Wall clock time and date at job start Tue Mar 31 2020 22:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 S 1.77229 * 127.34148 * 2 1 4 4 C 1.72204 * 94.84977 * 180.02562 * 3 2 1 5 5 O 1.21819 * 127.05957 * 180.02562 * 4 3 2 6 6 N 1.34247 * 105.88417 * 359.97438 * 4 3 2 7 7 C 1.46493 * 121.38267 * 179.97438 * 6 4 3 8 8 C 1.50703 * 109.47159 * 90.03009 * 7 6 4 9 9 O 1.21281 * 119.99486 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00124 * 180.02562 * 8 7 6 11 11 C 1.47424 * 125.64817 * 354.95517 * 10 8 7 12 12 C 1.54917 * 104.82979 * 204.09653 * 11 10 8 13 13 C 1.55153 * 101.58092 * 322.98916 * 12 11 10 14 14 C 1.47022 * 125.64603 * 174.65291 * 10 8 7 15 15 H 1.09001 * 109.88345 * 59.55994 * 14 10 8 16 16 C 1.53003 * 109.88341 * 298.38898 * 14 10 8 17 17 N 1.46498 * 109.47003 * 175.31523 * 16 14 10 18 18 C 1.36937 * 119.99786 * 184.93333 * 17 16 14 19 19 H 1.07997 * 119.99988 * 359.97438 * 18 17 16 20 20 C 1.38818 * 119.99972 * 179.97438 * 18 17 16 21 21 N 1.31614 * 119.99792 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00054 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.47054 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47328 * 119.99851 * 22 20 18 25 25 H 1.48498 * 109.47470 * 240.00406 * 22 20 18 26 26 C 1.32566 * 127.33798 * 180.32306 * 2 1 3 27 27 C 1.50700 * 121.64908 * 359.92974 * 26 2 1 28 28 H 1.08999 * 109.47098 * 359.96679 * 1 2 3 29 29 H 1.08993 * 109.47323 * 119.97042 * 1 2 3 30 30 H 1.09002 * 109.46964 * 239.97273 * 1 2 3 31 31 H 1.09007 * 109.47182 * 330.03151 * 7 6 4 32 32 H 1.08995 * 109.47517 * 210.03111 * 7 6 4 33 33 H 1.08997 * 110.36923 * 322.93073 * 11 10 8 34 34 H 1.08995 * 110.37021 * 85.26182 * 11 10 8 35 35 H 1.08999 * 111.00539 * 81.06422 * 12 11 10 36 36 H 1.09001 * 110.99782 * 204.88038 * 12 11 10 37 37 H 1.09005 * 110.71597 * 153.86940 * 13 12 11 38 38 H 1.08994 * 110.72273 * 276.96036 * 13 12 11 39 39 H 1.08997 * 109.47031 * 295.31816 * 16 14 10 40 40 H 1.08996 * 109.46773 * 55.31614 * 16 14 10 41 41 H 0.97004 * 120.00430 * 4.93297 * 17 16 14 42 42 H 0.97003 * 120.00006 * 179.97438 * 21 20 18 43 43 H 1.08991 * 109.46889 * 270.24635 * 27 26 2 44 44 H 1.08997 * 109.46850 * 30.24830 * 27 26 2 45 45 H 1.09000 * 109.47296 * 150.24197 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5820 1.4090 0.0000 4 6 4.0345 0.4840 -0.0008 5 8 5.1759 0.9096 -0.0006 6 7 3.6508 -0.8025 -0.0004 7 6 4.6312 -1.8910 -0.0014 8 6 4.9683 -2.2648 1.4191 9 8 4.4410 -1.6798 2.3414 10 7 5.8556 -3.2490 1.6644 11 6 6.4885 -4.1085 0.6474 12 6 6.8865 -5.3972 1.4095 13 6 7.3247 -4.8241 2.7831 14 6 6.3575 -3.6393 2.9901 15 1 5.5269 -3.9479 3.6248 16 6 7.0988 -2.4650 3.6323 17 7 7.4975 -2.8258 4.9950 18 6 8.0889 -1.8932 5.8049 19 1 8.2618 -0.8920 5.4388 20 6 8.4662 -2.2349 7.0964 21 7 8.2560 -3.4552 7.5423 22 14 9.2723 -0.9627 8.2013 23 1 9.3959 0.3228 7.4679 24 1 8.4402 -0.7627 9.4150 25 1 10.6222 -1.4366 8.5992 26 6 2.3110 -1.0540 -0.0059 27 6 1.7707 -2.4607 -0.0123 28 1 -0.3633 1.0277 0.0006 29 1 -0.3633 -0.5133 -0.8902 30 1 -0.3633 -0.5143 0.8898 31 1 5.5354 -1.5651 -0.5157 32 1 4.2129 -2.7564 -0.5153 33 1 5.7795 -4.3413 -0.1470 34 1 7.3733 -3.6220 0.2369 35 1 6.0326 -6.0656 1.5194 36 1 7.7152 -5.9035 0.9144 37 1 7.1998 -5.5689 3.5692 38 1 8.3568 -4.4759 2.7442 39 1 7.9860 -2.2301 3.0443 40 1 6.4430 -1.5950 3.6638 41 1 7.3426 -3.7252 5.3238 42 1 8.5199 -3.6941 8.4446 43 1 1.6373 -2.8033 1.0137 44 1 0.8112 -2.4790 -0.5291 45 1 2.4727 -3.1173 -0.5263 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324287368.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:08 Heat of formation + Delta-G solvation = -17.329638 kcal Electronic energy + Delta-G solvation = -27805.042655 eV Core-core repulsion = 23950.134271 eV Total energy + Delta-G solvation = -3854.908384 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.41255 -39.82998 -37.82451 -37.35206 -34.54451 -33.78257 -32.00348 -31.35627 -30.32296 -29.55640 -28.60852 -25.47334 -25.06251 -24.05445 -22.88185 -22.09180 -20.82848 -20.00553 -19.06074 -18.42530 -17.72982 -16.98200 -16.91123 -16.48490 -15.88356 -15.40384 -15.00277 -14.53771 -14.42673 -14.22459 -14.08347 -13.81523 -13.77082 -13.44267 -13.30472 -13.14711 -12.89865 -12.75473 -12.72770 -12.69833 -12.33121 -12.22488 -11.59719 -11.56375 -11.27014 -11.10211 -10.90905 -10.82634 -10.60899 -10.43292 -10.19923 -10.10252 -9.99079 -9.70146 -9.41355 -8.83125 -8.56759 -7.99542 -6.88300 -5.72710 -3.00812 0.81669 1.22822 1.58462 1.97596 2.47588 2.54742 3.00248 3.47626 3.53618 3.56692 4.17640 4.24546 4.37531 4.49675 4.66025 4.68047 4.74438 4.82921 4.89812 4.92836 5.07255 5.10566 5.28153 5.29637 5.32261 5.39172 5.45584 5.49835 5.59877 5.61548 5.73982 5.84926 5.94631 5.98895 6.02237 6.12447 6.37766 6.48011 6.52018 6.80808 6.95471 7.18564 7.50647 7.77201 8.11448 8.46276 9.57637 10.12831 10.48960 11.50422 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012155 B = 0.003150 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2303.034526 B = 8886.227139 C =10190.087566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C -0.209 4.209 3 S 0.005 5.995 4 C 0.488 3.512 5 O -0.468 6.468 6 N -0.515 5.515 7 C 0.085 3.915 8 C 0.511 3.489 9 O -0.512 6.512 10 N -0.609 5.609 11 C 0.095 3.905 12 C -0.132 4.132 13 C -0.122 4.122 14 C 0.132 3.868 15 H 0.078 0.922 16 C 0.147 3.853 17 N -0.727 5.727 18 C -0.234 4.234 19 H 0.070 0.930 20 C -0.015 4.015 21 N -0.935 5.935 22 Si 0.907 3.093 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 C 0.104 3.896 27 C -0.099 4.099 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.123 0.877 32 H 0.120 0.880 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.016 0.984 40 H 0.034 0.966 41 H 0.383 0.617 42 H 0.254 0.746 43 H 0.088 0.912 44 H 0.090 0.910 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.347 -3.539 -23.856 28.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.329 4.329 3 S 0.249 5.751 4 C 0.170 3.830 5 O -0.347 6.347 6 N -0.235 5.235 7 C -0.044 4.044 8 C 0.296 3.704 9 O -0.386 6.386 10 N -0.345 5.345 11 C -0.028 4.028 12 C -0.170 4.170 13 C -0.160 4.160 14 C 0.029 3.971 15 H 0.096 0.904 16 C 0.018 3.982 17 N -0.372 5.372 18 C -0.365 4.365 19 H 0.088 0.912 20 C -0.210 4.210 21 N -0.584 5.584 22 Si 0.738 3.262 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.219 1.219 26 C -0.006 4.006 27 C -0.158 4.158 28 H 0.091 0.909 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.141 0.859 32 H 0.138 0.862 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.102 0.898 37 H 0.104 0.896 38 H 0.102 0.898 39 H 0.033 0.967 40 H 0.052 0.948 41 H 0.217 0.783 42 H 0.064 0.936 43 H 0.107 0.893 44 H 0.109 0.891 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -15.068 -1.353 -23.315 27.793 hybrid contribution 0.938 -0.993 0.868 1.618 sum -14.131 -2.346 -22.447 26.628 Atomic orbital electron populations 1.20068 0.85721 1.03233 1.02732 1.23433 0.99614 0.92097 1.17712 1.85051 0.97785 1.11110 1.81201 1.21489 0.94681 0.84561 0.82232 1.90983 1.19266 1.71599 1.52854 1.45550 1.05725 1.06970 1.65262 1.21703 0.94789 0.91370 0.96524 1.20248 0.79479 0.79679 0.90989 1.90809 1.50947 1.51418 1.45462 1.48500 1.42762 1.34093 1.09118 1.22408 0.97737 0.91326 0.91295 1.22784 1.01762 0.95947 0.96542 1.22685 0.99926 0.96649 0.96717 1.21856 0.96606 0.95672 0.82935 0.90398 1.20923 0.95325 0.94628 0.87283 1.42189 1.72901 1.12987 1.09102 1.19277 1.30584 0.92876 0.93742 0.91217 1.24714 1.02199 0.96743 0.97366 1.69665 1.53510 1.17815 1.17438 0.86099 0.78677 0.80644 0.80735 1.20527 1.21822 1.21868 1.19165 0.81802 0.98164 1.01471 1.20770 1.01768 0.89031 1.04243 0.90882 0.90585 0.90467 0.85927 0.86243 0.90917 0.90968 0.90701 0.89789 0.89607 0.89808 0.96658 0.94808 0.78323 0.93630 0.89335 0.89091 0.90930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.35 9.56 36.01 0.34 -0.01 16 2 C -0.21 -2.05 6.72 -36.22 -0.24 -2.29 16 3 S 0.00 0.06 22.97 -107.50 -2.47 -2.41 16 4 C 0.49 7.58 8.27 53.82 0.45 8.03 16 5 O -0.47 -8.81 17.55 5.08 0.09 -8.72 16 6 N -0.51 -6.55 2.09 -118.57 -0.25 -6.80 16 7 C 0.09 0.93 4.84 -5.20 -0.03 0.91 16 8 C 0.51 7.84 7.64 -10.99 -0.08 7.75 16 9 O -0.51 -10.47 15.62 5.56 0.09 -10.38 16 10 N -0.61 -8.55 3.06 -163.01 -0.50 -9.05 16 11 C 0.10 0.88 6.65 -2.53 -0.02 0.86 16 12 C -0.13 -1.22 7.09 -24.58 -0.17 -1.40 16 13 C -0.12 -1.70 6.09 -24.89 -0.15 -1.85 16 14 C 0.13 2.28 2.92 -66.94 -0.20 2.08 16 15 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 16 C 0.15 3.32 5.66 -4.04 -0.02 3.30 16 17 N -0.73 -19.46 5.45 -59.91 -0.33 -19.79 16 18 C -0.23 -6.96 9.99 -15.06 -0.15 -7.11 16 19 H 0.07 2.08 7.83 -52.49 -0.41 1.67 16 20 C -0.01 -0.44 5.50 -17.43 -0.10 -0.54 16 21 N -0.94 -28.93 13.06 55.49 0.72 -28.21 16 22 Si 0.91 23.49 29.55 -169.99 -5.02 18.46 16 23 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 24 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 25 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 26 C 0.10 1.06 6.59 -82.51 -0.54 0.52 16 27 C -0.10 -0.64 9.46 36.01 0.34 -0.29 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.08 0.30 7.99 -51.93 -0.41 -0.11 16 30 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.12 1.27 7.80 -51.93 -0.41 0.87 16 32 H 0.12 0.77 5.74 -51.93 -0.30 0.47 16 33 H 0.07 0.43 7.51 -51.93 -0.39 0.04 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 38 H 0.08 1.28 7.78 -51.93 -0.40 0.87 16 39 H 0.02 0.36 8.04 -51.93 -0.42 -0.06 16 40 H 0.03 0.88 6.90 -51.93 -0.36 0.52 16 41 H 0.38 10.41 7.45 -40.82 -0.30 10.11 16 42 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 43 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.09 0.35 7.41 -51.93 -0.39 -0.03 16 45 H 0.07 0.35 6.18 -51.93 -0.32 0.03 16 LS Contribution 381.72 15.07 5.75 5.75 Total: -1.00 -38.72 381.72 -9.11 -47.83 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -6.63 Total: 3.36 kcal Atomic # 6 Polarization: 10.53 SS G_CDS: -0.57 Total: 9.96 kcal Atomic # 7 Polarization: -63.50 SS G_CDS: -0.35 Total: -63.85 kcal Atomic # 8 Polarization: -19.28 SS G_CDS: 0.18 Total: -19.11 kcal Atomic # 14 Polarization: 23.49 SS G_CDS: -5.02 Total: 18.46 kcal Atomic # 16 Polarization: 0.06 SS G_CDS: -2.47 Total: -2.41 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -38.72 -9.11 -47.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324287368.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.499 kcal (2) G-P(sol) polarization free energy of solvation -38.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds