 * 2 1 3 33 33 H 1.08996 * 109.47332 * 120.00195 * 2 1 3 34 34 H 1.07998 * 122.90012 * 180.02562 * 5 4 3 35 35 H 1.09003 * 109.68024 * 9.76290 * 10 9 7 36 36 H 1.09000 * 109.68277 * 249.21230 * 10 9 7 37 37 H 1.09005 * 109.50890 * 292.38350 * 11 10 9 38 38 H 1.08995 * 109.55488 * 172.25415 * 11 10 9 39 39 H 1.08994 * 109.47102 * 300.00212 * 17 15 13 40 40 H 1.08994 * 109.46692 * 180.02562 * 17 15 13 41 41 H 1.09004 * 109.46792 * 60.00055 * 17 15 13 42 42 H 0.96998 * 119.99714 * 25.00244 * 18 15 13 43 43 H 0.97004 * 119.99866 * 179.97438 * 22 21 19 44 44 H 1.08997 * 109.68296 * 110.79337 * 27 9 7 45 45 H 1.08998 * 109.68452 * 350.23206 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.2783 2.1175 1.0628 5 6 2.7107 3.3417 0.8932 6 6 2.8406 3.7105 -0.4058 7 6 3.3019 5.0150 -0.8925 8 8 4.2529 5.5600 -0.3641 9 7 2.6723 5.6101 -1.9250 10 6 1.5721 4.9354 -2.6319 11 6 0.3841 5.9010 -2.7112 12 8 0.8244 7.1447 -3.2619 13 6 1.8045 7.8209 -2.4707 14 1 1.4080 7.9949 -1.4704 15 6 2.1522 9.1606 -3.1229 16 1 2.8991 9.6757 -2.5189 17 6 0.8920 10.0229 -3.2196 18 7 2.6873 8.9255 -4.4662 19 6 3.5207 9.8467 -5.0421 20 1 3.7839 10.7465 -4.5059 21 6 4.0281 9.6237 -6.3148 22 7 3.7078 8.5269 -6.9681 23 14 5.1656 10.8802 -7.1002 24 1 6.5732 10.5590 -6.7526 25 1 4.9994 10.8444 -8.5754 26 1 4.8285 12.2359 -6.5968 27 6 3.0653 6.9536 -2.3791 28 16 2.3509 2.3431 -1.4037 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.9438 4.0008 1.7164 35 1 1.2803 4.0384 -2.0856 36 1 1.8932 4.6651 -3.6378 37 1 -0.0172 6.0674 -1.7114 38 1 -0.3907 5.4747 -3.3483 39 1 0.1448 9.5080 -3.8233 40 1 1.1396 10.9771 -3.6845 41 1 0.4939 10.1978 -2.2200 42 1 2.4511 8.1172 -4.9477 43 1 4.0621 8.3712 -7.8576 44 1 3.5366 6.8864 -3.3596 45 1 3.7621 7.3931 -1.6655 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276820292.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:51 Heat of formation + Delta-G solvation = -37.169891 kcal Electronic energy + Delta-G solvation = -27643.328790 eV Core-core repulsion = 23787.560068 eV Total energy + Delta-G solvation = -3855.768722 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.72830 -40.77056 -39.54462 -37.14654 -35.91896 -34.98268 -34.18596 -32.02256 -31.04356 -30.14563 -28.92182 -27.04820 -25.91956 -25.15226 -24.21422 -23.64563 -22.07446 -21.23920 -19.89232 -19.63574 -19.27713 -18.09846 -17.80702 -17.30362 -16.89205 -16.35668 -16.31376 -15.92451 -15.81032 -15.69633 -15.38137 -15.10869 -14.98266 -14.77567 -14.55726 -14.25298 -14.02286 -13.54273 -13.38001 -13.18521 -13.05609 -12.76854 -12.76266 -12.59521 -12.56436 -12.50797 -12.17286 -12.06480 -11.89324 -11.70065 -11.66103 -11.30012 -11.14568 -10.94489 -10.79028 -10.46147 -9.97417 -9.73667 -8.94693 -7.89211 -5.16161 -0.83006 -0.04279 0.41991 1.30691 1.48464 1.49412 1.56628 1.57329 1.86813 2.58238 2.73944 2.95891 3.29627 3.44451 3.62463 3.83354 3.84837 3.89605 3.95085 4.04199 4.12368 4.21483 4.24639 4.27968 4.30967 4.47927 4.58835 4.66293 4.68627 4.75420 4.82803 4.94502 4.95100 5.01889 5.08202 5.09071 5.13497 5.23611 5.35958 5.55124 5.61266 6.03855 6.20824 6.32977 6.49652 6.74782 7.39993 8.15471 8.41099 9.33941 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019111 B = 0.002721 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.751714 B =10287.834156 C =10450.122499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.054 4.054 3 C 0.059 3.941 4 N -0.497 5.497 5 C 0.117 3.883 6 C -0.320 4.320 7 C 0.594 3.406 8 O -0.566 6.566 9 N -0.602 5.602 10 C 0.059 3.941 11 C 0.047 3.953 12 O -0.379 6.379 13 C 0.092 3.908 14 H 0.079 0.921 15 C 0.173 3.827 16 H 0.061 0.939 17 C -0.148 4.148 18 N -0.726 5.726 19 C -0.234 4.234 20 H 0.075 0.925 21 C -0.075 4.075 22 N -0.966 5.966 23 Si 0.966 3.034 24 H -0.291 1.291 25 H -0.298 1.298 26 H -0.270 1.270 27 C 0.097 3.903 28 S 0.223 5.777 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.090 0.910 32 H 0.112 0.888 33 H 0.103 0.897 34 H 0.187 0.813 35 H 0.112 0.888 36 H 0.084 0.916 37 H 0.067 0.933 38 H 0.134 0.866 39 H 0.046 0.954 40 H 0.038 0.962 41 H 0.067 0.933 42 H 0.378 0.622 43 H 0.248 0.752 44 H 0.065 0.935 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.873 -18.947 14.767 26.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.095 4.095 3 C -0.215 4.215 4 N -0.211 5.211 5 C -0.040 4.040 6 C -0.444 4.444 7 C 0.381 3.619 8 O -0.447 6.447 9 N -0.334 5.334 10 C -0.064 4.064 11 C -0.030 4.030 12 O -0.297 6.297 13 C 0.033 3.967 14 H 0.097 0.903 15 C 0.064 3.936 16 H 0.078 0.922 17 C -0.208 4.208 18 N -0.367 5.367 19 C -0.366 4.366 20 H 0.093 0.907 21 C -0.267 4.267 22 N -0.617 5.617 23 Si 0.796 3.204 24 H -0.219 1.219 25 H -0.224 1.224 26 H -0.195 1.195 27 C -0.026 4.026 28 S 0.481 5.519 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.109 0.891 32 H 0.130 0.870 33 H 0.121 0.879 34 H 0.203 0.797 35 H 0.129 0.871 36 H 0.102 0.898 37 H 0.085 0.915 38 H 0.152 0.848 39 H 0.065 0.935 40 H 0.058 0.942 41 H 0.086 0.914 42 H 0.211 0.789 43 H 0.057 0.943 44 H 0.084 0.916 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -10.509 -18.904 14.258 25.906 hybrid contribution 1.286 1.152 0.073 1.728 sum -9.223 -17.752 14.331 24.609 Atomic orbital electron populations 1.21795 0.92095 1.04090 1.02455 1.20570 0.97680 0.85089 1.06120 1.28353 0.98850 1.03016 0.91299 1.66302 1.16881 1.05743 1.32212 1.22197 0.94960 0.91853 0.95006 1.25442 1.19193 1.00670 0.99110 1.17152 0.81788 0.83651 0.79274 1.90818 1.28431 1.66302 1.59121 1.48125 1.35407 1.18021 1.31885 1.23020 0.87637 0.97288 0.98441 1.23161 0.95257 0.83680 1.00890 1.88082 1.58006 1.34592 1.49057 1.22660 0.87234 0.91996 0.94816 0.90289 1.20500 0.94624 0.91759 0.86675 0.92161 1.22171 0.98327 0.99372 1.00954 1.42485 1.55625 1.23869 1.14709 1.19608 1.18955 1.00170 0.97861 0.90703 1.25454 1.03301 0.99647 0.98286 1.69822 1.50371 1.27985 1.13525 0.85241 0.78766 0.79224 0.77152 1.21895 1.22438 1.19545 1.22188 0.98308 0.81555 1.00559 1.83973 1.56759 1.01337 1.09841 0.93001 0.91843 0.89140 0.86997 0.87863 0.79664 0.87068 0.89815 0.91508 0.84799 0.93487 0.94249 0.91399 0.78917 0.94286 0.91645 0.89560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.89 71.98 0.71 -0.25 16 2 C -0.05 -0.45 6.51 29.84 0.19 -0.26 16 3 C 0.06 0.93 6.64 88.46 0.59 1.52 16 4 N -0.50 -10.35 10.51 -190.30 -2.00 -12.35 16 5 C 0.12 2.69 11.29 84.23 0.95 3.64 16 6 C -0.32 -7.84 5.57 23.88 0.13 -7.70 16 7 C 0.59 18.74 7.58 86.44 0.66 19.39 16 8 O -0.57 -22.18 16.57 -4.29 -0.07 -22.25 16 9 N -0.60 -18.16 3.02 -822.06 -2.48 -20.64 16 10 C 0.06 1.36 6.03 86.35 0.52 1.88 16 11 C 0.05 1.05 6.98 72.08 0.50 1.55 16 12 O -0.38 -12.19 9.22 -148.98 -1.37 -13.57 16 13 C 0.09 3.05 2.53 30.69 0.08 3.12 16 14 H 0.08 2.27 8.14 -2.38 -0.02 2.25 16 15 C 0.17 6.76 2.74 44.99 0.12 6.89 16 16 H 0.06 2.35 8.08 -2.39 -0.02 2.33 16 17 C -0.15 -5.25 9.35 71.98 0.67 -4.57 16 18 N -0.73 -36.07 4.28 -322.94 -1.38 -37.45 16 19 C -0.23 -12.88 9.93 84.04 0.83 -12.05 16 20 H 0.08 3.97 7.83 -2.91 -0.02 3.94 16 21 C -0.07 -4.29 5.50 84.86 0.47 -3.82 16 22 N -0.97 -59.16 13.06 21.65 0.28 -58.87 16 23 Si 0.97 46.68 29.55 68.60 2.03 48.71 16 24 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 25 H -0.30 -14.51 7.11 99.48 0.71 -13.81 16 26 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 27 C 0.10 3.45 5.85 86.35 0.51 3.96 16 28 S 0.22 3.74 19.91 -56.49 -1.12 2.62 16 29 H 0.05 0.48 8.14 -2.38 -0.02 0.46 16 30 H 0.06 0.39 8.14 -2.38 -0.02 0.37 16 31 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16 32 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.19 3.97 8.06 -2.91 -0.02 3.94 16 35 H 0.11 1.99 4.11 -15.92 -0.07 1.92 16 36 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 38 H 0.13 2.21 8.14 -2.39 -0.02 2.19 16 39 H 0.05 1.74 7.68 -2.39 -0.02 1.72 16 40 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 42 H 0.38 20.48 7.20 -92.71 -0.67 19.81 16 43 H 0.25 14.83 8.31 -92.70 -0.77 14.06 16 44 H 0.07 2.82 7.26 -2.39 -0.02 2.80 16 45 H 0.09 3.26 7.11 -2.39 -0.02 3.24 16 Total: -1.00 -73.16 379.03 1.10 -72.06 By element: Atomic # 1 Polarization: 28.16 SS G_CDS: 0.29 Total: 28.44 kcal Atomic # 6 Polarization: 6.37 SS G_CDS: 6.94 Total: 13.30 kcal Atomic # 7 Polarization: -123.74 SS G_CDS: -5.58 Total: -129.32 kcal Atomic # 8 Polarization: -34.38 SS G_CDS: -1.45 Total: -35.82 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.71 kcal Atomic # 16 Polarization: 3.74 SS G_CDS: -1.12 Total: 2.62 kcal Total: -73.16 1.10 -72.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276820292.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.893 kcal (2) G-P(sol) polarization free energy of solvation -73.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds