Wall clock time and date at job start Tue Mar 31 2020 22:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29026 * 124.91444 * 2 1 4 4 C 1.31783 * 117.12412 * 180.02562 * 3 2 1 5 5 C 1.50700 * 122.74849 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.47359 * 305.01967 * 5 4 3 7 7 O 1.21280 * 119.99406 * 0.02562 * 6 5 4 8 8 N 1.34769 * 120.00314 * 180.02562 * 6 5 4 9 9 C 1.46501 * 120.00067 * 174.56001 * 8 6 5 10 10 C 1.52995 * 109.54390 * 64.25119 * 9 8 6 11 11 N 1.46498 * 109.47255 * 54.82312 * 10 9 8 12 12 C 1.36939 * 119.99929 * 184.97683 * 11 10 9 13 13 H 1.07997 * 120.00285 * 5.00478 * 12 11 10 14 14 C 1.38808 * 119.99832 * 184.99646 * 12 11 10 15 15 N 1.31624 * 120.00276 * 184.93819 * 14 12 11 16 16 Si 1.86800 * 120.00298 * 4.94014 * 14 12 11 17 17 H 1.48491 * 109.47241 * 94.83065 * 16 14 12 18 18 H 1.48504 * 109.47166 * 214.83529 * 16 14 12 19 19 H 1.48499 * 109.46978 * 334.82917 * 16 14 12 20 20 C 1.53173 * 109.54262 * 184.42812 * 9 8 6 21 21 C 1.53106 * 109.15888 * 63.06056 * 20 9 8 22 22 O 1.42904 * 109.48753 * 57.47519 * 21 20 9 23 23 C 1.42911 * 114.09695 * 298.89424 * 22 21 20 24 24 C 1.53084 * 109.41714 * 61.15055 * 23 22 21 25 25 C 1.33635 * 114.49988 * 0.22676 * 4 3 2 26 26 S 1.70978 * 124.91912 * 179.97438 * 2 1 3 27 27 H 1.09000 * 109.47058 * 90.00056 * 1 2 3 28 28 H 1.09002 * 109.46970 * 210.00257 * 1 2 3 29 29 H 1.08999 * 109.47066 * 329.99943 * 1 2 3 30 30 H 1.09007 * 109.47011 * 185.02049 * 5 4 3 31 31 H 1.09001 * 109.47517 * 65.02550 * 5 4 3 32 32 H 0.97000 * 120.00089 * 354.55278 * 8 6 5 33 33 H 1.08999 * 109.46898 * 174.82193 * 10 9 8 34 34 H 1.09000 * 109.47198 * 294.82218 * 10 9 8 35 35 H 0.96996 * 119.99972 * 4.98806 * 11 10 9 36 36 H 0.96998 * 120.00562 * 180.02562 * 15 14 12 37 37 H 1.09000 * 109.52511 * 182.87659 * 20 9 8 38 38 H 1.09003 * 109.52597 * 303.06762 * 20 9 8 39 39 H 1.08992 * 109.40778 * 297.49395 * 21 20 9 40 40 H 1.09003 * 109.49528 * 177.50412 * 21 20 9 41 41 H 1.09008 * 109.47245 * 301.17209 * 23 22 21 42 42 H 1.08994 * 109.49028 * 181.14942 * 23 22 21 43 43 H 1.08997 * 109.52579 * 182.48842 * 24 23 22 44 44 H 1.09007 * 109.57265 * 62.33490 * 24 23 22 45 45 H 1.08001 * 126.03786 * 179.77460 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5511 0.8794 -0.0005 5 6 4.5306 2.0247 -0.0012 6 6 4.2370 2.9362 -1.1648 7 8 3.3221 2.6811 -1.9190 8 7 4.9911 4.0347 -1.3673 9 6 4.7835 4.8554 -2.5630 10 6 3.3838 5.4719 -2.5240 11 7 3.2093 6.2082 -1.2696 12 6 1.9947 6.7622 -0.9642 13 1 1.1448 6.5884 -1.6074 14 6 1.8560 7.5469 0.1724 15 7 0.6695 7.9991 0.5192 16 14 3.3531 7.9614 1.2098 17 1 3.8948 9.2796 0.7927 18 1 2.9632 8.0170 2.6416 19 1 4.3915 6.9170 1.0197 20 6 5.8332 5.9700 -2.6079 21 6 7.2255 5.3445 -2.7283 22 8 7.2791 4.5216 -3.8954 23 6 6.3520 3.4342 -3.8858 24 6 4.9247 3.9829 -3.8140 25 6 3.9354 -0.4005 -0.0058 26 16 2.4857 -1.4019 0.0006 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5138 30 1 5.5448 1.6353 -0.0915 31 1 4.4375 2.5830 0.9303 32 1 5.6711 4.2820 -0.7213 33 1 3.2638 6.1541 -3.3655 34 1 2.6365 4.6809 -2.5880 35 1 3.9540 6.3036 -0.6555 36 1 0.5725 8.5478 1.3132 37 1 5.6475 6.6108 -3.4698 38 1 5.7760 6.5614 -1.6941 39 1 7.4273 4.7373 -1.8459 40 1 7.9734 6.1336 -2.8053 41 1 6.5424 2.8020 -3.0184 42 1 6.4705 2.8471 -4.7964 43 1 4.2181 3.1546 -3.7620 44 1 4.7188 4.5821 -4.7011 45 1 4.9545 -0.7580 -0.0106 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281282409.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:33 Heat of formation + Delta-G solvation = -44.943642 kcal Electronic energy + Delta-G solvation = -28585.071321 eV Core-core repulsion = 24728.965504 eV Total energy + Delta-G solvation = -3856.105817 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.86203 -40.81663 -39.26000 -37.33622 -35.49069 -34.16400 -33.37394 -32.56550 -32.09833 -30.38040 -28.78821 -28.40517 -25.20460 -24.74180 -24.05667 -23.00780 -22.08114 -20.57309 -20.44343 -19.79469 -18.91323 -17.91480 -17.28019 -16.98933 -16.79041 -16.50082 -16.42820 -16.00066 -15.85240 -15.47457 -15.26905 -14.97108 -14.90766 -14.61418 -14.37929 -14.20092 -13.94351 -13.73994 -13.52210 -13.37541 -13.21690 -13.05110 -12.95420 -12.87430 -12.75907 -12.32055 -12.30100 -12.10505 -11.88080 -11.68214 -11.39263 -11.05515 -10.69058 -10.50321 -10.42249 -10.27051 -9.89762 -9.59209 -9.27999 -8.04303 -5.37643 -0.20631 0.48679 0.78128 1.28523 1.39544 1.45632 1.77103 1.81008 2.36176 2.46106 2.96571 3.18589 3.25770 3.45220 3.66964 3.82273 3.83661 3.93313 4.07264 4.10167 4.17212 4.28338 4.37322 4.43205 4.47044 4.51108 4.60154 4.62351 4.72884 4.78999 4.81689 4.82690 4.84025 4.99835 5.07043 5.09886 5.12157 5.17293 5.24578 5.64234 5.73329 6.18138 6.25587 6.67072 6.96369 7.06044 7.43669 7.79000 8.05342 9.18277 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008503 B = 0.004812 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3292.210162 B = 5817.213992 C = 8120.106969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.025 3.975 3 N -0.497 5.497 4 C 0.062 3.938 5 C -0.065 4.065 6 C 0.517 3.483 7 O -0.553 6.553 8 N -0.712 5.712 9 C 0.181 3.819 10 C 0.151 3.849 11 N -0.740 5.740 12 C -0.234 4.234 13 H 0.036 0.964 14 C -0.067 4.067 15 N -0.988 5.988 16 Si 0.966 3.034 17 H -0.276 1.276 18 H -0.296 1.296 19 H -0.241 1.241 20 C -0.153 4.153 21 C 0.065 3.935 22 O -0.393 6.393 23 C 0.076 3.924 24 C -0.158 4.158 25 C -0.252 4.252 26 S 0.153 5.847 27 H 0.087 0.913 28 H 0.110 0.890 29 H 0.071 0.929 30 H 0.153 0.847 31 H 0.111 0.889 32 H 0.409 0.591 33 H 0.017 0.983 34 H 0.017 0.983 35 H 0.369 0.631 36 H 0.258 0.742 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.069 0.931 40 H 0.115 0.885 41 H 0.059 0.941 42 H 0.104 0.896 43 H 0.075 0.925 44 H 0.074 0.926 45 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.980 -20.088 -1.403 26.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.253 4.253 3 N -0.212 5.212 4 C -0.071 4.071 5 C -0.107 4.107 6 C 0.304 3.696 7 O -0.430 6.430 8 N -0.366 5.366 9 C 0.095 3.905 10 C 0.023 3.977 11 N -0.387 5.387 12 C -0.365 4.365 13 H 0.054 0.946 14 C -0.258 4.258 15 N -0.638 5.638 16 Si 0.792 3.208 17 H -0.202 1.202 18 H -0.223 1.223 19 H -0.166 1.166 20 C -0.192 4.192 21 C -0.011 4.011 22 O -0.311 6.311 23 C -0.001 4.001 24 C -0.197 4.197 25 C -0.391 4.391 26 S 0.408 5.592 27 H 0.105 0.895 28 H 0.128 0.872 29 H 0.090 0.910 30 H 0.171 0.829 31 H 0.129 0.871 32 H 0.246 0.754 33 H 0.035 0.965 34 H 0.035 0.965 35 H 0.204 0.796 36 H 0.066 0.934 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.087 0.913 40 H 0.133 0.867 41 H 0.077 0.923 42 H 0.122 0.878 43 H 0.093 0.907 44 H 0.092 0.908 45 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 15.770 -20.783 -2.157 26.178 hybrid contribution 0.120 1.698 1.107 2.030 sum 15.890 -19.085 -1.050 24.856 Atomic orbital electron populations 1.20539 0.84445 1.04684 1.04254 1.27434 1.02987 0.91421 1.03453 1.66053 1.06058 1.33338 1.15761 1.19859 0.89652 0.94504 1.03043 1.20373 0.99646 0.92790 0.97915 1.20733 0.80961 0.81611 0.86342 1.90672 1.29759 1.74113 1.48426 1.45867 1.39615 1.26333 1.24815 1.20376 0.93774 0.90672 0.85702 1.21048 0.95895 0.93109 0.87638 1.42406 1.09903 1.65193 1.21155 1.18927 0.88172 1.22708 1.06660 0.94561 1.25626 1.00085 1.00292 0.99820 1.69935 1.24193 1.41558 1.28121 0.85249 0.79410 0.78991 0.77107 1.20205 1.22307 1.16578 1.22448 0.95348 0.97136 1.04224 1.22705 0.95293 0.94600 0.88505 1.87911 1.58853 1.42118 1.42268 1.22483 0.86210 0.88456 1.02948 1.22446 0.99617 1.00901 0.96722 1.27150 1.04895 0.94781 1.12297 1.83470 0.96741 1.11138 1.67853 0.89459 0.87186 0.90988 0.82889 0.87092 0.75401 0.96493 0.96534 0.79624 0.93358 0.89909 0.90210 0.91256 0.86656 0.92299 0.87766 0.90654 0.90765 0.77112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.80 10.46 71.24 0.75 -1.05 16 2 C 0.02 0.69 7.39 88.52 0.65 1.35 16 3 N -0.50 -17.20 9.68 -179.41 -1.74 -18.94 16 4 C 0.06 1.68 5.64 41.52 0.23 1.92 16 5 C -0.07 -1.49 6.20 29.10 0.18 -1.30 16 6 C 0.52 16.02 7.20 87.66 0.63 16.65 16 7 O -0.55 -22.59 11.75 -3.03 -0.04 -22.63 16 8 N -0.71 -19.06 3.68 -422.41 -1.55 -20.62 16 9 C 0.18 5.50 0.32 3.72 0.00 5.50 16 10 C 0.15 6.52 4.95 86.38 0.43 6.95 16 11 N -0.74 -36.33 4.99 -343.47 -1.71 -38.04 16 12 C -0.23 -14.35 10.47 84.03 0.88 -13.47 16 13 H 0.04 2.53 8.06 -2.91 -0.02 2.51 16 14 C -0.07 -4.14 5.50 84.86 0.47 -3.68 16 15 N -0.99 -66.18 13.97 21.65 0.30 -65.88 16 16 Si 0.97 45.74 28.02 68.60 1.92 47.67 16 17 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 18 H -0.30 -14.22 7.11 99.48 0.71 -13.52 16 19 H -0.24 -9.65 6.14 99.48 0.61 -9.04 16 20 C -0.15 -3.82 4.79 30.69 0.15 -3.68 16 21 C 0.07 1.20 6.67 72.02 0.48 1.68 16 22 O -0.39 -8.63 10.77 -148.98 -1.60 -10.23 16 23 C 0.08 1.60 6.68 72.01 0.48 2.09 16 24 C -0.16 -4.40 4.70 30.68 0.14 -4.25 16 25 C -0.25 -4.97 11.07 66.78 0.74 -4.23 16 26 S 0.15 2.97 23.18 -56.49 -1.31 1.66 16 27 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.15 1.83 8.03 -2.38 -0.02 1.81 16 31 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 32 H 0.41 8.17 7.69 -92.71 -0.71 7.45 16 33 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.02 0.85 6.46 -2.39 -0.02 0.83 16 35 H 0.37 16.37 4.23 -92.71 -0.39 15.97 16 36 H 0.26 16.29 8.31 -92.71 -0.77 15.52 16 37 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 38 H 0.08 2.05 7.20 -2.39 -0.02 2.03 16 39 H 0.07 0.99 7.20 -2.39 -0.02 0.97 16 40 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.06 1.12 7.75 -2.38 -0.02 1.10 16 42 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 43 H 0.07 2.48 5.99 -2.39 -0.01 2.46 16 44 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 45 H 0.21 2.33 8.06 -2.91 -0.02 2.30 16 Total: -1.00 -87.98 370.65 0.31 -87.67 By element: Atomic # 1 Polarization: 35.06 SS G_CDS: -0.17 Total: 34.89 kcal Atomic # 6 Polarization: -1.75 SS G_CDS: 6.21 Total: 4.46 kcal Atomic # 7 Polarization: -138.78 SS G_CDS: -4.70 Total: -143.48 kcal Atomic # 8 Polarization: -31.22 SS G_CDS: -1.64 Total: -32.86 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 1.92 Total: 47.67 kcal Atomic # 16 Polarization: 2.97 SS G_CDS: -1.31 Total: 1.66 kcal Total: -87.98 0.31 -87.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281282409.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.723 kcal (2) G-P(sol) polarization free energy of solvation -87.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds