Wall clock time and date at job start Tue Mar 31 2020 23:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30250 * 125.62048 * 2 1 4 4 C 1.34484 * 108.70027 * 179.97438 * 3 2 1 5 5 C 1.34330 * 107.66836 * 0.27078 * 4 3 2 6 6 C 1.50694 * 126.44286 * 179.73187 * 5 4 3 7 7 N 1.46908 * 109.47163 * 89.99663 * 6 5 4 8 8 C 1.46900 * 111.00016 * 179.97438 * 7 6 5 9 9 C 1.53000 * 109.46938 * 179.97438 * 8 7 6 10 10 H 1.08995 * 112.84921 * 314.66985 * 9 8 7 11 11 C 1.53785 * 113.61235 * 85.86534 * 9 8 7 12 12 C 1.53955 * 87.01826 * 139.94935 * 11 9 8 13 13 H 1.09001 * 113.74420 * 220.05331 * 12 11 9 14 14 N 1.46501 * 113.53536 * 89.18716 * 12 11 9 15 15 C 1.34783 * 119.99595 * 107.50269 * 14 12 11 16 16 O 1.21280 * 120.00157 * 0.02562 * 15 14 12 17 17 C 1.50700 * 119.99897 * 179.97438 * 15 14 12 18 18 S 1.80991 * 109.47347 * 180.02562 * 17 15 14 19 19 C 1.76196 * 100.00154 * 180.02562 * 18 17 15 20 20 H 1.07995 * 120.00176 * 359.97438 * 19 18 17 21 21 C 1.38801 * 119.99846 * 180.02562 * 19 18 17 22 22 N 1.31627 * 120.00246 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99877 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47117 * 89.99799 * 23 21 19 25 25 H 1.48499 * 109.47339 * 209.99680 * 23 21 19 26 26 H 1.48503 * 109.47160 * 329.99842 * 23 21 19 27 27 C 1.53780 * 87.11313 * 334.63923 * 12 11 9 28 28 O 1.33972 * 125.61724 * 179.97438 * 2 1 3 29 29 H 1.09001 * 109.47097 * 90.02027 * 1 2 3 30 30 H 1.09007 * 109.47129 * 210.02172 * 1 2 3 31 31 H 1.08997 * 109.46764 * 330.01876 * 1 2 3 32 32 H 1.08002 * 126.16218 * 179.97438 * 4 3 2 33 33 H 1.09001 * 109.47520 * 209.99424 * 6 5 4 34 34 H 1.09003 * 109.47512 * 329.99686 * 6 5 4 35 35 H 1.00903 * 110.99653 * 56.04531 * 7 6 5 36 36 H 1.08997 * 109.47381 * 299.99914 * 8 7 6 37 37 H 1.09004 * 109.47126 * 60.00133 * 8 7 6 38 38 H 1.08997 * 113.61325 * 254.53038 * 11 9 8 39 39 H 1.09000 * 113.61425 * 25.43189 * 11 9 8 40 40 H 0.96992 * 120.00247 * 287.50702 * 14 12 11 41 41 H 1.09008 * 109.46647 * 300.00285 * 17 15 14 42 42 H 1.09003 * 109.47249 * 59.99822 * 17 15 14 43 43 H 0.97000 * 120.00137 * 180.02562 * 22 21 19 44 44 H 1.09005 * 113.61489 * 270.81260 * 27 12 11 45 45 H 1.09000 * 113.69622 * 139.92250 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5522 0.6674 0.0006 5 6 3.5698 -0.6758 -0.0051 6 6 4.7936 -1.5550 -0.0124 7 7 5.1954 -1.8465 1.3703 8 6 6.3878 -2.7039 1.4023 9 6 6.7753 -2.9844 2.8556 10 1 6.7548 -2.0906 3.4792 11 6 6.0324 -4.1820 3.4710 12 6 7.3644 -4.5593 4.1446 13 1 7.5651 -5.6307 4.1508 14 7 7.5525 -3.9377 5.4578 15 6 7.4586 -4.6840 6.5762 16 8 7.2188 -5.8701 6.4955 17 6 7.6527 -4.0448 7.9271 18 16 7.4670 -5.2979 9.2198 19 6 7.7349 -4.3041 10.6499 20 1 7.9399 -3.2492 10.5438 21 6 7.6834 -4.8775 11.9130 22 7 7.4340 -6.1634 12.0424 23 14 7.9667 -3.8238 13.4292 24 1 6.6700 -3.2728 13.8984 25 1 8.5695 -4.6536 14.5031 26 1 8.8857 -2.7073 13.0915 27 6 8.0660 -3.8076 3.0012 28 8 2.2872 -1.0891 0.0005 29 1 -0.3633 -0.0004 -1.0277 30 1 -0.3634 -0.8898 0.5142 31 1 -0.3633 0.8901 0.5135 32 1 4.4157 1.3161 0.0003 33 1 4.5680 -2.4877 -0.5294 34 1 5.6065 -1.0421 -0.5265 35 1 4.4361 -2.2641 1.8871 36 1 6.1728 -3.6445 0.8953 37 1 7.2119 -2.1993 0.8979 38 1 5.2514 -3.8962 4.1755 39 1 5.6937 -4.9109 2.7348 40 1 7.7446 -2.9892 5.5224 41 1 8.6509 -3.6103 7.9833 42 1 6.9073 -3.2623 8.0693 43 1 7.3977 -6.5640 12.9251 44 1 8.2843 -4.4339 2.1361 45 1 8.9247 -3.2197 3.3254 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283020150.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:33 Heat of formation + Delta-G solvation = -26.089357 kcal Electronic energy + Delta-G solvation = -25178.450474 eV Core-core repulsion = 21323.162240 eV Total energy + Delta-G solvation = -3855.288234 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.32891 -41.23589 -39.48740 -37.04728 -35.79175 -34.60019 -34.42111 -33.06571 -30.99927 -29.99984 -27.74927 -27.44342 -26.63817 -25.07617 -23.27434 -23.10153 -22.13447 -21.95789 -20.16349 -19.83194 -18.13435 -17.83945 -17.83403 -17.16133 -17.05946 -16.88291 -16.43922 -16.10278 -15.90447 -15.74282 -15.14820 -14.97105 -14.77429 -14.60067 -14.29489 -14.14346 -13.86644 -13.84082 -13.54403 -13.33056 -13.27620 -13.19425 -13.17218 -12.89764 -12.62949 -12.58685 -12.31792 -11.86724 -11.72590 -11.60532 -11.40270 -11.14847 -11.08791 -10.95535 -10.28733 -10.03674 -9.77089 -9.45010 -8.67527 -8.35231 -6.13463 0.39028 1.26330 1.42185 1.46540 1.57172 1.58668 1.63863 1.68764 2.24984 2.28820 2.98888 3.10067 3.22853 3.31390 3.55865 3.72698 3.74023 3.89147 3.96922 3.99588 4.06640 4.16775 4.29755 4.42843 4.46017 4.49684 4.60826 4.61691 4.67762 4.71791 4.77507 4.81306 4.90207 4.92827 5.00767 5.04786 5.08701 5.19661 5.32222 5.37816 5.41374 5.67349 5.92693 6.19296 6.23444 6.51195 6.71700 7.06042 7.25013 8.73992 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014188 B = 0.001666 C = 0.001555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.956272 B =16803.515114 C =18005.046624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.184 3.816 3 N -0.521 5.521 4 C -0.034 4.034 5 C -0.056 4.056 6 C 0.151 3.849 7 N -0.694 5.694 8 C 0.074 3.926 9 C -0.094 4.094 10 H 0.096 0.904 11 C -0.150 4.150 12 C 0.104 3.896 13 H 0.076 0.924 14 N -0.695 5.695 15 C 0.536 3.464 16 O -0.566 6.566 17 C -0.130 4.130 18 S -0.151 6.151 19 C -0.547 4.547 20 H 0.083 0.917 21 C 0.013 3.987 22 N -0.911 5.911 23 Si 0.999 3.001 24 H -0.268 1.268 25 H -0.277 1.277 26 H -0.258 1.258 27 C -0.120 4.120 28 O -0.216 6.216 29 H 0.110 0.890 30 H 0.103 0.897 31 H 0.108 0.892 32 H 0.199 0.801 33 H 0.057 0.943 34 H 0.126 0.874 35 H 0.341 0.659 36 H 0.044 0.956 37 H 0.092 0.908 38 H 0.054 0.946 39 H 0.096 0.904 40 H 0.415 0.585 41 H 0.110 0.890 42 H 0.108 0.892 43 H 0.271 0.729 44 H 0.112 0.888 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.308 13.817 -30.317 33.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.023 4.023 3 N -0.252 5.252 4 C -0.173 4.173 5 C -0.109 4.109 6 C 0.022 3.978 7 N -0.325 5.325 8 C -0.054 4.054 9 C -0.113 4.113 10 H 0.114 0.886 11 C -0.189 4.189 12 C -0.001 4.001 13 H 0.094 0.906 14 N -0.348 5.348 15 C 0.322 3.678 16 O -0.444 6.444 17 C -0.281 4.281 18 S 0.076 5.924 19 C -0.695 4.695 20 H 0.101 0.899 21 C -0.192 4.192 22 N -0.547 5.547 23 Si 0.820 3.180 24 H -0.193 1.193 25 H -0.202 1.202 26 H -0.182 1.182 27 C -0.158 4.158 28 O -0.104 6.104 29 H 0.129 0.871 30 H 0.121 0.879 31 H 0.126 0.874 32 H 0.215 0.785 33 H 0.075 0.925 34 H 0.143 0.857 35 H 0.158 0.842 36 H 0.062 0.938 37 H 0.110 0.890 38 H 0.073 0.927 39 H 0.115 0.885 40 H 0.253 0.747 41 H 0.129 0.871 42 H 0.127 0.873 43 H 0.080 0.920 44 H 0.130 0.870 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -6.602 12.859 -30.302 33.573 hybrid contribution 0.255 0.434 1.105 1.214 sum -6.346 13.293 -29.197 32.703 Atomic orbital electron populations 1.20519 0.78627 1.06276 1.06116 1.27205 0.97930 0.78190 0.98937 1.70478 1.03148 1.31388 1.20146 1.23414 0.95129 0.93696 1.05034 1.23680 0.83569 0.95803 1.07842 1.20379 0.89397 0.96780 0.91196 1.60565 1.09067 1.50622 1.12243 1.21979 0.92571 0.95076 0.95786 1.22502 0.95569 0.96797 0.96396 0.88582 1.23566 0.96458 0.98964 0.99872 1.22002 0.98200 0.97953 0.81987 0.90555 1.45438 1.72342 1.12806 1.04226 1.20073 0.75361 0.86417 0.85973 1.90684 1.48935 1.17405 1.87420 1.23377 1.06594 1.03372 0.94780 1.85565 1.93716 1.14936 0.98176 1.23210 1.56296 0.97435 0.92570 0.89915 1.26133 0.93960 0.96690 1.02368 1.70181 1.46896 1.12559 1.25102 0.84950 0.78885 0.77884 0.76235 1.19338 1.20238 1.18184 1.23274 0.97156 0.98260 0.97135 1.84389 1.17350 1.38417 1.70202 0.87126 0.87861 0.87382 0.78455 0.92504 0.85653 0.84170 0.93788 0.88979 0.92724 0.88538 0.74744 0.87139 0.87348 0.91979 0.86987 0.89622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.43 10.51 71.24 0.75 0.32 16 2 C 0.18 3.12 8.34 88.34 0.74 3.86 16 3 N -0.52 -10.83 11.29 -303.82 -3.43 -14.26 16 4 C -0.03 -0.60 11.80 83.39 0.98 0.39 16 5 C -0.06 -0.89 6.90 24.79 0.17 -0.72 16 6 C 0.15 1.50 6.23 85.55 0.53 2.04 16 7 N -0.69 -8.01 6.49 -517.92 -3.36 -11.38 16 8 C 0.07 0.65 5.51 86.30 0.48 1.13 16 9 C -0.09 -1.11 3.77 -10.27 -0.04 -1.15 16 10 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 11 C -0.15 -2.58 7.44 31.18 0.23 -2.35 16 12 C 0.10 2.20 4.33 45.58 0.20 2.39 16 13 H 0.08 2.04 7.46 -2.39 -0.02 2.02 16 14 N -0.70 -17.26 5.26 -439.75 -2.31 -19.58 16 15 C 0.54 19.82 7.85 87.66 0.69 20.51 16 16 O -0.57 -26.47 15.46 -3.03 -0.05 -26.51 16 17 C -0.13 -5.17 6.16 71.24 0.44 -4.74 16 18 S -0.15 -8.45 20.57 -56.49 -1.16 -9.61 16 19 C -0.55 -31.43 9.50 67.95 0.65 -30.79 16 20 H 0.08 4.41 7.80 -2.91 -0.02 4.38 16 21 C 0.01 0.76 5.49 84.86 0.47 1.22 16 22 N -0.91 -56.20 13.22 21.65 0.29 -55.92 16 23 Si 1.00 43.75 29.55 68.60 2.03 45.78 16 24 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 25 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 26 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 27 C -0.12 -1.44 7.39 31.12 0.23 -1.21 16 28 O -0.22 -3.91 10.78 -3.76 -0.04 -3.95 16 29 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.10 0.47 8.14 -2.38 -0.02 0.45 16 31 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.20 2.55 8.06 -2.91 -0.02 2.52 16 33 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.13 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.34 4.68 8.72 -89.69 -0.78 3.90 16 36 H 0.04 0.35 7.88 -2.39 -0.02 0.33 16 37 H 0.09 0.60 8.14 -2.38 -0.02 0.58 16 38 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.10 1.46 7.92 -2.39 -0.02 1.44 16 40 H 0.42 7.58 8.70 -92.71 -0.81 6.77 16 41 H 0.11 3.94 8.14 -2.39 -0.02 3.92 16 42 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 43 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 44 H 0.11 1.00 8.10 -2.38 -0.02 0.98 16 45 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -82.51 397.69 -2.11 -84.62 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: -0.57 Total: 19.90 kcal Atomic # 6 Polarization: -15.60 SS G_CDS: 6.51 Total: -9.09 kcal Atomic # 7 Polarization: -92.31 SS G_CDS: -8.82 Total: -101.13 kcal Atomic # 8 Polarization: -30.37 SS G_CDS: -0.09 Total: -30.46 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Atomic # 16 Polarization: -8.45 SS G_CDS: -1.16 Total: -9.61 kcal Total: -82.51 -2.11 -84.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283020150.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.528 kcal (2) G-P(sol) polarization free energy of solvation -82.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds