Wall clock time and date at job start Tue Mar 31 2020 22:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30250 * 125.62069 * 2 1 4 4 C 1.34485 * 108.70025 * 179.97438 * 3 2 1 5 5 C 1.50694 * 126.16496 * 180.02562 * 4 3 2 6 6 N 1.46904 * 109.47246 * 274.97742 * 5 4 3 7 7 C 1.46899 * 111.00075 * 179.97438 * 6 5 4 8 8 H 1.09003 * 110.64139 * 34.30218 * 7 6 5 9 9 C 1.55156 * 110.72341 * 271.15950 * 7 6 5 10 10 C 1.55120 * 101.48620 * 206.26387 * 9 7 6 11 11 N 1.47423 * 104.94258 * 36.77708 * 10 9 7 12 12 C 1.34779 * 125.65003 * 156.03007 * 11 10 9 13 13 O 1.21278 * 120.00034 * 179.97438 * 12 11 10 14 14 C 1.50699 * 119.99870 * 359.95846 * 12 11 10 15 15 S 1.80998 * 109.47183 * 179.97438 * 14 12 11 16 16 C 1.76197 * 100.00144 * 180.02562 * 15 14 12 17 17 H 1.07998 * 119.99953 * 359.97438 * 16 15 14 18 18 C 1.38801 * 120.00167 * 180.02562 * 16 15 14 19 19 N 1.31633 * 120.00303 * 180.02562 * 18 16 15 20 20 Si 1.86805 * 119.99963 * 359.97438 * 18 16 15 21 21 H 1.48505 * 109.46748 * 90.00488 * 20 18 16 22 22 H 1.48493 * 109.47237 * 210.00483 * 20 18 16 23 23 H 1.48501 * 109.47183 * 330.01032 * 20 18 16 24 24 C 1.47024 * 108.70486 * 335.99682 * 11 10 9 25 25 H 1.08997 * 109.88752 * 120.47737 * 24 11 10 26 26 C 1.52999 * 109.88049 * 241.64569 * 24 11 10 27 27 C 1.34325 * 107.66767 * 0.02562 * 4 3 2 28 28 O 1.33974 * 125.61592 * 179.97438 * 2 1 3 29 29 H 1.08997 * 109.47554 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47363 * 300.00298 * 1 2 3 31 31 H 1.09009 * 109.46979 * 60.00309 * 1 2 3 32 32 H 1.09005 * 109.47246 * 34.97581 * 5 4 3 33 33 H 1.09001 * 109.47447 * 154.97910 * 5 4 3 34 34 H 1.00896 * 111.00015 * 303.94938 * 6 5 4 35 35 H 1.08998 * 110.99952 * 324.20811 * 9 7 6 36 36 H 1.08993 * 111.00485 * 88.05937 * 9 7 6 37 37 H 1.08997 * 110.21360 * 277.95350 * 10 9 7 38 38 H 1.09005 * 110.51167 * 155.75145 * 10 9 7 39 39 H 1.08993 * 109.47496 * 299.99727 * 14 12 11 40 40 H 1.09003 * 109.47158 * 59.99742 * 14 12 11 41 41 H 0.96994 * 120.00362 * 179.97438 * 19 18 16 42 42 H 1.09000 * 109.46901 * 177.80817 * 26 24 11 43 43 H 1.09002 * 109.47357 * 297.80059 * 26 24 11 44 44 H 1.09002 * 109.47721 * 57.80253 * 26 24 11 45 45 H 1.08003 * 126.44387 * 180.02562 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5522 0.6674 0.0006 5 6 4.7571 1.5725 0.0013 6 7 5.0771 1.9629 -1.3782 7 6 6.2488 2.8481 -1.4165 8 1 6.9609 2.5770 -0.6370 9 6 5.8201 4.3327 -1.2761 10 6 6.9827 5.0598 -2.0014 11 7 7.3368 4.1793 -3.1296 12 6 7.9438 4.5676 -4.2686 13 8 8.1885 3.7532 -5.1333 14 6 8.3181 6.0137 -4.4677 15 16 9.1114 6.2147 -6.0821 16 6 9.4345 7.9466 -6.0507 17 1 9.1472 8.5340 -5.1912 18 6 10.0574 8.5561 -7.1311 19 7 10.2992 9.8498 -7.1074 20 14 10.5537 7.5401 -8.6181 21 1 9.4358 7.5142 -9.5953 22 1 11.7522 8.1448 -9.2529 23 1 10.8675 6.1538 -8.1881 24 6 6.9188 2.8073 -2.8061 25 1 6.2067 2.4514 -3.5506 26 6 8.1402 1.8867 -2.7681 27 6 3.5697 -0.6758 0.0004 28 8 2.2872 -1.0891 0.0005 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 4.5415 2.4639 0.5905 33 1 5.6067 1.0461 0.4363 34 1 5.2179 1.1510 -1.9604 35 1 4.8715 4.5148 -1.7811 36 1 5.7656 4.6261 -0.2278 37 1 7.8327 5.1750 -1.3289 38 1 6.6552 6.0328 -2.3678 39 1 7.4207 6.6307 -4.4242 40 1 9.0091 6.3215 -3.6829 41 1 10.7348 10.2756 -7.8622 42 1 7.8279 0.8801 -2.4897 43 1 8.6080 1.8627 -3.7523 44 1 8.8549 2.2611 -2.0351 45 1 4.4468 -1.3059 0.0011 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283844015.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:22 Heat of formation + Delta-G solvation = -35.377119 kcal Electronic energy + Delta-G solvation = -26191.825388 eV Core-core repulsion = 22336.134407 eV Total energy + Delta-G solvation = -3855.690982 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.26893 -41.32942 -39.06362 -36.83289 -35.34411 -34.68270 -33.41384 -32.59405 -31.82856 -30.11114 -28.79845 -27.85704 -26.96475 -25.22605 -23.97864 -22.58285 -21.93893 -21.69446 -20.47212 -19.49086 -18.19094 -18.13205 -17.70205 -17.45186 -17.11770 -16.78784 -16.44296 -16.01171 -15.65678 -15.46352 -15.07876 -14.91819 -14.84482 -14.72234 -14.49898 -14.07531 -13.87743 -13.82501 -13.60581 -13.34811 -13.33104 -13.17508 -13.01784 -12.98577 -12.80342 -12.58028 -12.35559 -12.11119 -11.95146 -11.87925 -11.66265 -11.46598 -11.18165 -10.94115 -10.55568 -9.78079 -9.72793 -9.42561 -9.01918 -8.52417 -6.23782 0.50355 0.94507 1.30533 1.43478 1.51316 1.51663 1.62460 1.89785 2.02683 2.24178 2.66694 2.85594 3.04513 3.25521 3.30273 3.60315 3.75979 3.86148 3.99531 4.03842 4.14713 4.24605 4.30108 4.37173 4.40677 4.42743 4.53162 4.56027 4.63996 4.65911 4.69100 4.77183 4.84454 4.97342 5.01161 5.02362 5.09482 5.21293 5.23680 5.37689 5.40880 5.69865 5.98761 6.10242 6.27636 6.38036 6.82381 6.92482 7.06454 8.59929 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.027058 B = 0.001865 C = 0.001851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.561822 B =15006.074361 C =15123.413388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.179 3.821 3 N -0.506 5.506 4 C -0.030 4.030 5 C 0.147 3.853 6 N -0.682 5.682 7 C 0.095 3.905 8 H 0.089 0.911 9 C -0.113 4.113 10 C 0.089 3.911 11 N -0.611 5.611 12 C 0.548 3.452 13 O -0.559 6.559 14 C -0.103 4.103 15 S -0.174 6.174 16 C -0.529 4.529 17 H 0.062 0.938 18 C 0.047 3.953 19 N -0.915 5.915 20 Si 0.914 3.086 21 H -0.263 1.263 22 H -0.257 1.257 23 H -0.238 1.238 24 C 0.134 3.866 25 H 0.064 0.936 26 C -0.158 4.158 27 C -0.067 4.067 28 O -0.214 6.214 29 H 0.106 0.894 30 H 0.107 0.893 31 H 0.102 0.898 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.347 0.653 35 H 0.072 0.928 36 H 0.108 0.892 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.107 0.893 40 H 0.111 0.889 41 H 0.277 0.723 42 H 0.088 0.912 43 H 0.039 0.961 44 H 0.064 0.936 45 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.243 -23.342 21.961 35.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.029 4.029 3 N -0.237 5.237 4 C -0.150 4.150 5 C 0.018 3.982 6 N -0.315 5.315 7 C -0.015 4.015 8 H 0.107 0.893 9 C -0.151 4.151 10 C -0.033 4.033 11 N -0.345 5.345 12 C 0.336 3.664 13 O -0.438 6.438 14 C -0.253 4.253 15 S 0.053 5.947 16 C -0.677 4.677 17 H 0.080 0.920 18 C -0.159 4.159 19 N -0.553 5.553 20 Si 0.736 3.264 21 H -0.187 1.187 22 H -0.181 1.181 23 H -0.162 1.162 24 C 0.030 3.970 25 H 0.082 0.918 26 C -0.216 4.216 27 C -0.138 4.138 28 O -0.101 6.101 29 H 0.124 0.876 30 H 0.126 0.874 31 H 0.120 0.880 32 H 0.104 0.896 33 H 0.095 0.905 34 H 0.166 0.834 35 H 0.090 0.910 36 H 0.126 0.874 37 H 0.108 0.892 38 H 0.099 0.901 39 H 0.125 0.875 40 H 0.129 0.871 41 H 0.087 0.913 42 H 0.107 0.893 43 H 0.058 0.942 44 H 0.083 0.917 45 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -16.482 -23.258 20.548 35.140 hybrid contribution 1.092 0.090 0.143 1.105 sum -15.390 -23.167 20.690 34.665 Atomic orbital electron populations 1.20458 0.78957 1.06138 1.05841 1.27164 0.97973 0.78245 0.99471 1.70336 1.02793 1.31317 1.19214 1.21892 0.93189 0.93210 1.06663 1.20178 0.90997 0.97103 0.89885 1.60383 1.38259 1.22366 1.10522 1.22514 0.90600 0.94132 0.94301 0.89325 1.22850 0.97150 0.93134 1.02003 1.22710 0.98805 0.94438 0.87352 1.48404 1.58894 1.10519 1.16719 1.19614 0.76876 0.89177 0.80729 1.90668 1.55137 1.54775 1.43195 1.23209 1.04669 0.96384 1.01086 1.84685 1.77340 1.10261 1.22430 1.22441 1.45582 0.92209 1.07457 0.91961 1.25550 0.94018 0.95641 1.00673 1.70011 1.41702 1.10568 1.33029 0.85875 0.79536 0.81044 0.79957 1.18746 1.18138 1.16158 1.21704 0.96224 0.81998 0.97077 0.91808 1.22111 0.97529 0.99893 1.02046 1.25454 0.85509 0.96192 1.06681 1.84473 1.17547 1.38141 1.69905 0.87573 0.87437 0.87994 0.89625 0.90464 0.83355 0.90953 0.87397 0.89189 0.90083 0.87473 0.87115 0.91327 0.89280 0.94183 0.91678 0.73646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.39 10.51 71.24 0.75 0.36 16 2 C 0.18 2.79 8.34 88.34 0.74 3.53 16 3 N -0.51 -10.13 11.29 -291.98 -3.30 -13.43 16 4 C -0.03 -0.47 6.62 41.26 0.27 -0.20 16 5 C 0.15 1.72 6.09 85.55 0.52 2.24 16 6 N -0.68 -9.76 6.31 -489.44 -3.09 -12.84 16 7 C 0.09 1.35 2.78 46.10 0.13 1.47 16 8 H 0.09 0.91 7.57 -2.39 -0.02 0.89 16 9 C -0.11 -1.70 6.78 32.06 0.22 -1.48 16 10 C 0.09 1.70 6.70 86.93 0.58 2.28 16 11 N -0.61 -16.43 3.07 -787.64 -2.42 -18.84 16 12 C 0.55 20.31 7.66 87.66 0.67 20.98 16 13 O -0.56 -24.97 14.91 -3.02 -0.05 -25.02 16 14 C -0.10 -4.09 5.16 71.24 0.37 -3.72 16 15 S -0.17 -9.02 18.55 -56.49 -1.05 -10.07 16 16 C -0.53 -31.30 10.04 67.95 0.68 -30.62 16 17 H 0.06 3.87 8.03 -2.91 -0.02 3.85 16 18 C 0.05 2.77 5.50 84.86 0.47 3.24 16 19 N -0.92 -56.11 13.97 21.65 0.30 -55.80 16 20 Si 0.91 45.56 27.74 68.60 1.90 47.46 16 21 H -0.26 -12.81 7.11 99.48 0.71 -12.10 16 22 H -0.26 -11.95 7.11 99.48 0.71 -11.25 16 23 H -0.24 -11.85 6.74 99.48 0.67 -11.18 16 24 C 0.13 2.90 2.98 45.34 0.13 3.04 16 25 H 0.06 1.64 7.93 -2.39 -0.02 1.62 16 26 C -0.16 -3.25 9.09 71.98 0.65 -2.59 16 27 C -0.07 -0.80 12.08 66.93 0.81 0.01 16 28 O -0.21 -3.24 10.78 -3.79 -0.04 -3.28 16 29 H 0.11 0.29 8.14 -2.39 -0.02 0.27 16 30 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.10 0.61 8.14 -2.38 -0.02 0.59 16 32 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 33 H 0.08 0.48 8.08 -2.39 -0.02 0.46 16 34 H 0.35 4.66 8.37 -89.70 -0.75 3.91 16 35 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.09 1.40 8.14 -2.39 -0.02 1.39 16 38 H 0.08 1.60 7.47 -2.38 -0.02 1.58 16 39 H 0.11 4.02 7.85 -2.40 -0.02 4.00 16 40 H 0.11 4.07 8.14 -2.39 -0.02 4.05 16 41 H 0.28 15.70 8.31 -92.71 -0.77 14.92 16 42 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.04 1.14 6.90 -2.39 -0.02 1.12 16 44 H 0.06 1.23 8.14 -2.39 -0.02 1.22 16 45 H 0.25 0.75 8.06 -2.91 -0.02 0.72 16 Total: -1.00 -81.46 387.89 -0.52 -81.98 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: 0.21 Total: 11.30 kcal Atomic # 6 Polarization: -8.45 SS G_CDS: 6.99 Total: -1.45 kcal Atomic # 7 Polarization: -92.42 SS G_CDS: -8.50 Total: -100.92 kcal Atomic # 8 Polarization: -28.22 SS G_CDS: -0.09 Total: -28.30 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 1.90 Total: 47.46 kcal Atomic # 16 Polarization: -9.02 SS G_CDS: -1.05 Total: -10.07 kcal Total: -81.46 -0.52 -81.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283844015.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.605 kcal (2) G-P(sol) polarization free energy of solvation -81.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds