Wall clock time and date at job start Tue Mar 31 2020 22:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30257 * 125.62211 * 2 1 4 4 C 1.34471 * 108.70578 * 180.14806 * 3 2 1 5 5 C 1.50698 * 126.16884 * 179.82550 * 4 3 2 6 6 N 1.46896 * 109.47177 * 274.68489 * 5 4 3 7 7 C 1.46894 * 111.00230 * 179.97438 * 6 5 4 8 8 H 1.09002 * 110.64024 * 328.14530 * 7 6 5 9 9 C 1.55155 * 110.87283 * 91.39366 * 7 6 5 10 10 C 1.54689 * 101.67730 * 153.77339 * 9 7 6 11 11 N 1.47425 * 104.94131 * 323.27437 * 10 9 7 12 12 C 1.34775 * 125.64873 * 204.07881 * 11 10 9 13 13 O 1.21284 * 120.00295 * 179.69689 * 12 11 10 14 14 C 1.50708 * 119.99957 * 359.68699 * 12 11 10 15 15 S 1.80998 * 109.47052 * 180.02562 * 14 12 11 16 16 C 1.76199 * 100.00013 * 180.02562 * 15 14 12 17 17 H 1.07991 * 119.99794 * 0.02562 * 16 15 14 18 18 C 1.38798 * 119.99771 * 180.02562 * 16 15 14 19 19 N 1.31633 * 120.00311 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99653 * 180.02562 * 18 16 15 21 21 H 1.48511 * 109.47049 * 269.99633 * 20 18 16 22 22 H 1.48494 * 109.47357 * 29.99707 * 20 18 16 23 23 H 1.48502 * 109.47120 * 150.00426 * 20 18 16 24 24 C 1.47017 * 108.70071 * 23.81031 * 11 10 9 25 25 H 1.08994 * 109.88807 * 239.74724 * 24 11 10 26 26 C 1.53004 * 109.88053 * 118.74193 * 24 11 10 27 27 C 1.34331 * 107.66597 * 359.55841 * 4 3 2 28 28 O 1.33970 * 125.61895 * 179.65803 * 2 1 3 29 29 H 1.09001 * 109.47117 * 180.31473 * 1 2 3 30 30 H 1.09002 * 109.47226 * 300.31668 * 1 2 3 31 31 H 1.09000 * 109.47048 * 60.31863 * 1 2 3 32 32 H 1.09001 * 109.47358 * 154.68780 * 5 4 3 33 33 H 1.09002 * 109.47040 * 34.68794 * 5 4 3 34 34 H 1.00902 * 110.99691 * 56.04748 * 6 5 4 35 35 H 1.09001 * 111.00292 * 272.01017 * 9 7 6 36 36 H 1.08998 * 111.00228 * 35.82420 * 9 7 6 37 37 H 1.09002 * 110.38906 * 204.36355 * 10 9 7 38 38 H 1.08994 * 110.24141 * 82.11486 * 10 9 7 39 39 H 1.09005 * 109.46512 * 60.00633 * 14 12 11 40 40 H 1.08991 * 109.47135 * 300.00153 * 14 12 11 41 41 H 0.97001 * 119.99662 * 359.97438 * 19 18 16 42 42 H 1.09003 * 109.47432 * 61.45058 * 26 24 11 43 43 H 1.09000 * 109.47284 * 181.45559 * 26 24 11 44 44 H 1.09007 * 109.47118 * 301.45427 * 26 24 11 45 45 H 1.08003 * 126.44392 * 180.24509 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5521 0.6676 -0.0033 5 6 4.7570 1.5727 -0.0082 6 7 5.0764 1.9553 -1.3900 7 6 6.2481 2.8403 -1.4338 8 1 6.2957 3.4593 -0.5379 9 6 7.5541 2.0203 -1.6045 10 6 8.4827 3.0498 -2.2907 11 7 7.6036 3.8086 -3.1988 12 6 7.9995 4.4709 -4.3038 13 8 7.1848 5.0594 -4.9827 14 6 9.4547 4.4805 -4.6958 15 16 9.6649 5.4470 -6.2115 16 6 11.4062 5.2938 -6.4331 17 1 11.9924 4.7251 -5.7266 18 6 12.0244 5.9042 -7.5156 19 7 11.3099 6.5979 -8.3764 20 14 13.8703 5.7412 -7.7508 21 1 14.5590 6.8534 -7.0478 22 1 14.3279 4.4437 -7.1920 23 1 14.1915 5.7972 -9.1996 24 6 6.2225 3.7177 -2.7031 25 1 5.5866 3.2573 -3.4592 26 6 5.6986 5.1146 -2.3635 27 6 3.5697 -0.6756 0.0045 28 8 2.2872 -1.0890 0.0065 29 1 -0.3633 -1.0277 0.0056 30 1 -0.3634 0.5187 0.8871 31 1 -0.3633 0.5089 -0.8928 32 1 5.6068 1.0488 0.4294 33 1 4.5417 2.4674 0.5761 34 1 4.2818 2.3855 -1.8389 35 1 7.9533 1.7154 -0.6371 36 1 7.3912 1.1555 -2.2477 37 1 9.2628 2.5399 -2.8560 38 1 8.9241 3.7136 -1.5474 39 1 9.7915 3.4580 -4.8668 40 1 10.0436 4.9280 -3.8953 41 1 10.3513 6.6822 -8.2544 42 1 5.6953 5.7300 -3.2631 43 1 4.6841 5.0370 -1.9725 44 1 6.3433 5.5719 -1.6128 45 1 4.4469 -1.3057 0.0081 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283844017.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:25 Heat of formation + Delta-G solvation = -42.827240 kcal Electronic energy + Delta-G solvation = -26175.774776 eV Core-core repulsion = 22319.760732 eV Total energy + Delta-G solvation = -3856.014043 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.28630 -41.38354 -39.10995 -36.86854 -35.34888 -34.75667 -33.44670 -32.64046 -31.88446 -30.15751 -28.85744 -27.09132 -26.98891 -25.19648 -24.00146 -22.55684 -22.04843 -21.71552 -20.68560 -19.90235 -18.23461 -18.10410 -17.72316 -17.55066 -16.95855 -16.62055 -16.33545 -15.83885 -15.75937 -15.56572 -15.07306 -14.92772 -14.74730 -14.61299 -14.44788 -14.09804 -13.92422 -13.89509 -13.85763 -13.50414 -13.43702 -13.19120 -12.99840 -12.77077 -12.74683 -12.39934 -12.20416 -11.96436 -11.94171 -11.73100 -11.57917 -11.53039 -11.11148 -10.99927 -10.33761 -9.81484 -9.74640 -9.49696 -8.93694 -8.89294 -6.29216 0.50919 1.12271 1.46531 1.50828 1.57547 1.61339 1.79471 1.88787 1.96319 2.33132 3.00473 3.01660 3.06089 3.25924 3.29896 3.57908 3.73092 3.82226 3.96108 4.03130 4.09175 4.19458 4.27078 4.30252 4.34988 4.43936 4.48960 4.55646 4.61297 4.63810 4.65424 4.74009 4.84875 4.91352 4.95346 5.00704 5.07010 5.12772 5.22153 5.35945 5.36701 5.63438 5.94017 6.13362 6.14315 6.32916 6.77128 7.02385 7.05666 8.49692 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.029506 B = 0.001812 C = 0.001772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.731198 B =15450.909563 C =15793.268571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.180 3.820 3 N -0.515 5.515 4 C -0.036 4.036 5 C 0.148 3.852 6 N -0.676 5.676 7 C 0.093 3.907 8 H 0.084 0.916 9 C -0.109 4.109 10 C 0.087 3.913 11 N -0.610 5.610 12 C 0.545 3.455 13 O -0.564 6.564 14 C -0.099 4.099 15 S -0.196 6.196 16 C -0.613 4.613 17 H 0.076 0.924 18 C -0.019 4.019 19 N -0.913 5.913 20 Si 1.140 2.860 21 H -0.267 1.267 22 H -0.261 1.261 23 H -0.279 1.279 24 C 0.132 3.868 25 H 0.061 0.939 26 C -0.159 4.159 27 C -0.054 4.054 28 O -0.214 6.214 29 H 0.105 0.895 30 H 0.107 0.893 31 H 0.103 0.897 32 H 0.115 0.885 33 H 0.047 0.953 34 H 0.342 0.658 35 H 0.117 0.883 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.108 0.892 40 H 0.109 0.891 41 H 0.260 0.740 42 H 0.037 0.963 43 H 0.081 0.919 44 H 0.065 0.935 45 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.788 -18.013 25.979 35.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.027 4.027 3 N -0.247 5.247 4 C -0.155 4.155 5 C 0.019 3.981 6 N -0.308 5.308 7 C -0.018 4.018 8 H 0.102 0.898 9 C -0.147 4.147 10 C -0.035 4.035 11 N -0.345 5.345 12 C 0.333 3.667 13 O -0.443 6.443 14 C -0.250 4.250 15 S 0.031 5.969 16 C -0.760 4.760 17 H 0.094 0.906 18 C -0.222 4.222 19 N -0.548 5.548 20 Si 0.957 3.043 21 H -0.192 1.192 22 H -0.186 1.186 23 H -0.204 1.204 24 C 0.028 3.972 25 H 0.079 0.921 26 C -0.217 4.217 27 C -0.125 4.125 28 O -0.101 6.101 29 H 0.124 0.876 30 H 0.126 0.874 31 H 0.121 0.879 32 H 0.133 0.867 33 H 0.066 0.934 34 H 0.161 0.839 35 H 0.135 0.865 36 H 0.099 0.901 37 H 0.103 0.897 38 H 0.107 0.893 39 H 0.126 0.874 40 H 0.127 0.873 41 H 0.071 0.929 42 H 0.056 0.944 43 H 0.100 0.900 44 H 0.084 0.916 45 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -15.646 -16.673 23.846 33.036 hybrid contribution -0.604 -0.522 1.469 1.671 sum -16.250 -17.194 25.314 34.648 Atomic orbital electron populations 1.20466 0.78885 1.06194 1.05862 1.27113 0.97925 0.78254 0.99368 1.70304 1.02736 1.31594 1.20022 1.21852 0.92769 0.93746 1.07123 1.20225 0.92285 0.96327 0.89268 1.60611 1.07831 1.45352 1.16986 1.22534 0.91941 0.92124 0.95167 0.89818 1.22805 0.92392 0.96875 1.02625 1.22692 0.94032 0.94081 0.92674 1.48412 1.09875 1.51510 1.24668 1.19719 0.89483 0.77925 0.79572 1.90678 1.55291 1.45233 1.53060 1.23152 0.96018 1.04750 1.01107 1.85079 1.12068 1.68798 1.30982 1.24049 0.91944 1.42317 1.17719 0.90609 1.27870 1.11911 0.91464 0.90976 1.70891 1.08507 1.38410 1.37023 0.82683 0.66749 0.77861 0.76981 1.19212 1.18573 1.20442 1.21713 0.82910 0.96385 0.96171 0.92073 1.22102 1.01895 0.96226 1.01452 1.25416 0.85226 0.96267 1.05574 1.84479 1.17647 1.38122 1.69851 0.87582 0.87426 0.87888 0.86697 0.93447 0.83941 0.86481 0.90104 0.89725 0.89340 0.87425 0.87314 0.92910 0.94391 0.90028 0.91619 0.73746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.37 10.51 71.23 0.75 0.38 16 2 C 0.18 2.81 8.34 88.34 0.74 3.54 16 3 N -0.52 -10.02 11.29 -291.99 -3.30 -13.32 16 4 C -0.04 -0.58 6.62 41.26 0.27 -0.30 16 5 C 0.15 1.80 6.09 85.56 0.52 2.32 16 6 N -0.68 -10.20 6.34 -489.47 -3.10 -13.30 16 7 C 0.09 1.39 2.81 46.10 0.13 1.52 16 8 H 0.08 1.04 7.54 -2.39 -0.02 1.02 16 9 C -0.11 -1.38 6.76 31.91 0.22 -1.17 16 10 C 0.09 1.59 6.68 86.78 0.58 2.17 16 11 N -0.61 -17.15 3.07 -788.49 -2.42 -19.57 16 12 C 0.55 21.49 7.66 87.66 0.67 22.17 16 13 O -0.56 -27.38 14.89 -3.04 -0.05 -27.42 16 14 C -0.10 -4.10 5.17 71.24 0.37 -3.73 16 15 S -0.20 -11.07 19.60 -56.49 -1.11 -12.18 16 16 C -0.61 -35.78 9.50 67.95 0.65 -35.13 16 17 H 0.08 4.14 7.80 -2.92 -0.02 4.11 16 18 C -0.02 -1.13 5.49 84.86 0.47 -0.66 16 19 N -0.91 -58.68 13.67 21.65 0.30 -58.39 16 20 Si 1.14 49.61 29.92 68.60 2.05 51.67 16 21 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 22 H -0.26 -10.20 7.11 99.48 0.71 -9.50 16 23 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 24 C 0.13 3.16 2.96 45.34 0.13 3.30 16 25 H 0.06 1.73 7.90 -2.39 -0.02 1.71 16 26 C -0.16 -3.91 9.11 71.98 0.66 -3.25 16 27 C -0.05 -0.70 12.08 66.93 0.81 0.10 16 28 O -0.21 -3.38 10.78 -3.78 -0.04 -3.42 16 29 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 30 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.05 0.62 8.08 -2.39 -0.02 0.60 16 34 H 0.34 6.21 8.31 -89.69 -0.75 5.46 16 35 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.08 1.53 7.48 -2.39 -0.02 1.51 16 38 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.11 4.08 7.84 -2.39 -0.02 4.06 16 40 H 0.11 4.10 8.14 -2.40 -0.02 4.08 16 41 H 0.26 17.43 7.12 -92.71 -0.66 16.77 16 42 H 0.04 1.24 6.87 -2.39 -0.02 1.22 16 43 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 45 H 0.25 1.26 8.06 -2.91 -0.02 1.23 16 Total: -1.00 -85.17 389.09 -0.34 -85.51 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: 0.37 Total: 19.16 kcal Atomic # 6 Polarization: -15.70 SS G_CDS: 6.96 Total: -8.75 kcal Atomic # 7 Polarization: -96.05 SS G_CDS: -8.52 Total: -104.57 kcal Atomic # 8 Polarization: -30.76 SS G_CDS: -0.09 Total: -30.84 kcal Atomic # 14 Polarization: 49.61 SS G_CDS: 2.05 Total: 51.67 kcal Atomic # 16 Polarization: -11.07 SS G_CDS: -1.11 Total: -12.18 kcal Total: -85.17 -0.34 -85.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283844017.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.687 kcal (2) G-P(sol) polarization free energy of solvation -85.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds