Wall clock time and date at job start Tue Mar 31 2020 22:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30250 * 125.62069 * 2 1 4 4 C 1.34485 * 108.70025 * 179.97438 * 3 2 1 5 5 C 1.50694 * 126.16496 * 180.02562 * 4 3 2 6 6 N 1.46904 * 109.47246 * 274.97742 * 5 4 3 7 7 C 1.46899 * 111.00075 * 179.97438 * 6 5 4 8 8 H 1.09003 * 110.64139 * 34.30218 * 7 6 5 9 9 C 1.55156 * 110.72341 * 271.15950 * 7 6 5 10 10 C 1.55120 * 101.48620 * 206.26387 * 9 7 6 11 11 N 1.47423 * 104.94258 * 36.77708 * 10 9 7 12 12 C 1.34779 * 125.65003 * 156.03007 * 11 10 9 13 13 O 1.21278 * 120.00034 * 179.97438 * 12 11 10 14 14 C 1.50699 * 119.99870 * 359.95846 * 12 11 10 15 15 S 1.80998 * 109.47183 * 179.97438 * 14 12 11 16 16 C 1.76197 * 100.00144 * 180.02562 * 15 14 12 17 17 H 1.07998 * 119.99953 * 359.97438 * 16 15 14 18 18 C 1.38801 * 120.00167 * 180.02562 * 16 15 14 19 19 N 1.31633 * 120.00303 * 180.02562 * 18 16 15 20 20 Si 1.86805 * 119.99963 * 359.97438 * 18 16 15 21 21 H 1.48505 * 109.46748 * 90.00488 * 20 18 16 22 22 H 1.48493 * 109.47237 * 210.00483 * 20 18 16 23 23 H 1.48501 * 109.47183 * 330.01032 * 20 18 16 24 24 C 1.47024 * 108.70486 * 335.99682 * 11 10 9 25 25 H 1.08997 * 109.88752 * 120.47737 * 24 11 10 26 26 C 1.52999 * 109.88049 * 241.64569 * 24 11 10 27 27 C 1.34325 * 107.66767 * 0.02562 * 4 3 2 28 28 O 1.33974 * 125.61592 * 179.97438 * 2 1 3 29 29 H 1.08997 * 109.47554 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47363 * 300.00298 * 1 2 3 31 31 H 1.09009 * 109.46979 * 60.00309 * 1 2 3 32 32 H 1.09005 * 109.47246 * 34.97581 * 5 4 3 33 33 H 1.09001 * 109.47447 * 154.97910 * 5 4 3 34 34 H 1.00896 * 111.00015 * 303.94938 * 6 5 4 35 35 H 1.08998 * 110.99952 * 324.20811 * 9 7 6 36 36 H 1.08993 * 111.00485 * 88.05937 * 9 7 6 37 37 H 1.08997 * 110.21360 * 277.95350 * 10 9 7 38 38 H 1.09005 * 110.51167 * 155.75145 * 10 9 7 39 39 H 1.08993 * 109.47496 * 299.99727 * 14 12 11 40 40 H 1.09003 * 109.47158 * 59.99742 * 14 12 11 41 41 H 0.96994 * 120.00362 * 179.97438 * 19 18 16 42 42 H 1.09000 * 109.46901 * 177.80817 * 26 24 11 43 43 H 1.09002 * 109.47357 * 297.80059 * 26 24 11 44 44 H 1.09002 * 109.47721 * 57.80253 * 26 24 11 45 45 H 1.08003 * 126.44387 * 180.02562 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5522 0.6674 0.0006 5 6 4.7571 1.5725 0.0013 6 7 5.0771 1.9629 -1.3782 7 6 6.2488 2.8481 -1.4165 8 1 6.9609 2.5770 -0.6370 9 6 5.8201 4.3327 -1.2761 10 6 6.9827 5.0598 -2.0014 11 7 7.3368 4.1793 -3.1296 12 6 7.9438 4.5676 -4.2686 13 8 8.1885 3.7532 -5.1333 14 6 8.3181 6.0137 -4.4677 15 16 9.1114 6.2147 -6.0821 16 6 9.4345 7.9466 -6.0507 17 1 9.1472 8.5340 -5.1912 18 6 10.0574 8.5561 -7.1311 19 7 10.2992 9.8498 -7.1074 20 14 10.5537 7.5401 -8.6181 21 1 9.4358 7.5142 -9.5953 22 1 11.7522 8.1448 -9.2529 23 1 10.8675 6.1538 -8.1881 24 6 6.9188 2.8073 -2.8061 25 1 6.2067 2.4514 -3.5506 26 6 8.1402 1.8867 -2.7681 27 6 3.5697 -0.6758 0.0004 28 8 2.2872 -1.0891 0.0005 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 4.5415 2.4639 0.5905 33 1 5.6067 1.0461 0.4363 34 1 5.2179 1.1510 -1.9604 35 1 4.8715 4.5148 -1.7811 36 1 5.7656 4.6261 -0.2278 37 1 7.8327 5.1750 -1.3289 38 1 6.6552 6.0328 -2.3678 39 1 7.4207 6.6307 -4.4242 40 1 9.0091 6.3215 -3.6829 41 1 10.7348 10.2756 -7.8622 42 1 7.8279 0.8801 -2.4897 43 1 8.6080 1.8627 -3.7523 44 1 8.8549 2.2611 -2.0351 45 1 4.4468 -1.3059 0.0011 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283844015.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:22 Heat of formation + Delta-G solvation = -6.850934 kcal Electronic energy + Delta-G solvation = -26190.588400 eV Core-core repulsion = 22336.134407 eV Total energy + Delta-G solvation = -3854.453993 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.72012 -40.20510 -37.91782 -36.07395 -34.63707 -32.74263 -32.42366 -31.72345 -30.85202 -28.91362 -28.10691 -26.32561 -25.59823 -24.47970 -22.91880 -22.00821 -21.38413 -20.87201 -19.08875 -17.63388 -17.57766 -17.21078 -16.85142 -16.33398 -16.08169 -15.18480 -15.03861 -14.96149 -14.77977 -14.40829 -14.15285 -13.93831 -13.79491 -13.63238 -13.56473 -13.08153 -12.99289 -12.83220 -12.69811 -12.60906 -12.36005 -11.95987 -11.82356 -11.53433 -11.45573 -11.25085 -11.20028 -10.99699 -10.86622 -10.84340 -10.58416 -9.84396 -9.45425 -9.22839 -8.98935 -8.86244 -8.56517 -8.47954 -6.90301 -6.27473 -3.99073 1.02659 2.19455 2.35104 2.68671 2.97590 3.18167 3.34522 3.51585 3.52408 3.60710 3.87160 4.13770 4.34127 4.34695 4.41176 4.45447 4.72398 4.74926 4.82335 4.91539 4.94365 5.04256 5.06410 5.11552 5.13650 5.20057 5.24235 5.29508 5.35387 5.46706 5.50185 5.53613 5.57413 5.69305 5.80156 5.85894 5.90555 5.99709 6.03903 6.14648 6.43506 6.60941 6.88862 7.37451 7.61657 7.95582 8.43163 8.47162 9.18718 10.81720 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.027058 B = 0.001865 C = 0.001851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.561822 B =15006.074361 C =15123.413388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.188 3.812 3 N -0.466 5.466 4 C -0.005 4.005 5 C 0.142 3.858 6 N -0.671 5.671 7 C 0.078 3.922 8 H 0.065 0.935 9 C -0.121 4.121 10 C 0.098 3.902 11 N -0.618 5.618 12 C 0.549 3.451 13 O -0.517 6.517 14 C -0.117 4.117 15 S -0.142 6.142 16 C -0.521 4.521 17 H 0.088 0.912 18 C 0.096 3.904 19 N -0.880 5.880 20 Si 0.857 3.143 21 H -0.267 1.267 22 H -0.274 1.274 23 H -0.235 1.235 24 C 0.138 3.862 25 H 0.082 0.918 26 C -0.165 4.165 27 C -0.074 4.074 28 O -0.204 6.204 29 H 0.087 0.913 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.092 0.908 33 H 0.050 0.950 34 H 0.344 0.656 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.068 0.932 38 H 0.083 0.917 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.271 0.729 42 H 0.058 0.942 43 H 0.076 0.924 44 H 0.057 0.943 45 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.835 -21.445 20.166 33.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.019 4.019 3 N -0.196 5.196 4 C -0.125 4.125 5 C 0.012 3.988 6 N -0.303 5.303 7 C -0.032 4.032 8 H 0.083 0.917 9 C -0.159 4.159 10 C -0.025 4.025 11 N -0.355 5.355 12 C 0.337 3.663 13 O -0.391 6.391 14 C -0.268 4.268 15 S 0.084 5.916 16 C -0.668 4.668 17 H 0.106 0.894 18 C -0.113 4.113 19 N -0.517 5.517 20 Si 0.681 3.319 21 H -0.192 1.192 22 H -0.200 1.200 23 H -0.159 1.159 24 C 0.034 3.966 25 H 0.100 0.900 26 C -0.223 4.223 27 C -0.145 4.145 28 O -0.091 6.091 29 H 0.106 0.894 30 H 0.115 0.885 31 H 0.116 0.884 32 H 0.111 0.889 33 H 0.068 0.932 34 H 0.163 0.837 35 H 0.107 0.893 36 H 0.099 0.901 37 H 0.086 0.914 38 H 0.101 0.899 39 H 0.114 0.886 40 H 0.114 0.886 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.095 0.905 44 H 0.076 0.924 45 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -16.051 -21.365 18.698 32.615 hybrid contribution 1.085 -0.474 0.537 1.300 sum -14.965 -21.839 19.235 32.724 Atomic orbital electron populations 1.20260 0.81286 1.04675 1.05224 1.26412 0.96646 0.78582 1.00268 1.70355 1.01531 1.29976 1.17705 1.21581 0.93275 0.92182 1.05487 1.20168 0.90591 0.97222 0.90782 1.60435 1.38432 1.21963 1.09452 1.22640 0.90286 0.94158 0.96082 0.91722 1.22877 0.98933 0.93156 1.00969 1.22386 0.97162 0.94829 0.88138 1.48432 1.61085 1.08513 1.17507 1.19962 0.76243 0.90356 0.79705 1.90685 1.52874 1.54207 1.41367 1.23257 1.04508 0.94514 1.04519 1.84771 1.76231 1.12934 1.17665 1.22312 1.45807 0.90502 1.08196 0.89384 1.24709 0.94004 0.94593 0.97985 1.69937 1.40806 1.09161 1.31784 0.86736 0.79221 0.82638 0.83261 1.19201 1.19957 1.15945 1.21514 0.96062 0.83510 0.95534 0.90008 1.22185 0.97958 0.98182 1.03981 1.24790 0.85111 0.96161 1.08481 1.84456 1.16866 1.37900 1.69831 0.89441 0.88477 0.88361 0.88925 0.93211 0.83704 0.89301 0.90107 0.91357 0.89910 0.88567 0.88580 0.91958 0.92341 0.90476 0.92430 0.77022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.23 10.51 36.00 0.38 0.15 16 2 C 0.19 1.56 8.34 -12.95 -0.11 1.45 16 3 N -0.47 -4.85 11.29 -7.36 -0.08 -4.93 16 4 C -0.01 -0.04 6.62 -82.81 -0.55 -0.59 16 5 C 0.14 1.02 6.09 -4.98 -0.03 0.99 16 6 N -0.67 -5.58 6.31 -106.05 -0.67 -6.25 16 7 C 0.08 0.67 2.78 -65.88 -0.18 0.49 16 8 H 0.06 0.48 7.57 -51.93 -0.39 0.09 16 9 C -0.12 -1.07 6.78 -24.47 -0.17 -1.24 16 10 C 0.10 1.05 6.70 -2.42 -0.02 1.04 16 11 N -0.62 -8.69 3.07 -162.88 -0.50 -9.19 16 12 C 0.55 10.23 7.66 -10.99 -0.08 10.15 16 13 O -0.52 -11.37 14.91 5.56 0.08 -11.29 16 14 C -0.12 -2.35 5.16 36.00 0.19 -2.17 16 15 S -0.14 -3.67 18.55 -107.50 -1.99 -5.66 16 16 C -0.52 -15.13 10.04 30.94 0.31 -14.82 16 17 H 0.09 2.66 8.03 -52.49 -0.42 2.24 16 18 C 0.10 2.82 5.50 -17.43 -0.10 2.72 16 19 N -0.88 -26.70 13.97 55.49 0.78 -25.92 16 20 Si 0.86 21.97 27.74 -169.99 -4.72 17.26 16 21 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.24 -6.03 6.74 56.52 0.38 -5.65 16 24 C 0.14 1.61 2.98 -66.95 -0.20 1.41 16 25 H 0.08 1.07 7.93 -51.93 -0.41 0.66 16 26 C -0.16 -1.84 9.09 37.16 0.34 -1.50 16 27 C -0.07 -0.52 12.08 29.35 0.35 -0.16 16 28 O -0.20 -1.69 10.78 5.34 0.06 -1.64 16 29 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.10 0.34 8.14 -51.92 -0.42 -0.08 16 32 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.05 0.26 8.08 -51.93 -0.42 -0.16 16 34 H 0.34 2.69 8.37 -39.29 -0.33 2.36 16 35 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.08 0.89 7.47 -51.93 -0.39 0.50 16 39 H 0.10 1.82 7.85 -51.92 -0.41 1.41 16 40 H 0.10 1.80 8.14 -51.91 -0.42 1.38 16 41 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.08 1.11 6.90 -51.93 -0.36 0.75 16 44 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.21 0.69 8.06 -52.48 -0.42 0.26 16 LS Contribution 387.89 15.07 5.85 5.85 Total: -1.00 -36.50 387.89 -8.00 -44.50 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -6.94 Total: -0.64 kcal Atomic # 6 Polarization: -2.23 SS G_CDS: 0.14 Total: -2.09 kcal Atomic # 7 Polarization: -45.82 SS G_CDS: -0.48 Total: -46.30 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: 0.14 Total: -12.92 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.72 Total: 17.26 kcal Atomic # 16 Polarization: -3.67 SS G_CDS: -1.99 Total: -5.66 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -36.50 -8.00 -44.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283844015.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.651 kcal (2) G-P(sol) polarization free energy of solvation -36.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds