Wall clock time and date at job start Tue Mar 31 2020 22:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30256 * 125.62250 * 2 1 4 4 C 1.34481 * 108.70234 * 180.14675 * 3 2 1 5 5 C 1.50698 * 126.16488 * 179.82688 * 4 3 2 6 6 N 1.46907 * 109.46829 * 274.68942 * 5 4 3 7 7 C 1.46904 * 110.99692 * 180.02562 * 6 5 4 8 8 C 1.52998 * 109.46592 * 179.97438 * 7 6 5 9 9 H 1.09006 * 110.00099 * 64.64601 * 8 7 6 10 10 C 1.54317 * 109.77089 * 185.79558 * 8 7 6 11 11 C 1.55155 * 102.86329 * 141.88605 * 10 8 7 12 12 C 1.54905 * 101.58269 * 324.30621 * 11 10 8 13 13 N 1.47014 * 109.88728 * 303.54656 * 8 7 6 14 14 C 1.34777 * 125.64925 * 61.67606 * 13 8 7 15 15 O 1.21278 * 119.99854 * 359.72596 * 14 13 8 16 16 C 1.50703 * 120.00161 * 179.71903 * 14 13 8 17 17 S 1.81002 * 109.47178 * 180.02562 * 16 14 13 18 18 C 1.76198 * 100.00092 * 180.02562 * 17 16 14 19 19 H 1.08004 * 120.00019 * 0.02562 * 18 17 16 20 20 C 1.38795 * 119.99810 * 179.97438 * 18 17 16 21 21 N 1.31635 * 119.99575 * 180.02562 * 20 18 17 22 22 Si 1.86793 * 120.00242 * 359.97438 * 20 18 17 23 23 H 1.48504 * 109.47244 * 90.00194 * 22 20 18 24 24 H 1.48498 * 109.47205 * 209.99923 * 22 20 18 25 25 H 1.48496 * 109.47344 * 330.00405 * 22 20 18 26 26 C 1.34324 * 107.66512 * 359.56055 * 4 3 2 27 27 O 1.33964 * 125.62061 * 179.65725 * 2 1 3 28 28 H 1.08998 * 109.47129 * 180.32112 * 1 2 3 29 29 H 1.09003 * 109.46970 * 300.32084 * 1 2 3 30 30 H 1.09004 * 109.47039 * 60.31537 * 1 2 3 31 31 H 1.08992 * 109.47233 * 154.69309 * 5 4 3 32 32 H 1.09002 * 109.47357 * 34.68182 * 5 4 3 33 33 H 1.00903 * 111.00001 * 56.04669 * 6 5 4 34 34 H 1.08998 * 109.47269 * 60.00249 * 7 6 5 35 35 H 1.08993 * 109.47131 * 299.99501 * 7 6 5 36 36 H 1.09000 * 110.92706 * 23.47471 * 10 8 7 37 37 H 1.09001 * 110.74719 * 260.21581 * 10 8 7 38 38 H 1.08999 * 111.00772 * 206.22692 * 11 10 8 39 39 H 1.09008 * 111.03850 * 82.39448 * 11 10 8 40 40 H 1.09004 * 110.36707 * 278.16698 * 12 11 10 41 41 H 1.09003 * 110.46645 * 155.89221 * 12 11 10 42 42 H 1.09002 * 109.47152 * 60.00245 * 16 14 13 43 43 H 1.09001 * 109.46980 * 300.00345 * 16 14 13 44 44 H 0.97007 * 119.99682 * 180.02562 * 21 20 18 45 45 H 1.07997 * 126.43850 * 180.24165 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2657 1.0588 0.0000 4 6 3.5522 0.6674 -0.0033 5 6 4.7571 1.5726 -0.0081 6 7 5.0765 1.9552 -1.3900 7 6 6.2489 2.8393 -1.4338 8 6 6.5502 3.2149 -2.8861 9 1 5.7293 3.8025 -3.2972 10 6 7.8632 4.0230 -2.9546 11 6 8.5244 3.4978 -4.2562 12 6 8.1140 2.0043 -4.2329 13 7 6.7443 1.9978 -3.6875 14 6 5.8212 1.0378 -3.8941 15 8 4.7208 1.1370 -3.3938 16 6 6.1561 -0.1587 -4.7468 17 16 4.7213 -1.2587 -4.8334 18 6 5.3744 -2.5335 -5.8595 19 1 6.3887 -2.4665 -6.2243 20 6 4.5856 -3.6241 -6.1980 21 7 5.0738 -4.5768 -6.9642 22 14 2.8320 -3.7410 -5.5654 23 1 1.9122 -3.0905 -6.5330 24 1 2.4563 -5.1691 -5.4088 25 1 2.7331 -3.0561 -4.2515 26 6 3.5697 -0.6757 0.0045 27 8 2.2872 -1.0890 0.0065 28 1 -0.3633 -1.0276 0.0058 29 1 -0.3633 0.5188 0.8871 30 1 -0.3633 0.5089 -0.8928 31 1 5.6069 1.0487 0.4294 32 1 4.5418 2.4673 0.5761 33 1 4.2818 2.3855 -1.8390 34 1 7.1089 2.3238 -1.0064 35 1 6.0444 3.7427 -0.8595 36 1 8.4940 3.8147 -2.0904 37 1 7.6561 5.0904 -3.0308 38 1 9.6083 3.6059 -4.2150 39 1 8.1169 4.0014 -5.1329 40 1 8.7829 1.4371 -3.5855 41 1 8.1226 1.5909 -5.2415 42 1 6.9984 -0.6935 -4.3077 43 1 6.4202 0.1732 -5.7509 44 1 4.5224 -5.3389 -7.2012 45 1 4.4469 -1.3058 0.0081 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319048435.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:48 Heat of formation + Delta-G solvation = 9.925549 kcal Electronic energy + Delta-G solvation = -27713.197509 eV Core-core repulsion = 23859.470998 eV Total energy + Delta-G solvation = -3853.726511 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.07391 -39.92903 -37.04722 -36.16716 -34.30041 -32.39213 -32.29826 -31.65729 -30.22238 -28.63609 -27.81233 -25.78125 -25.55436 -23.82069 -22.22102 -21.38459 -21.27818 -20.79381 -18.83932 -17.62292 -16.98841 -16.81957 -16.51080 -16.28836 -15.42439 -14.96374 -14.83673 -14.65362 -14.48281 -14.08260 -13.95405 -13.79617 -13.64180 -13.19102 -13.09422 -12.90909 -12.79160 -12.68266 -12.45463 -12.30168 -11.84327 -11.73128 -11.52951 -11.38905 -11.20724 -11.15459 -10.98320 -10.92468 -10.77380 -10.49617 -10.36674 -9.81109 -9.05612 -8.95691 -8.54137 -8.47139 -8.39163 -7.79604 -6.82310 -6.24580 -3.93857 1.71401 2.79746 2.84751 2.99636 3.28812 3.35420 3.36950 3.53998 3.71225 4.09282 4.30073 4.37162 4.40441 4.65169 4.75737 4.87056 4.90836 5.04237 5.07475 5.14790 5.20798 5.27396 5.31438 5.34349 5.38710 5.47859 5.52654 5.55030 5.56469 5.61177 5.66912 5.71531 5.78690 5.88007 6.00267 6.05746 6.09113 6.15576 6.15849 6.47635 6.59537 7.18398 7.69482 7.90889 7.95164 7.98946 8.46445 8.85672 9.22408 10.84925 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.006862 B = 0.005556 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4079.198335 B = 5038.065546 C = 8669.183129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C 0.182 3.818 3 N -0.481 5.481 4 C -0.007 4.007 5 C 0.142 3.858 6 N -0.651 5.651 7 C 0.050 3.950 8 C 0.143 3.857 9 H 0.069 0.931 10 C -0.125 4.125 11 C -0.132 4.132 12 C 0.100 3.900 13 N -0.617 5.617 14 C 0.546 3.454 15 O -0.475 6.475 16 C -0.114 4.114 17 S -0.139 6.139 18 C -0.519 4.519 19 H 0.086 0.914 20 C 0.096 3.904 21 N -0.883 5.883 22 Si 0.856 3.144 23 H -0.268 1.268 24 H -0.275 1.275 25 H -0.236 1.236 26 C -0.045 4.045 27 O -0.202 6.202 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.095 0.905 31 H 0.078 0.922 32 H 0.035 0.965 33 H 0.359 0.641 34 H 0.070 0.930 35 H 0.030 0.970 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.064 0.936 41 H 0.076 0.924 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.270 0.730 45 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.821 16.509 13.768 21.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.025 4.025 3 N -0.212 5.212 4 C -0.126 4.126 5 C 0.013 3.987 6 N -0.287 5.287 7 C -0.080 4.080 8 C 0.038 3.962 9 H 0.087 0.913 10 C -0.164 4.164 11 C -0.170 4.170 12 C -0.024 4.024 13 N -0.355 5.355 14 C 0.333 3.667 15 O -0.345 6.345 16 C -0.265 4.265 17 S 0.087 5.913 18 C -0.667 4.667 19 H 0.104 0.896 20 C -0.113 4.113 21 N -0.520 5.520 22 Si 0.681 3.319 23 H -0.193 1.193 24 H -0.201 1.201 25 H -0.160 1.160 26 C -0.116 4.116 27 O -0.088 6.088 28 H 0.104 0.896 29 H 0.110 0.890 30 H 0.113 0.887 31 H 0.097 0.903 32 H 0.054 0.946 33 H 0.182 0.818 34 H 0.088 0.912 35 H 0.048 0.952 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.100 0.900 39 H 0.094 0.906 40 H 0.083 0.917 41 H 0.094 0.906 42 H 0.107 0.893 43 H 0.106 0.894 44 H 0.079 0.921 45 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 1.153 16.398 14.278 21.773 hybrid contribution 0.793 -0.397 -0.313 0.940 sum 1.946 16.001 13.965 21.327 Atomic orbital electron populations 1.20178 0.81813 1.04503 1.04620 1.26121 0.96379 0.78875 1.01169 1.70206 1.01814 1.30475 1.18738 1.21368 0.92494 0.92749 1.06013 1.20074 0.91638 0.95582 0.91433 1.61031 1.08624 1.45702 1.13363 1.22424 0.95150 0.94721 0.95735 1.21477 0.97498 0.86362 0.90864 0.91294 1.22637 0.95583 0.99590 0.98576 1.22762 1.00890 0.95382 0.97987 1.22252 0.83976 0.96664 0.99466 1.48376 1.13179 1.21885 1.52101 1.19645 0.84086 0.82182 0.80780 1.90625 1.21280 1.76314 1.46314 1.23229 1.04471 0.97270 1.01502 1.84749 1.17300 1.21770 1.67464 1.22362 1.03359 1.06545 1.34437 0.89591 1.24693 0.98515 0.94263 0.93783 1.69949 1.37256 1.09794 1.34983 0.86745 0.84664 0.78391 0.82116 1.19329 1.20076 1.15953 1.24704 0.84631 0.96176 1.06113 1.84439 1.17128 1.37636 1.69600 0.89575 0.88994 0.88676 0.90324 0.94648 0.81847 0.91169 0.95199 0.90474 0.90299 0.90030 0.90632 0.91736 0.90576 0.89258 0.89384 0.92060 0.77115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.54 10.51 36.01 0.38 -0.16 16 2 C 0.18 2.76 8.34 -12.95 -0.11 2.65 16 3 N -0.48 -8.00 11.29 -7.36 -0.08 -8.08 16 4 C -0.01 -0.10 6.62 -82.81 -0.55 -0.65 16 5 C 0.14 1.92 6.23 -4.97 -0.03 1.89 16 6 N -0.65 -9.57 3.29 -115.06 -0.38 -9.95 16 7 C 0.05 0.57 5.27 -3.82 -0.02 0.55 16 8 C 0.14 1.60 3.29 -66.96 -0.22 1.38 16 9 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 10 C -0.13 -0.96 6.47 -24.90 -0.16 -1.12 16 11 C -0.13 -1.02 7.08 -24.59 -0.17 -1.19 16 12 C 0.10 1.06 6.69 -2.53 -0.02 1.04 16 13 N -0.62 -8.47 3.07 -163.02 -0.50 -8.97 16 14 C 0.55 9.97 7.44 -10.98 -0.08 9.89 16 15 O -0.48 -9.90 11.99 5.56 0.07 -9.83 16 16 C -0.11 -2.31 5.16 36.01 0.19 -2.12 16 17 S -0.14 -3.59 18.55 -107.50 -1.99 -5.58 16 18 C -0.52 -15.21 10.04 30.94 0.31 -14.90 16 19 H 0.09 2.64 8.03 -52.48 -0.42 2.21 16 20 C 0.10 2.84 5.50 -17.43 -0.10 2.75 16 21 N -0.88 -27.02 13.97 55.49 0.78 -26.24 16 22 Si 0.86 22.25 27.74 -169.99 -4.71 17.53 16 23 H -0.27 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 25 H -0.24 -6.16 6.74 56.52 0.38 -5.78 16 26 C -0.04 -0.71 12.08 29.35 0.35 -0.35 16 27 O -0.20 -3.34 10.77 5.39 0.06 -3.28 16 28 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.36 6.03 7.39 -39.29 -0.29 5.74 16 34 H 0.07 0.78 8.06 -51.93 -0.42 0.36 16 35 H 0.03 0.30 8.14 -51.93 -0.42 -0.13 16 36 H 0.08 0.52 7.80 -51.93 -0.40 0.12 16 37 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.08 0.83 7.47 -51.93 -0.39 0.44 16 42 H 0.09 1.75 8.14 -51.92 -0.42 1.32 16 43 H 0.09 1.71 7.84 -51.91 -0.41 1.30 16 44 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 45 H 0.21 2.80 8.06 -52.49 -0.42 2.37 16 LS Contribution 383.01 15.07 5.77 5.77 Total: -1.00 -35.89 383.01 -8.21 -44.09 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -6.98 Total: 4.89 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: -0.23 Total: -0.35 kcal Atomic # 7 Polarization: -53.06 SS G_CDS: -0.19 Total: -53.24 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: 0.12 Total: -13.11 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.71 Total: 17.53 kcal Atomic # 16 Polarization: -3.59 SS G_CDS: -1.99 Total: -5.58 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.89 -8.21 -44.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319048435.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.019 kcal (2) G-P(sol) polarization free energy of solvation -35.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds