Wall clock time and date at job start Tue Mar 31 2020 23:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30250 * 125.62048 * 2 1 4 4 C 1.34484 * 108.70027 * 179.97438 * 3 2 1 5 5 C 1.34330 * 107.66836 * 0.27078 * 4 3 2 6 6 C 1.50694 * 126.44286 * 179.73187 * 5 4 3 7 7 N 1.46908 * 109.47163 * 89.99663 * 6 5 4 8 8 C 1.46900 * 111.00016 * 179.97438 * 7 6 5 9 9 C 1.53000 * 109.46938 * 179.97438 * 8 7 6 10 10 H 1.08995 * 112.84921 * 314.66985 * 9 8 7 11 11 C 1.53785 * 113.61235 * 85.86534 * 9 8 7 12 12 C 1.53955 * 87.01826 * 139.94935 * 11 9 8 13 13 H 1.09001 * 113.74420 * 220.05331 * 12 11 9 14 14 N 1.46501 * 113.53536 * 89.18716 * 12 11 9 15 15 C 1.34783 * 119.99595 * 107.50269 * 14 12 11 16 16 O 1.21280 * 120.00157 * 0.02562 * 15 14 12 17 17 C 1.50700 * 119.99897 * 179.97438 * 15 14 12 18 18 S 1.80991 * 109.47347 * 180.02562 * 17 15 14 19 19 C 1.76196 * 100.00154 * 180.02562 * 18 17 15 20 20 H 1.07995 * 120.00176 * 359.97438 * 19 18 17 21 21 C 1.38801 * 119.99846 * 180.02562 * 19 18 17 22 22 N 1.31627 * 120.00246 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99877 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47117 * 89.99799 * 23 21 19 25 25 H 1.48499 * 109.47339 * 209.99680 * 23 21 19 26 26 H 1.48503 * 109.47160 * 329.99842 * 23 21 19 27 27 C 1.53780 * 87.11313 * 334.63923 * 12 11 9 28 28 O 1.33972 * 125.61724 * 179.97438 * 2 1 3 29 29 H 1.09001 * 109.47097 * 90.02027 * 1 2 3 30 30 H 1.09007 * 109.47129 * 210.02172 * 1 2 3 31 31 H 1.08997 * 109.46764 * 330.01876 * 1 2 3 32 32 H 1.08002 * 126.16218 * 179.97438 * 4 3 2 33 33 H 1.09001 * 109.47520 * 209.99424 * 6 5 4 34 34 H 1.09003 * 109.47512 * 329.99686 * 6 5 4 35 35 H 1.00903 * 110.99653 * 56.04531 * 7 6 5 36 36 H 1.08997 * 109.47381 * 299.99914 * 8 7 6 37 37 H 1.09004 * 109.47126 * 60.00133 * 8 7 6 38 38 H 1.08997 * 113.61325 * 254.53038 * 11 9 8 39 39 H 1.09000 * 113.61425 * 25.43189 * 11 9 8 40 40 H 0.96992 * 120.00247 * 287.50702 * 14 12 11 41 41 H 1.09008 * 109.46647 * 300.00285 * 17 15 14 42 42 H 1.09003 * 109.47249 * 59.99822 * 17 15 14 43 43 H 0.97000 * 120.00137 * 180.02562 * 22 21 19 44 44 H 1.09005 * 113.61489 * 270.81260 * 27 12 11 45 45 H 1.09000 * 113.69622 * 139.92250 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5522 0.6674 0.0006 5 6 3.5698 -0.6758 -0.0051 6 6 4.7936 -1.5550 -0.0124 7 7 5.1954 -1.8465 1.3703 8 6 6.3878 -2.7039 1.4023 9 6 6.7753 -2.9844 2.8556 10 1 6.7548 -2.0906 3.4792 11 6 6.0324 -4.1820 3.4710 12 6 7.3644 -4.5593 4.1446 13 1 7.5651 -5.6307 4.1508 14 7 7.5525 -3.9377 5.4578 15 6 7.4586 -4.6840 6.5762 16 8 7.2188 -5.8701 6.4955 17 6 7.6527 -4.0448 7.9271 18 16 7.4670 -5.2979 9.2198 19 6 7.7349 -4.3041 10.6499 20 1 7.9399 -3.2492 10.5438 21 6 7.6834 -4.8775 11.9130 22 7 7.4340 -6.1634 12.0424 23 14 7.9667 -3.8238 13.4292 24 1 6.6700 -3.2728 13.8984 25 1 8.5695 -4.6536 14.5031 26 1 8.8857 -2.7073 13.0915 27 6 8.0660 -3.8076 3.0012 28 8 2.2872 -1.0891 0.0005 29 1 -0.3633 -0.0004 -1.0277 30 1 -0.3634 -0.8898 0.5142 31 1 -0.3633 0.8901 0.5135 32 1 4.4157 1.3161 0.0003 33 1 4.5680 -2.4877 -0.5294 34 1 5.6065 -1.0421 -0.5265 35 1 4.4361 -2.2641 1.8871 36 1 6.1728 -3.6445 0.8953 37 1 7.2119 -2.1993 0.8979 38 1 5.2514 -3.8962 4.1755 39 1 5.6937 -4.9109 2.7348 40 1 7.7446 -2.9892 5.5224 41 1 8.6509 -3.6103 7.9833 42 1 6.9073 -3.2623 8.0693 43 1 7.3977 -6.5640 12.9251 44 1 8.2843 -4.4339 2.1361 45 1 8.9247 -3.2197 3.3254 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283020150.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:33 Heat of formation + Delta-G solvation = 2.786868 kcal Electronic energy + Delta-G solvation = -25177.198307 eV Core-core repulsion = 21323.162240 eV Total energy + Delta-G solvation = -3854.036067 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.70504 -40.21590 -38.31531 -36.43117 -35.13424 -33.30357 -32.45743 -32.42003 -30.03058 -28.95274 -26.86675 -25.94514 -25.48509 -24.47033 -22.66956 -22.40265 -21.37862 -20.80715 -19.28024 -17.86682 -17.44700 -17.21283 -16.72220 -16.27954 -16.01809 -15.37793 -15.32041 -14.91380 -14.80344 -14.58979 -14.28287 -14.20592 -13.69520 -13.59626 -13.40980 -13.22570 -13.14846 -12.88970 -12.82189 -12.66943 -12.50445 -12.19229 -11.71037 -11.64450 -11.21209 -11.06288 -11.02422 -10.92102 -10.76345 -10.65791 -10.36765 -9.81134 -9.41852 -9.20534 -9.06953 -8.94623 -8.87637 -8.23945 -6.50139 -6.21679 -3.92260 0.99570 2.19429 2.30623 3.01281 3.05685 3.22599 3.28000 3.32040 3.59758 3.69291 3.75274 4.20443 4.21331 4.29259 4.38400 4.52413 4.61893 4.66651 4.70393 4.86835 4.87727 5.01530 5.04503 5.12369 5.13177 5.13560 5.20240 5.32679 5.45880 5.46753 5.51399 5.57736 5.58367 5.81842 5.84546 5.86616 5.90224 5.94639 6.08337 6.14157 6.39374 6.70242 6.77837 7.34323 7.59720 7.70912 8.35303 8.60674 9.23701 10.85736 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014188 B = 0.001666 C = 0.001555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.956272 B =16803.515114 C =18005.046624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.191 3.809 3 N -0.487 5.487 4 C -0.016 4.016 5 C -0.052 4.052 6 C 0.147 3.853 7 N -0.685 5.685 8 C 0.069 3.931 9 C -0.109 4.109 10 H 0.100 0.900 11 C -0.153 4.153 12 C 0.126 3.874 13 H 0.102 0.898 14 N -0.721 5.721 15 C 0.534 3.466 16 O -0.517 6.517 17 C -0.154 4.154 18 S -0.060 6.060 19 C -0.536 4.536 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 C -0.140 4.140 28 O -0.203 6.203 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.102 0.898 32 H 0.184 0.816 33 H 0.050 0.950 34 H 0.106 0.894 35 H 0.348 0.652 36 H 0.036 0.964 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.085 0.915 40 H 0.399 0.601 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.268 0.732 44 H 0.092 0.908 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.889 11.631 -28.997 31.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.016 4.016 3 N -0.217 5.217 4 C -0.156 4.156 5 C -0.105 4.105 6 C 0.018 3.982 7 N -0.317 5.317 8 C -0.059 4.059 9 C -0.127 4.127 10 H 0.118 0.882 11 C -0.192 4.192 12 C 0.019 3.981 13 H 0.120 0.880 14 N -0.374 5.374 15 C 0.321 3.679 16 O -0.391 6.391 17 C -0.304 4.304 18 S 0.167 5.833 19 C -0.684 4.684 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.207 1.207 26 H -0.197 1.197 27 C -0.178 4.178 28 O -0.091 6.091 29 H 0.111 0.889 30 H 0.108 0.892 31 H 0.120 0.880 32 H 0.201 0.799 33 H 0.068 0.932 34 H 0.124 0.876 35 H 0.166 0.834 36 H 0.054 0.946 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.104 0.896 40 H 0.233 0.767 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.078 0.922 44 H 0.111 0.889 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.198 10.618 -28.928 31.645 hybrid contribution 0.469 1.090 0.835 1.451 sum -6.729 11.708 -28.094 31.171 Atomic orbital electron populations 1.20283 0.81258 1.05330 1.04687 1.26343 0.96504 0.78634 1.00115 1.70484 1.02213 1.30292 1.18668 1.23072 0.94965 0.92946 1.04568 1.23247 0.83247 0.95574 1.08425 1.20265 0.89832 0.96646 0.91456 1.60551 1.08995 1.50378 1.11798 1.22001 0.92493 0.94577 0.96834 1.22636 0.96559 0.97960 0.95577 0.88208 1.23577 0.97957 0.97580 1.00114 1.21702 0.95429 0.98775 0.82163 0.88035 1.45704 1.74571 1.12374 1.04781 1.20337 0.75384 0.86929 0.85273 1.90697 1.46166 1.15350 1.86841 1.23536 1.04861 1.05593 0.96444 1.85390 1.93252 1.10039 0.94665 1.22871 1.56315 0.97077 0.92139 0.90912 1.24993 0.94616 0.95317 0.98656 1.70016 1.45735 1.10391 1.24148 0.86167 0.78537 0.79700 0.81087 1.20266 1.20746 1.19692 1.23330 0.97035 0.98849 0.98622 1.84378 1.16755 1.37952 1.69984 0.88912 0.89242 0.87981 0.79862 0.93226 0.87553 0.83420 0.94588 0.90495 0.90837 0.89628 0.76734 0.89176 0.89194 0.92185 0.88943 0.90601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.25 10.51 36.01 0.38 0.13 16 2 C 0.19 1.67 8.34 -12.95 -0.11 1.56 16 3 N -0.49 -5.11 11.29 -11.10 -0.13 -5.24 16 4 C -0.02 -0.15 11.80 -17.77 -0.21 -0.36 16 5 C -0.05 -0.44 6.90 -35.69 -0.25 -0.68 16 6 C 0.15 0.89 6.23 -4.97 -0.03 0.86 16 7 N -0.69 -4.73 6.49 -115.05 -0.75 -5.48 16 8 C 0.07 0.42 5.51 -3.82 -0.02 0.40 16 9 C -0.11 -0.79 3.77 -89.81 -0.34 -1.13 16 10 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 11 C -0.15 -1.42 7.44 -25.83 -0.19 -1.61 16 12 C 0.13 1.40 4.33 -67.03 -0.29 1.11 16 13 H 0.10 1.35 7.46 -51.93 -0.39 0.96 16 14 N -0.72 -9.39 5.26 -52.93 -0.28 -9.67 16 15 C 0.53 9.88 7.85 -10.98 -0.09 9.80 16 16 O -0.52 -11.68 15.46 5.56 0.09 -11.59 16 17 C -0.15 -3.09 6.16 36.01 0.22 -2.87 16 18 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 19 C -0.54 -15.30 9.50 30.94 0.29 -15.00 16 20 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 21 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 22 N -0.87 -26.20 13.22 55.49 0.73 -25.47 16 23 Si 0.92 21.45 29.55 -169.99 -5.02 16.43 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 27 C -0.14 -1.05 7.39 -25.92 -0.19 -1.24 16 28 O -0.20 -1.91 10.78 5.35 0.06 -1.85 16 29 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.09 0.27 8.14 -51.92 -0.42 -0.16 16 31 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.18 1.26 8.06 -52.49 -0.42 0.83 16 33 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.35 2.65 8.72 -39.29 -0.34 2.31 16 36 H 0.04 0.21 7.88 -51.93 -0.41 -0.20 16 37 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.09 0.71 7.92 -51.93 -0.41 0.30 16 40 H 0.40 4.11 8.70 -40.82 -0.36 3.76 16 41 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 42 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 43 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 44 H 0.09 0.58 8.10 -51.93 -0.42 0.16 16 45 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 397.69 15.07 5.99 5.99 Total: -1.00 -36.41 397.69 -9.38 -45.78 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -6.94 Total: 1.98 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: -0.92 Total: -7.04 kcal Atomic # 7 Polarization: -45.44 SS G_CDS: -0.42 Total: -45.86 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: 0.14 Total: -13.44 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -36.41 -9.38 -45.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283020150.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.570 kcal (2) G-P(sol) polarization free energy of solvation -36.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds