Wall clock time and date at job start Tue Mar 31 2020 22:30:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50698 * 1
3 3 S 1.77222 * 127.33988 * 2 1
4 4 C 1.72208 * 94.84656 * 179.80763 * 3 2 1
5 5 O 1.21830 * 127.05717 * 180.19931 * 4 3 2
6 6 N 1.34244 * 105.88548 * 0.31929 * 4 3 2
7 7 C 1.46501 * 121.38087 * 179.87668 * 6 4 3
8 8 C 1.50700 * 109.47343 * 269.72233 * 7 6 4
9 9 O 1.21281 * 119.99845 * 0.02562 * 8 7 6
10 10 N 1.34777 * 120.00114 * 179.97438 * 8 7 6
11 11 C 1.46497 * 120.00147 * 179.97438 * 10 8 7
12 12 C 1.53000 * 109.47283 * 180.02562 * 11 10 8
13 13 H 1.08998 * 110.63712 * 303.31622 * 12 11 10
14 14 C 1.55152 * 110.87348 * 180.02562 * 12 11 10
15 15 C 1.54908 * 101.58402 * 206.06519 * 14 12 11
16 16 N 1.47421 * 104.83171 * 37.01059 * 15 14 12
17 17 C 1.36930 * 125.65196 * 155.92330 * 16 15 14
18 18 H 1.08010 * 119.99884 * 353.83921 * 17 16 15
19 19 C 1.38814 * 120.00493 * 173.84367 * 17 16 15
20 20 N 1.31617 * 119.99686 * 6.82718 * 19 17 16
21 21 Si 1.86805 * 120.00178 * 186.82446 * 19 17 16
22 22 H 1.48503 * 109.46880 * 94.98351 * 21 19 17
23 23 H 1.48497 * 109.47026 * 214.98542 * 21 19 17
24 24 H 1.48496 * 109.47076 * 334.98826 * 21 19 17
25 25 C 1.47028 * 108.70242 * 335.87288 * 16 15 14
26 26 C 1.32566 * 127.33978 * 179.97438 * 2 1 3
27 27 C 1.50702 * 121.64590 * 359.97438 * 26 2 1
28 28 H 1.08998 * 109.47561 * 269.99781 * 1 2 3
29 29 H 1.08995 * 109.47183 * 30.00318 * 1 2 3
30 30 H 1.09011 * 109.47226 * 150.00169 * 1 2 3
31 31 H 1.09002 * 109.46995 * 149.71893 * 7 6 4
32 32 H 1.09007 * 109.46737 * 29.72306 * 7 6 4
33 33 H 0.97002 * 119.99834 * 0.02562 * 10 8 7
34 34 H 1.09001 * 109.46788 * 60.00106 * 11 10 8
35 35 H 1.09006 * 109.46829 * 300.00424 * 11 10 8
36 36 H 1.09002 * 111.00809 * 324.14120 * 14 12 11
37 37 H 1.09004 * 111.00417 * 87.94876 * 14 12 11
38 38 H 1.09000 * 110.36815 * 155.84748 * 15 14 12
39 39 H 1.08998 * 110.36563 * 278.17149 * 15 14 12
40 40 H 0.97006 * 119.99480 * 179.97438 * 20 19 17
41 41 H 1.08998 * 109.88132 * 241.64401 * 25 16 15
42 42 H 1.08998 * 109.88414 * 120.48194 * 25 16 15
43 43 H 1.09003 * 109.47059 * 270.02160 * 27 26 2
44 44 H 1.08997 * 109.47320 * 30.02161 * 27 26 2
45 45 H 1.08999 * 109.46852 * 150.02304 * 27 26 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 16 2.5819 1.4090 0.0000
4 6 4.0344 0.4839 0.0058
5 8 5.1759 0.9096 0.0113
6 7 3.6507 -0.8025 0.0002
7 6 4.6312 -1.8910 0.0001
8 6 4.9675 -2.2642 -1.4207
9 8 4.4404 -1.6783 -2.3425
10 7 5.8547 -3.2484 -1.6670
11 6 6.1812 -3.6116 -3.0481
12 6 7.2053 -4.7483 -3.0482
13 1 8.0959 -4.4631 -2.4883
14 6 7.5753 -5.1590 -4.4979
15 6 8.0067 -6.6340 -4.3028
16 7 7.0914 -7.1621 -3.2749
17 6 6.7649 -8.4801 -3.0981
18 1 7.1105 -9.2214 -3.8035
19 6 5.9898 -8.8636 -2.0123
20 7 5.4567 -7.9501 -1.2289
21 14 5.7031 -10.6762 -1.6630
22 1 6.6987 -11.1522 -0.6693
23 1 4.3335 -10.8653 -1.1211
24 1 5.8494 -11.4518 -2.9208
25 6 6.5880 -6.0392 -2.4701
26 6 2.3110 -1.0540 0.0005
27 6 1.7706 -2.4608 0.0017
28 1 -0.3634 0.0000 1.0276
29 1 -0.3633 0.8899 -0.5139
30 1 -0.3634 -0.8901 -0.5139
31 1 4.2132 -2.7566 0.5140
32 1 5.5357 -1.5653 0.5140
33 1 6.2766 -3.7168 -0.9297
34 1 6.5986 -2.7460 -3.5624
35 1 5.2766 -3.9379 -3.5615
36 1 6.7099 -5.0889 -5.1568
37 1 8.4013 -4.5564 -4.8759
38 1 7.8922 -7.1890 -5.2339
39 1 9.0382 -6.6846 -3.9544
40 1 4.9147 -8.2181 -0.4703
41 1 6.8923 -6.1624 -1.4307
42 1 5.5011 -5.9929 -2.5373
43 1 1.6403 -2.7990 1.0297
44 1 0.8096 -2.4813 -0.5121
45 1 2.4712 -3.1195 -0.5116
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001317534930.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:30:01
Heat of formation + Delta-G solvation = -39.791565 kcal
Electronic energy + Delta-G solvation = -27369.412231 eV
Core-core repulsion = 23513.529825 eV
Total energy + Delta-G solvation = -3855.882406 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 0.81 seconds
Orbital eigenvalues (eV)
-42.34833 -40.52958 -39.22244 -38.79143 -36.04243 -34.63238 -34.37125 -32.11346
-31.05755 -30.26135 -29.45479 -27.45337 -26.13156 -25.35997 -24.30454 -22.24025
-21.55260 -21.21299 -20.77627 -19.27148 -18.95367 -18.58849 -18.18676 -17.35046
-16.93210 -16.78827 -16.42204 -16.22175 -15.83966 -15.58001 -14.96826 -14.91541
-14.73538 -14.61539 -14.39500 -14.23799 -13.70874 -13.55587 -13.50701 -13.48132
-13.35747 -13.13433 -12.86879 -12.74699 -12.65701 -12.46500 -12.09243 -11.94467
-11.88861 -11.82843 -11.51260 -11.41487 -11.29499 -11.22523 -10.67179 -10.40981
-10.17757 -8.91063 -8.84883 -7.84757 -5.17122 -0.17728 0.32992 0.72039
1.00942 1.40676 1.47781 1.48788 1.57012 1.59913 2.18031 2.50998
3.33890 3.44627 3.55960 3.66973 3.74017 3.90969 3.96403 4.04380
4.05746 4.08496 4.24179 4.46378 4.53994 4.59068 4.62681 4.63571
4.73961 4.85387 4.87772 4.89258 5.02103 5.02565 5.07009 5.14640
5.30774 5.38436 5.44236 5.48143 5.65135 5.68396 5.77746 6.13513
6.23077 6.39861 7.04271 7.14236 7.80378 8.45388 9.26148
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.015348 B = 0.002682 C = 0.002397
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1823.913499 B =10435.912815 C =11678.831677
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.061 4.061
2 C -0.199 4.199
3 S 0.004 5.996
4 C 0.467 3.533
5 O -0.519 6.519
6 N -0.514 5.514
7 C 0.081 3.919
8 C 0.497 3.503
9 O -0.575 6.575
10 N -0.708 5.708
11 C 0.148 3.852
12 C -0.115 4.115
13 H 0.092 0.908
14 C -0.111 4.111
15 C 0.125 3.875
16 N -0.633 5.633
17 C -0.246 4.246
18 H 0.077 0.923
19 C -0.059 4.059
20 N -0.941 5.941
21 Si 0.972 3.028
22 H -0.288 1.288
23 H -0.293 1.293
24 H -0.273 1.273
25 C 0.198 3.802
26 C 0.087 3.913
27 C -0.099 4.099
28 H 0.095 0.905
29 H 0.078 0.922
30 H 0.096 0.904
31 H 0.158 0.842
32 H 0.136 0.864
33 H 0.415 0.585
34 H 0.072 0.928
35 H 0.048 0.952
36 H 0.065 0.935
37 H 0.100 0.900
38 H 0.041 0.959
39 H 0.028 0.972
40 H 0.248 0.752
41 H 0.017 0.983
42 H 0.010 0.990
43 H 0.112 0.888
44 H 0.108 0.892
45 H 0.060 0.940
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.295 14.307 5.125 17.313
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.120 4.120
2 C -0.318 4.318
3 S 0.248 5.752
4 C 0.151 3.849
5 O -0.403 6.403
6 N -0.233 5.233
7 C -0.048 4.048
8 C 0.283 3.717
9 O -0.455 6.455
10 N -0.359 5.359
11 C 0.024 3.976
12 C -0.135 4.135
13 H 0.110 0.890
14 C -0.150 4.150
15 C 0.000 4.000
16 N -0.359 5.359
17 C -0.375 4.375
18 H 0.095 0.905
19 C -0.253 4.253
20 N -0.590 5.590
21 Si 0.801 3.199
22 H -0.215 1.215
23 H -0.220 1.220
24 H -0.198 1.198
25 C 0.074 3.926
26 C -0.021 4.021
27 C -0.158 4.158
28 H 0.113 0.887
29 H 0.097 0.903
30 H 0.114 0.886
31 H 0.176 0.824
32 H 0.153 0.847
33 H 0.252 0.748
34 H 0.090 0.910
35 H 0.067 0.933
36 H 0.084 0.916
37 H 0.119 0.881
38 H 0.059 0.941
39 H 0.046 0.954
40 H 0.057 0.943
41 H 0.035 0.965
42 H 0.029 0.971
43 H 0.130 0.870
44 H 0.127 0.873
45 H 0.079 0.921
Dipole moment (debyes) X Y Z Total
from point charges -8.246 16.176 4.582 18.726
hybrid contribution 0.676 -2.597 0.427 2.717
sum -7.570 13.579 5.009 16.333
Atomic orbital electron populations
1.20308 0.82909 1.04425 1.04361 1.24007 1.01011 0.90313 1.16514
1.84890 0.97381 1.12224 1.80731 1.21870 0.94850 0.85601 0.82560
1.90910 1.20894 1.72891 1.55627 1.45619 1.06851 1.06589 1.64226
1.21879 0.95720 0.92579 0.94613 1.21135 0.79008 0.79621 0.91962
1.90708 1.53518 1.54055 1.47229 1.45875 1.43711 1.36337 1.09998
1.21165 0.97482 0.96552 0.82368 1.22592 0.98132 0.94248 0.98486
0.89024 1.22669 1.01791 0.95583 0.94914 1.21778 0.92930 0.93652
0.91636 1.44832 1.51670 1.03037 1.36388 1.19411 1.27367 0.83740
1.06988 0.90535 1.25547 1.00395 1.01531 0.97822 1.70130 1.37853
1.32124 1.18877 0.85155 0.76591 0.80243 0.77900 1.21508 1.21965
1.19847 1.20922 0.95025 0.83794 0.92908 1.19734 0.80988 0.99825
1.01595 1.20899 1.02585 0.86933 1.05348 0.88659 0.90293 0.88600
0.82445 0.84653 0.74839 0.91013 0.93338 0.91617 0.88112 0.94070
0.95423 0.94292 0.96522 0.97134 0.86998 0.87323 0.92148
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.06 -0.61 10.10 71.24 0.72 0.11 16
2 C -0.20 -3.65 6.72 24.53 0.16 -3.49 16
3 S 0.00 0.09 22.97 -56.49 -1.30 -1.21 16
4 C 0.47 14.06 8.27 129.87 1.07 15.14 16
5 O -0.52 -18.88 17.55 -4.76 -0.08 -18.97 16
6 N -0.51 -12.93 2.09 -647.48 -1.35 -14.29 16
7 C 0.08 1.79 5.47 85.63 0.47 2.26 16
8 C 0.50 14.67 7.64 87.66 0.67 15.33 16
9 O -0.58 -21.70 16.43 -3.03 -0.05 -21.74 16
10 N -0.71 -19.80 5.40 -463.06 -2.50 -22.30 16
11 C 0.15 4.56 5.01 86.38 0.43 5.00 16
12 C -0.12 -3.73 3.01 -9.61 -0.03 -3.76 16
13 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16
14 C -0.11 -3.41 6.54 31.98 0.21 -3.20 16
15 C 0.12 4.82 7.23 86.86 0.63 5.45 16
16 N -0.63 -31.14 3.39 -691.99 -2.35 -33.49 16
17 C -0.25 -13.41 10.26 84.04 0.86 -12.54 16
18 H 0.08 4.05 7.84 -2.91 -0.02 4.03 16
19 C -0.06 -3.23 5.48 84.86 0.47 -2.76 16
20 N -0.94 -52.69 10.36 21.65 0.22 -52.47 16
21 Si 0.97 44.07 29.56 68.60 2.03 46.10 16
22 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16
23 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16
24 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16
25 C 0.20 8.86 4.66 86.73 0.40 9.27 16
26 C 0.09 1.77 6.59 40.71 0.27 2.04 16
27 C -0.10 -1.45 9.07 71.24 0.65 -0.80 16
28 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16
29 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16
30 H 0.10 0.70 6.77 -2.38 -0.02 0.69 16
31 H 0.16 2.44 6.83 -2.39 -0.02 2.42 16
32 H 0.14 2.72 7.80 -2.38 -0.02 2.70 16
33 H 0.42 10.17 8.33 -92.71 -0.77 9.40 16
34 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16
35 H 0.05 1.71 8.06 -2.38 -0.02 1.69 16
36 H 0.07 2.06 8.05 -2.39 -0.02 2.04 16
37 H 0.10 2.40 8.14 -2.38 -0.02 2.38 16
38 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16
39 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16
40 H 0.25 13.43 8.31 -92.70 -0.77 12.66 16
41 H 0.02 0.82 7.36 -2.39 -0.02 0.80 16
42 H 0.01 0.54 7.17 -2.39 -0.02 0.52 16
43 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16
44 H 0.11 1.22 6.69 -2.39 -0.02 1.20 16
45 H 0.06 1.13 6.70 -2.39 -0.02 1.11 16
Total: -1.00 -76.86 380.16 1.85 -75.02
By element:
Atomic # 1 Polarization: 15.07 SS G_CDS: 0.24 Total: 15.31 kcal
Atomic # 6 Polarization: 21.05 SS G_CDS: 6.98 Total: 28.03 kcal
Atomic # 7 Polarization: -116.56 SS G_CDS: -5.98 Total: -122.54 kcal
Atomic # 8 Polarization: -40.58 SS G_CDS: -0.13 Total: -40.71 kcal
Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal
Atomic # 16 Polarization: 0.09 SS G_CDS: -1.30 Total: -1.21 kcal
Total: -76.86 1.85 -75.02 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001317534930.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 35.227 kcal
(2) G-P(sol) polarization free energy of solvation -76.864 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.637 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.845 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.019 kcal
(6) G-S(sol) free energy of system = (1) + (5) -39.792 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.81 seconds