Wall clock time and date at job start Tue Mar 31 2020 22:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29026 * 124.91444 * 2 1 4 4 C 1.31783 * 117.12412 * 180.02562 * 3 2 1 5 5 C 1.50700 * 122.74849 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.47359 * 305.01967 * 5 4 3 7 7 O 1.21280 * 119.99406 * 0.02562 * 6 5 4 8 8 N 1.34769 * 120.00314 * 180.02562 * 6 5 4 9 9 C 1.46501 * 120.00067 * 174.56001 * 8 6 5 10 10 C 1.52995 * 109.54390 * 64.25119 * 9 8 6 11 11 N 1.46498 * 109.47255 * 54.82312 * 10 9 8 12 12 C 1.36939 * 119.99929 * 184.97683 * 11 10 9 13 13 H 1.07997 * 120.00285 * 5.00478 * 12 11 10 14 14 C 1.38808 * 119.99832 * 184.99646 * 12 11 10 15 15 N 1.31624 * 120.00276 * 184.93819 * 14 12 11 16 16 Si 1.86800 * 120.00298 * 4.94014 * 14 12 11 17 17 H 1.48491 * 109.47241 * 94.83065 * 16 14 12 18 18 H 1.48504 * 109.47166 * 214.83529 * 16 14 12 19 19 H 1.48499 * 109.46978 * 334.82917 * 16 14 12 20 20 C 1.53173 * 109.54262 * 184.42812 * 9 8 6 21 21 C 1.53106 * 109.15888 * 63.06056 * 20 9 8 22 22 O 1.42904 * 109.48753 * 57.47519 * 21 20 9 23 23 C 1.42911 * 114.09695 * 298.89424 * 22 21 20 24 24 C 1.53084 * 109.41714 * 61.15055 * 23 22 21 25 25 C 1.33635 * 114.49988 * 0.22676 * 4 3 2 26 26 S 1.70978 * 124.91912 * 179.97438 * 2 1 3 27 27 H 1.09000 * 109.47058 * 90.00056 * 1 2 3 28 28 H 1.09002 * 109.46970 * 210.00257 * 1 2 3 29 29 H 1.08999 * 109.47066 * 329.99943 * 1 2 3 30 30 H 1.09007 * 109.47011 * 185.02049 * 5 4 3 31 31 H 1.09001 * 109.47517 * 65.02550 * 5 4 3 32 32 H 0.97000 * 120.00089 * 354.55278 * 8 6 5 33 33 H 1.08999 * 109.46898 * 174.82193 * 10 9 8 34 34 H 1.09000 * 109.47198 * 294.82218 * 10 9 8 35 35 H 0.96996 * 119.99972 * 4.98806 * 11 10 9 36 36 H 0.96998 * 120.00562 * 180.02562 * 15 14 12 37 37 H 1.09000 * 109.52511 * 182.87659 * 20 9 8 38 38 H 1.09003 * 109.52597 * 303.06762 * 20 9 8 39 39 H 1.08992 * 109.40778 * 297.49395 * 21 20 9 40 40 H 1.09003 * 109.49528 * 177.50412 * 21 20 9 41 41 H 1.09008 * 109.47245 * 301.17209 * 23 22 21 42 42 H 1.08994 * 109.49028 * 181.14942 * 23 22 21 43 43 H 1.08997 * 109.52579 * 182.48842 * 24 23 22 44 44 H 1.09007 * 109.57265 * 62.33490 * 24 23 22 45 45 H 1.08001 * 126.03786 * 179.77460 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5511 0.8794 -0.0005 5 6 4.5306 2.0247 -0.0012 6 6 4.2370 2.9362 -1.1648 7 8 3.3221 2.6811 -1.9190 8 7 4.9911 4.0347 -1.3673 9 6 4.7835 4.8554 -2.5630 10 6 3.3838 5.4719 -2.5240 11 7 3.2093 6.2082 -1.2696 12 6 1.9947 6.7622 -0.9642 13 1 1.1448 6.5884 -1.6074 14 6 1.8560 7.5469 0.1724 15 7 0.6695 7.9991 0.5192 16 14 3.3531 7.9614 1.2098 17 1 3.8948 9.2796 0.7927 18 1 2.9632 8.0170 2.6416 19 1 4.3915 6.9170 1.0197 20 6 5.8332 5.9700 -2.6079 21 6 7.2255 5.3445 -2.7283 22 8 7.2791 4.5216 -3.8954 23 6 6.3520 3.4342 -3.8858 24 6 4.9247 3.9829 -3.8140 25 6 3.9354 -0.4005 -0.0058 26 16 2.4857 -1.4019 0.0006 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5138 30 1 5.5448 1.6353 -0.0915 31 1 4.4375 2.5830 0.9303 32 1 5.6711 4.2820 -0.7213 33 1 3.2638 6.1541 -3.3655 34 1 2.6365 4.6809 -2.5880 35 1 3.9540 6.3036 -0.6555 36 1 0.5725 8.5478 1.3132 37 1 5.6475 6.6108 -3.4698 38 1 5.7760 6.5614 -1.6941 39 1 7.4273 4.7373 -1.8459 40 1 7.9734 6.1336 -2.8053 41 1 6.5424 2.8020 -3.0184 42 1 6.4705 2.8471 -4.7964 43 1 4.2181 3.1546 -3.7620 44 1 4.7188 4.5821 -4.7011 45 1 4.9545 -0.7580 -0.0106 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281282409.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:34 Heat of formation + Delta-G solvation = -16.266502 kcal Electronic energy + Delta-G solvation = -28583.827787 eV Core-core repulsion = 24728.965504 eV Total energy + Delta-G solvation = -3854.862283 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.70236 -39.82115 -38.16090 -35.85713 -33.69905 -33.14895 -31.80908 -31.16391 -30.74418 -29.42504 -27.81923 -26.79430 -23.75713 -23.51403 -22.97817 -21.32663 -20.98257 -19.63518 -19.12009 -17.91832 -17.70790 -16.84416 -16.17823 -16.00748 -15.59755 -15.24342 -15.05802 -14.77402 -14.50887 -14.33309 -13.88457 -13.69527 -13.55249 -13.31966 -13.12488 -12.77339 -12.66159 -12.52974 -12.39935 -12.21111 -12.15127 -11.80510 -11.72324 -11.41271 -11.25373 -11.11448 -10.88921 -10.58294 -10.35212 -10.11449 -9.65732 -9.53659 -9.49813 -9.39655 -9.26834 -8.80554 -8.69706 -8.60194 -7.11243 -5.69830 -3.03112 0.70500 1.34877 1.68965 2.78891 2.98124 3.30992 3.38043 3.44126 3.47348 3.86629 4.04950 4.61959 4.65439 4.77043 4.89413 4.97187 4.98517 5.03008 5.09267 5.13528 5.21821 5.28769 5.36017 5.37385 5.46432 5.60076 5.62685 5.64779 5.70698 5.76408 5.88705 5.94217 5.98962 6.10130 6.15134 6.20167 6.31689 6.48068 6.84745 7.01387 7.17093 7.77490 7.87990 8.09612 8.48987 8.58219 9.29428 10.01050 10.22370 11.49305 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008503 B = 0.004812 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3292.210162 B = 5817.213992 C = 8120.106969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.060 3.940 3 N -0.438 5.438 4 C 0.099 3.901 5 C -0.071 4.071 6 C 0.525 3.475 7 O -0.507 6.507 8 N -0.721 5.721 9 C 0.173 3.827 10 C 0.149 3.851 11 N -0.748 5.748 12 C -0.230 4.230 13 H 0.088 0.912 14 C 0.001 3.999 15 N -0.936 5.936 16 Si 0.888 3.112 17 H -0.286 1.286 18 H -0.293 1.293 19 H -0.283 1.283 20 C -0.157 4.157 21 C 0.062 3.938 22 O -0.385 6.385 23 C 0.067 3.933 24 C -0.164 4.164 25 C -0.265 4.265 26 S 0.091 5.909 27 H 0.087 0.913 28 H 0.078 0.922 29 H 0.093 0.907 30 H 0.104 0.896 31 H 0.110 0.890 32 H 0.393 0.607 33 H 0.026 0.974 34 H 0.055 0.945 35 H 0.358 0.642 36 H 0.257 0.743 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.046 0.954 40 H 0.093 0.907 41 H 0.046 0.954 42 H 0.089 0.911 43 H 0.097 0.903 44 H 0.079 0.921 45 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.310 -18.333 -2.490 22.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.219 4.219 3 N -0.151 5.151 4 C -0.034 4.034 5 C -0.114 4.114 6 C 0.310 3.690 7 O -0.381 6.381 8 N -0.374 5.374 9 C 0.087 3.913 10 C 0.021 3.979 11 N -0.394 5.394 12 C -0.361 4.361 13 H 0.105 0.895 14 C -0.194 4.194 15 N -0.584 5.584 16 Si 0.719 3.281 17 H -0.213 1.213 18 H -0.219 1.219 19 H -0.210 1.210 20 C -0.195 4.195 21 C -0.015 4.015 22 O -0.303 6.303 23 C -0.009 4.009 24 C -0.203 4.203 25 C -0.403 4.403 26 S 0.346 5.654 27 H 0.105 0.895 28 H 0.096 0.904 29 H 0.111 0.889 30 H 0.123 0.877 31 H 0.128 0.872 32 H 0.227 0.773 33 H 0.044 0.956 34 H 0.073 0.927 35 H 0.192 0.808 36 H 0.067 0.933 37 H 0.108 0.892 38 H 0.101 0.899 39 H 0.065 0.935 40 H 0.111 0.889 41 H 0.064 0.936 42 H 0.107 0.893 43 H 0.116 0.884 44 H 0.098 0.902 45 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 11.049 -19.002 -3.232 22.217 hybrid contribution 1.741 1.233 1.532 2.626 sum 12.790 -17.768 -1.700 21.959 Atomic orbital electron populations 1.20467 0.85187 1.04162 1.04099 1.27096 1.01864 0.90142 1.02790 1.66052 1.04162 1.30874 1.14024 1.19550 0.90101 0.92830 1.00941 1.20271 0.97471 0.93689 0.99954 1.19991 0.81779 0.81241 0.85962 1.90676 1.27826 1.73028 1.46537 1.45941 1.39517 1.27002 1.24926 1.20593 0.96740 0.89680 0.84258 1.21036 0.92782 0.94637 0.89423 1.42615 1.11545 1.65424 1.19860 1.19056 0.87549 1.22275 1.07180 0.89466 1.24658 0.96100 1.00473 0.98158 1.69712 1.20963 1.40524 1.27244 0.86503 0.83356 0.77997 0.80245 1.21341 1.21933 1.20972 1.22463 0.94316 0.98064 1.04639 1.22578 0.96920 0.93932 0.88043 1.87904 1.59165 1.41913 1.41352 1.22503 0.88391 0.88519 1.01525 1.22535 0.98018 1.02003 0.97724 1.26656 1.02907 0.95623 1.15157 1.83786 0.98239 1.13771 1.69622 0.89452 0.90358 0.88850 0.87747 0.87199 0.77324 0.95637 0.92731 0.80825 0.93258 0.89186 0.89945 0.93544 0.88851 0.93582 0.89256 0.88448 0.90249 0.80838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.85 10.46 36.00 0.38 -0.48 16 2 C 0.06 0.83 7.39 -13.46 -0.10 0.73 16 3 N -0.44 -7.39 9.68 -8.06 -0.08 -7.47 16 4 C 0.10 1.41 5.64 -84.23 -0.47 0.93 16 5 C -0.07 -0.89 6.20 -29.03 -0.18 -1.07 16 6 C 0.53 8.34 7.20 -10.99 -0.08 8.26 16 7 O -0.51 -9.99 11.75 5.56 0.07 -9.92 16 8 N -0.72 -10.34 3.68 -47.44 -0.17 -10.51 16 9 C 0.17 2.69 0.32 -131.64 -0.04 2.65 16 10 C 0.15 3.09 4.95 -4.05 -0.02 3.07 16 11 N -0.75 -18.08 4.99 -59.91 -0.30 -18.37 16 12 C -0.23 -6.76 10.47 -15.06 -0.16 -6.92 16 13 H 0.09 2.80 8.06 -52.49 -0.42 2.38 16 14 C 0.00 0.03 5.50 -17.43 -0.10 -0.06 16 15 N -0.94 -30.17 13.97 55.49 0.78 -29.40 16 16 Si 0.89 22.32 28.02 -169.99 -4.76 17.56 16 17 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 18 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 19 H -0.28 -6.44 6.14 56.52 0.35 -6.09 16 20 C -0.16 -2.14 4.79 -26.59 -0.13 -2.27 16 21 C 0.06 0.70 6.67 37.21 0.25 0.95 16 22 O -0.38 -4.93 10.77 -35.23 -0.38 -5.30 16 23 C 0.07 0.81 6.68 37.20 0.25 1.06 16 24 C -0.16 -2.32 4.70 -26.60 -0.13 -2.44 16 25 C -0.26 -2.99 11.07 29.12 0.32 -2.67 16 26 S 0.09 0.98 23.18 -107.50 -2.49 -1.51 16 27 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.10 0.87 8.03 -51.92 -0.42 0.45 16 31 H 0.11 1.34 8.14 -51.93 -0.42 0.92 16 32 H 0.39 4.66 7.69 -40.82 -0.31 4.35 16 33 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.05 1.30 6.46 -51.93 -0.34 0.96 16 35 H 0.36 8.23 4.23 -40.82 -0.17 8.06 16 36 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 37 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.08 1.19 7.20 -51.93 -0.37 0.82 16 39 H 0.05 0.46 7.20 -51.93 -0.37 0.08 16 40 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.05 0.53 7.75 -51.92 -0.40 0.12 16 42 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.10 1.55 5.99 -51.93 -0.31 1.24 16 44 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.17 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 370.65 15.07 5.59 5.59 Total: -1.00 -37.16 370.65 -8.50 -45.67 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: -6.54 Total: 11.93 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: -0.20 Total: 1.74 kcal Atomic # 7 Polarization: -65.97 SS G_CDS: 0.22 Total: -65.75 kcal Atomic # 8 Polarization: -14.91 SS G_CDS: -0.31 Total: -15.22 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.76 Total: 17.56 kcal Atomic # 16 Polarization: 0.98 SS G_CDS: -2.49 Total: -1.51 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -37.16 -8.50 -45.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281282409.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.403 kcal (2) G-P(sol) polarization free energy of solvation -37.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds