Wall clock time and date at job start Tue Mar 31 2020 22:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30257 * 125.62211 * 2 1 4 4 C 1.34471 * 108.70578 * 180.14806 * 3 2 1 5 5 C 1.50698 * 126.16884 * 179.82550 * 4 3 2 6 6 N 1.46896 * 109.47177 * 274.68489 * 5 4 3 7 7 C 1.46894 * 111.00230 * 179.97438 * 6 5 4 8 8 H 1.09002 * 110.64024 * 328.14530 * 7 6 5 9 9 C 1.55155 * 110.87283 * 91.39366 * 7 6 5 10 10 C 1.54689 * 101.67730 * 153.77339 * 9 7 6 11 11 N 1.47425 * 104.94131 * 323.27437 * 10 9 7 12 12 C 1.34775 * 125.64873 * 204.07881 * 11 10 9 13 13 O 1.21284 * 120.00295 * 179.69689 * 12 11 10 14 14 C 1.50708 * 119.99957 * 359.68699 * 12 11 10 15 15 S 1.80998 * 109.47052 * 180.02562 * 14 12 11 16 16 C 1.76199 * 100.00013 * 180.02562 * 15 14 12 17 17 H 1.07991 * 119.99794 * 0.02562 * 16 15 14 18 18 C 1.38798 * 119.99771 * 180.02562 * 16 15 14 19 19 N 1.31633 * 120.00311 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99653 * 180.02562 * 18 16 15 21 21 H 1.48511 * 109.47049 * 269.99633 * 20 18 16 22 22 H 1.48494 * 109.47357 * 29.99707 * 20 18 16 23 23 H 1.48502 * 109.47120 * 150.00426 * 20 18 16 24 24 C 1.47017 * 108.70071 * 23.81031 * 11 10 9 25 25 H 1.08994 * 109.88807 * 239.74724 * 24 11 10 26 26 C 1.53004 * 109.88053 * 118.74193 * 24 11 10 27 27 C 1.34331 * 107.66597 * 359.55841 * 4 3 2 28 28 O 1.33970 * 125.61895 * 179.65803 * 2 1 3 29 29 H 1.09001 * 109.47117 * 180.31473 * 1 2 3 30 30 H 1.09002 * 109.47226 * 300.31668 * 1 2 3 31 31 H 1.09000 * 109.47048 * 60.31863 * 1 2 3 32 32 H 1.09001 * 109.47358 * 154.68780 * 5 4 3 33 33 H 1.09002 * 109.47040 * 34.68794 * 5 4 3 34 34 H 1.00902 * 110.99691 * 56.04748 * 6 5 4 35 35 H 1.09001 * 111.00292 * 272.01017 * 9 7 6 36 36 H 1.08998 * 111.00228 * 35.82420 * 9 7 6 37 37 H 1.09002 * 110.38906 * 204.36355 * 10 9 7 38 38 H 1.08994 * 110.24141 * 82.11486 * 10 9 7 39 39 H 1.09005 * 109.46512 * 60.00633 * 14 12 11 40 40 H 1.08991 * 109.47135 * 300.00153 * 14 12 11 41 41 H 0.97001 * 119.99662 * 359.97438 * 19 18 16 42 42 H 1.09003 * 109.47432 * 61.45058 * 26 24 11 43 43 H 1.09000 * 109.47284 * 181.45559 * 26 24 11 44 44 H 1.09007 * 109.47118 * 301.45427 * 26 24 11 45 45 H 1.08003 * 126.44392 * 180.24509 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5521 0.6676 -0.0033 5 6 4.7570 1.5727 -0.0082 6 7 5.0764 1.9553 -1.3900 7 6 6.2481 2.8403 -1.4338 8 1 6.2957 3.4593 -0.5379 9 6 7.5541 2.0203 -1.6045 10 6 8.4827 3.0498 -2.2907 11 7 7.6036 3.8086 -3.1988 12 6 7.9995 4.4709 -4.3038 13 8 7.1848 5.0594 -4.9827 14 6 9.4547 4.4805 -4.6958 15 16 9.6649 5.4470 -6.2115 16 6 11.4062 5.2938 -6.4331 17 1 11.9924 4.7251 -5.7266 18 6 12.0244 5.9042 -7.5156 19 7 11.3099 6.5979 -8.3764 20 14 13.8703 5.7412 -7.7508 21 1 14.5590 6.8534 -7.0478 22 1 14.3279 4.4437 -7.1920 23 1 14.1915 5.7972 -9.1996 24 6 6.2225 3.7177 -2.7031 25 1 5.5866 3.2573 -3.4592 26 6 5.6986 5.1146 -2.3635 27 6 3.5697 -0.6756 0.0045 28 8 2.2872 -1.0890 0.0065 29 1 -0.3633 -1.0277 0.0056 30 1 -0.3634 0.5187 0.8871 31 1 -0.3633 0.5089 -0.8928 32 1 5.6068 1.0488 0.4294 33 1 4.5417 2.4674 0.5761 34 1 4.2818 2.3855 -1.8389 35 1 7.9533 1.7154 -0.6371 36 1 7.3912 1.1555 -2.2477 37 1 9.2628 2.5399 -2.8560 38 1 8.9241 3.7136 -1.5474 39 1 9.7915 3.4580 -4.8668 40 1 10.0436 4.9280 -3.8953 41 1 10.3513 6.6822 -8.2544 42 1 5.6953 5.7300 -3.2631 43 1 4.6841 5.0370 -1.9725 44 1 6.3433 5.5719 -1.6128 45 1 4.4469 -1.3057 0.0081 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283844017.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:25 Heat of formation + Delta-G solvation = -13.862363 kcal Electronic energy + Delta-G solvation = -26174.518764 eV Core-core repulsion = 22319.760732 eV Total energy + Delta-G solvation = -3854.758032 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.71973 -40.20964 -37.90231 -36.08212 -34.61467 -32.74895 -32.52035 -31.71181 -30.87443 -28.91726 -28.13606 -26.29355 -24.85150 -24.41570 -22.90067 -21.98199 -21.46000 -20.86956 -19.07593 -18.15818 -17.52736 -17.21195 -16.85303 -16.43146 -16.00666 -15.31803 -15.09291 -14.94703 -14.52807 -14.19162 -14.01941 -13.90947 -13.83811 -13.59317 -13.52406 -13.13350 -12.97450 -12.78298 -12.60052 -12.38564 -12.35344 -12.04669 -11.83191 -11.78386 -11.52591 -11.49982 -11.21703 -10.94892 -10.90605 -10.83631 -10.18745 -9.56977 -9.44554 -9.19877 -9.00510 -8.87329 -8.55907 -8.20923 -6.66202 -6.61531 -3.99218 1.05791 2.16954 2.36369 2.77843 2.99300 3.32585 3.39204 3.43482 3.52505 3.56985 3.92287 4.12320 4.25889 4.33882 4.39192 4.50254 4.74987 4.82776 4.88708 4.94022 4.97933 5.05729 5.08987 5.14886 5.23111 5.24630 5.26838 5.36725 5.43021 5.45809 5.51216 5.52284 5.55578 5.65816 5.78794 5.85778 5.91591 5.95260 6.02747 6.18830 6.44712 6.60622 6.89040 7.34013 7.62363 7.93157 8.49243 8.50954 9.27923 10.82470 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.029506 B = 0.001812 C = 0.001772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.731198 B =15450.909563 C =15793.268571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.189 3.811 3 N -0.481 5.481 4 C -0.013 4.013 5 C 0.143 3.857 6 N -0.673 5.673 7 C 0.078 3.922 8 H 0.067 0.933 9 C -0.121 4.121 10 C 0.099 3.901 11 N -0.619 5.619 12 C 0.549 3.451 13 O -0.515 6.515 14 C -0.124 4.124 15 S -0.116 6.116 16 C -0.607 4.607 17 H 0.066 0.934 18 C 0.035 3.965 19 N -0.884 5.884 20 Si 1.087 2.913 21 H -0.284 1.284 22 H -0.287 1.287 23 H -0.280 1.280 24 C 0.137 3.863 25 H 0.081 0.919 26 C -0.165 4.165 27 C -0.055 4.055 28 O -0.204 6.204 29 H 0.087 0.913 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.090 0.910 33 H 0.051 0.949 34 H 0.350 0.650 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.068 0.932 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.278 0.722 42 H 0.076 0.924 43 H 0.059 0.941 44 H 0.056 0.944 45 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.977 -15.795 23.010 32.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.018 4.018 3 N -0.211 5.211 4 C -0.133 4.133 5 C 0.013 3.987 6 N -0.306 5.306 7 C -0.032 4.032 8 H 0.084 0.916 9 C -0.160 4.160 10 C -0.024 4.024 11 N -0.356 5.356 12 C 0.337 3.663 13 O -0.389 6.389 14 C -0.275 4.275 15 S 0.110 5.890 16 C -0.755 4.755 17 H 0.084 0.916 18 C -0.175 4.175 19 N -0.519 5.519 20 Si 0.913 3.087 21 H -0.211 1.211 22 H -0.213 1.213 23 H -0.205 1.205 24 C 0.033 3.967 25 H 0.099 0.901 26 C -0.224 4.224 27 C -0.126 4.126 28 O -0.091 6.091 29 H 0.106 0.894 30 H 0.115 0.885 31 H 0.116 0.884 32 H 0.109 0.891 33 H 0.069 0.931 34 H 0.169 0.831 35 H 0.099 0.901 36 H 0.106 0.894 37 H 0.099 0.901 38 H 0.086 0.914 39 H 0.109 0.891 40 H 0.109 0.891 41 H 0.090 0.910 42 H 0.095 0.905 43 H 0.078 0.922 44 H 0.075 0.925 45 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -16.818 -14.413 20.802 30.386 hybrid contribution -0.101 -1.136 2.273 2.543 sum -16.919 -15.550 23.075 32.566 Atomic orbital electron populations 1.20256 0.81321 1.04739 1.05134 1.26310 0.96555 0.78625 1.00320 1.70312 1.01714 1.30441 1.18664 1.21551 0.92720 0.92863 1.06145 1.20160 0.91859 0.96391 0.90255 1.60567 1.08266 1.45747 1.16012 1.22637 0.91291 0.92398 0.96896 0.91555 1.22809 0.93688 0.98218 1.01271 1.22284 0.93870 0.93399 0.92887 1.48449 1.07931 1.53223 1.26029 1.19974 0.90512 0.77407 0.78417 1.90694 1.54526 1.42694 1.50952 1.23292 0.94289 1.05354 1.04554 1.84818 1.11714 1.66491 1.25983 1.23724 0.91586 1.42657 1.17537 0.91590 1.26054 1.07354 0.92635 0.91492 1.70768 1.09315 1.36224 1.35557 0.83290 0.72539 0.76163 0.76690 1.21060 1.21301 1.20500 1.21537 0.84593 0.95716 0.94870 0.90101 1.22184 1.00277 0.96814 1.03079 1.24802 0.84797 0.96147 1.06893 1.84464 1.17060 1.37794 1.69734 0.89377 0.88536 0.88419 0.89125 0.93123 0.83067 0.90135 0.89443 0.90082 0.91418 0.89061 0.89090 0.90953 0.90462 0.92161 0.92497 0.76718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.22 10.51 36.00 0.38 0.16 16 2 C 0.19 1.56 8.34 -12.95 -0.11 1.45 16 3 N -0.48 -4.85 11.29 -7.36 -0.08 -4.93 16 4 C -0.01 -0.12 6.62 -82.82 -0.55 -0.66 16 5 C 0.14 1.06 6.09 -4.98 -0.03 1.03 16 6 N -0.67 -5.81 6.34 -106.06 -0.67 -6.48 16 7 C 0.08 0.70 2.81 -65.88 -0.19 0.51 16 8 H 0.07 0.55 7.54 -51.93 -0.39 0.16 16 9 C -0.12 -1.01 6.76 -24.70 -0.17 -1.18 16 10 C 0.10 1.06 6.68 -2.65 -0.02 1.05 16 11 N -0.62 -9.04 3.07 -163.15 -0.50 -9.54 16 12 C 0.55 10.71 7.66 -10.98 -0.08 10.62 16 13 O -0.51 -11.92 14.89 5.55 0.08 -11.84 16 14 C -0.12 -2.59 5.17 36.01 0.19 -2.40 16 15 S -0.12 -3.19 19.60 -107.50 -2.11 -5.29 16 16 C -0.61 -17.66 9.50 30.94 0.29 -17.37 16 17 H 0.07 1.84 7.80 -52.49 -0.41 1.43 16 18 C 0.04 1.03 5.49 -17.43 -0.10 0.93 16 19 N -0.88 -27.74 13.67 55.49 0.76 -26.98 16 20 Si 1.09 25.14 29.92 -169.99 -5.09 20.05 16 21 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 22 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 C 0.14 1.70 2.96 -66.95 -0.20 1.50 16 25 H 0.08 1.12 7.90 -51.93 -0.41 0.71 16 26 C -0.17 -2.06 9.11 37.16 0.34 -1.72 16 27 C -0.05 -0.41 12.08 29.35 0.35 -0.06 16 28 O -0.20 -1.74 10.78 5.35 0.06 -1.69 16 29 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.05 0.39 8.08 -51.93 -0.42 -0.03 16 34 H 0.35 3.34 8.31 -39.29 -0.33 3.02 16 35 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.08 0.86 7.48 -51.93 -0.39 0.47 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.09 1.79 7.84 -51.91 -0.41 1.38 16 40 H 0.09 1.78 8.14 -51.92 -0.42 1.35 16 41 H 0.28 8.92 7.12 -40.82 -0.29 8.63 16 42 H 0.08 1.21 6.87 -51.93 -0.36 0.85 16 43 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 45 H 0.22 0.88 8.06 -52.48 -0.42 0.46 16 LS Contribution 389.09 15.07 5.86 5.86 Total: -1.00 -37.11 389.09 -8.42 -45.52 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -6.85 Total: 1.45 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: 0.12 Total: -6.14 kcal Atomic # 7 Polarization: -47.44 SS G_CDS: -0.50 Total: -47.94 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: 0.14 Total: -13.52 kcal Atomic # 14 Polarization: 25.14 SS G_CDS: -5.09 Total: 20.05 kcal Atomic # 16 Polarization: -3.19 SS G_CDS: -2.11 Total: -5.29 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -37.11 -8.42 -45.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283844017.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.661 kcal (2) G-P(sol) polarization free energy of solvation -37.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds