Wall clock time and date at job start Tue Mar 31 2020 23:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47632 * 2 1 4 4 C 1.53043 * 109.46579 * 174.99849 * 3 2 1 5 5 C 1.53189 * 109.31233 * 181.38609 * 4 3 2 6 6 N 1.46923 * 108.77791 * 305.36242 * 5 4 3 7 7 S 1.65597 * 120.63356 * 233.58774 * 6 5 4 8 8 O 1.42099 * 106.40307 * 332.17384 * 7 6 5 9 9 O 1.42101 * 106.40253 * 199.25357 * 7 6 5 10 10 N 1.65604 * 107.21819 * 85.71343 * 7 6 5 11 11 C 1.38816 * 120.00038 * 65.37098 * 10 7 6 12 12 C 1.39796 * 119.58485 * 184.25698 * 11 10 7 13 13 C 1.38594 * 119.49171 * 180.02562 * 12 11 10 14 14 C 1.38389 * 118.68160 * 0.24768 * 13 12 11 15 15 C 1.40561 * 119.14578 * 359.48663 * 14 13 12 16 16 C 1.41321 * 119.78237 * 180.24858 * 15 14 13 17 17 H 1.07996 * 119.99512 * 150.43373 * 16 15 14 18 18 C 1.40022 * 119.99827 * 330.43709 * 16 15 14 19 19 N 1.30743 * 119.99645 * 161.48615 * 18 16 15 20 20 Si 1.86790 * 120.00431 * 341.48392 * 18 16 15 21 21 H 1.48501 * 109.47245 * 90.97808 * 20 18 16 22 22 H 1.48496 * 109.47502 * 210.98265 * 20 18 16 23 23 H 1.48506 * 109.47076 * 330.97982 * 20 18 16 24 24 N 1.31958 * 119.58864 * 4.23732 * 11 10 7 25 25 C 1.46932 * 118.73658 * 53.86556 * 6 5 4 26 26 C 1.53042 * 109.46214 * 295.06839 * 3 2 1 27 27 H 1.09005 * 109.46645 * 59.99846 * 1 2 3 28 28 H 1.08996 * 109.47401 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47314 * 300.00059 * 1 2 3 30 30 H 1.09001 * 109.47314 * 239.99941 * 2 1 3 31 31 H 1.09007 * 109.47340 * 120.00420 * 2 1 3 32 32 H 1.09002 * 109.45779 * 55.02254 * 3 2 1 33 33 H 1.08994 * 109.49216 * 61.43127 * 4 3 2 34 34 H 1.08999 * 109.52228 * 301.35722 * 4 3 2 35 35 H 1.09006 * 109.58135 * 185.57315 * 5 4 3 36 36 H 1.08999 * 109.70672 * 65.22843 * 5 4 3 37 37 H 0.96998 * 119.99685 * 245.38098 * 10 7 6 38 38 H 1.07994 * 120.25524 * 0.02562 * 12 11 10 39 39 H 1.08003 * 120.66100 * 179.97438 * 13 12 11 40 40 H 1.07999 * 120.42855 * 179.75441 * 14 13 12 41 41 H 0.97003 * 120.00129 * 179.97438 * 19 18 16 42 42 H 1.09000 * 109.58475 * 65.92124 * 25 6 5 43 43 H 1.08997 * 109.58658 * 186.35419 * 25 6 5 44 44 H 1.08998 * 109.49632 * 298.56928 * 26 3 2 45 45 H 1.09003 * 109.49410 * 58.65927 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5653 1.4440 0.1258 5 6 4.0693 2.8901 0.1603 6 7 3.5609 3.5966 -1.0234 7 16 4.5966 4.3958 -2.0387 8 8 5.7094 4.7899 -1.2478 9 8 3.8041 5.3148 -2.7780 10 7 5.1668 3.2874 -3.1289 11 6 4.2983 2.6953 -4.0356 12 6 4.7702 1.6961 -4.8919 13 6 3.9015 1.1066 -5.7967 14 6 2.5851 1.5327 -5.8278 15 6 2.1697 2.5377 -4.9373 16 6 0.8273 2.9791 -4.9538 17 1 0.3699 3.3507 -4.0488 18 6 0.0903 2.9347 -6.1436 19 7 -1.2155 2.9884 -6.1061 20 14 0.9727 2.7988 -7.7844 21 1 1.1306 1.3668 -8.1444 22 1 0.1780 3.4880 -8.8325 23 1 2.3112 3.4336 -7.6806 24 7 3.0375 3.0823 -4.0781 25 6 2.1152 3.5856 -1.2857 26 6 1.6337 2.1270 -1.3070 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6057 1.9812 0.8421 33 1 4.0013 0.9270 -0.7290 34 1 3.8555 0.9355 1.0452 35 1 5.1593 2.8975 0.1501 36 1 3.7092 3.3835 1.0631 37 1 6.1078 3.0518 -3.1339 38 1 5.8037 1.3859 -4.8487 39 1 4.2460 0.3333 -6.4673 40 1 1.8851 1.0955 -6.5244 41 1 -1.7260 2.9580 -6.9303 42 1 1.5968 4.1330 -0.4984 43 1 1.9154 4.0520 -2.2504 44 1 2.0878 1.6035 -2.1484 45 1 0.5485 2.1048 -1.4072 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364957994.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:42 Heat of formation + Delta-G solvation = -59.214076 kcal Electronic energy + Delta-G solvation = -29591.407024 eV Core-core repulsion = 25734.682395 eV Total energy + Delta-G solvation = -3856.724630 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.01399 -38.52958 -36.81124 -35.37650 -35.00169 -34.46265 -33.36381 -31.30223 -30.78233 -29.81971 -29.39105 -25.70365 -24.79488 -23.01900 -22.23896 -21.70192 -21.36404 -19.90777 -18.77577 -18.34384 -17.70448 -16.88403 -16.27709 -15.69500 -15.24800 -14.82431 -14.62282 -14.38546 -14.36182 -14.10668 -13.90080 -13.65355 -13.32970 -12.97831 -12.90125 -12.66729 -12.47273 -12.06618 -12.00603 -11.79618 -11.69012 -11.60118 -11.41211 -11.39499 -11.27276 -11.07802 -11.00970 -10.75722 -10.51737 -10.47416 -10.31591 -10.04535 -10.01359 -9.88993 -9.33808 -8.72145 -8.64134 -8.16034 -7.43903 -7.10142 -4.74532 0.97724 2.37067 2.49212 3.02101 3.13114 3.18123 3.24146 3.85796 3.87179 4.36885 4.77629 4.85021 4.88947 5.01801 5.09848 5.29869 5.37496 5.45198 5.48603 5.58748 5.64777 5.73134 5.79447 5.80487 5.91668 6.00096 6.09477 6.11536 6.13757 6.17872 6.26804 6.33806 6.36828 6.38790 6.43568 6.56316 6.64297 6.80105 6.88112 6.96532 7.00100 7.20906 7.33027 7.39839 7.72775 8.20464 8.34983 8.57736 9.37879 9.90587 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010478 B = 0.005870 C = 0.004615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2671.563589 B = 4768.492314 C = 6065.489865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.117 4.117 3 C -0.086 4.086 4 C -0.128 4.128 5 C 0.124 3.876 6 N -0.992 5.992 7 S 2.786 3.214 8 O -0.996 6.996 9 O -0.942 6.942 10 N -1.048 6.048 11 C 0.403 3.597 12 C -0.325 4.325 13 C -0.021 4.021 14 C -0.308 4.308 15 C 0.291 3.709 16 C -0.410 4.410 17 H 0.102 0.898 18 C 0.090 3.910 19 N -0.790 5.790 20 Si 0.915 3.085 21 H -0.267 1.267 22 H -0.289 1.289 23 H -0.249 1.249 24 N -0.572 5.572 25 C 0.124 3.876 26 C -0.121 4.121 27 H 0.063 0.937 28 H 0.048 0.952 29 H 0.049 0.951 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.067 0.933 37 H 0.420 0.580 38 H 0.104 0.896 39 H 0.106 0.894 40 H 0.113 0.887 41 H 0.289 0.711 42 H 0.055 0.945 43 H 0.122 0.878 44 H 0.074 0.926 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.763 -5.275 8.686 11.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.154 4.154 3 C -0.104 4.104 4 C -0.167 4.167 5 C -0.002 4.002 6 N -0.833 5.833 7 S 2.794 3.206 8 O -0.980 6.980 9 O -0.925 6.925 10 N -0.796 5.796 11 C 0.165 3.835 12 C -0.352 4.352 13 C -0.045 4.045 14 C -0.330 4.330 15 C 0.166 3.834 16 C -0.442 4.442 17 H 0.120 0.880 18 C -0.133 4.133 19 N -0.413 5.413 20 Si 0.741 3.259 21 H -0.194 1.194 22 H -0.216 1.216 23 H -0.172 1.172 24 N -0.294 5.294 25 C -0.001 4.001 26 C -0.160 4.160 27 H 0.082 0.918 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.097 0.903 36 H 0.086 0.914 37 H 0.254 0.746 38 H 0.122 0.878 39 H 0.124 0.876 40 H 0.131 0.869 41 H 0.100 0.900 42 H 0.074 0.926 43 H 0.140 0.860 44 H 0.093 0.907 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.233 -3.575 9.230 11.196 hybrid contribution 1.011 -1.411 -1.391 2.224 sum 6.244 -4.985 7.839 11.193 Atomic orbital electron populations 1.21815 0.95888 1.01214 1.02193 1.21535 0.96006 0.96468 1.01403 1.21154 0.94639 0.95867 0.98763 1.21951 0.96525 0.96263 1.01930 1.21318 0.98431 0.92357 0.88075 1.57886 1.18539 1.69743 1.37087 1.02031 0.72445 0.73552 0.72543 1.93583 1.53533 1.81159 1.69746 1.93652 1.69284 1.59102 1.70457 1.53738 1.17752 1.60809 1.47319 1.17846 0.88778 0.89133 0.87712 1.20673 1.00051 1.07296 1.07146 1.20779 0.93072 0.95886 0.94803 1.21872 0.96843 1.05768 1.08537 1.18103 0.91549 0.87760 0.85990 1.19177 0.91950 1.35120 0.97935 0.87972 1.26079 0.94565 0.90825 1.01786 1.69607 1.06908 1.33175 1.31631 0.86315 0.80966 0.78983 0.79621 1.19359 1.21614 1.17218 1.67606 1.00263 1.30226 1.31304 1.21673 0.77521 0.97344 1.03534 1.21980 1.01339 0.95732 0.96973 0.91755 0.93282 0.93144 0.92043 0.92722 0.91584 0.91539 0.91504 0.90282 0.91419 0.74578 0.87825 0.87587 0.86919 0.89980 0.92628 0.86037 0.90691 0.90833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.67 37.16 0.36 -1.44 16 2 C -0.12 -1.38 5.40 -26.74 -0.14 -1.53 16 3 C -0.09 -1.09 2.15 -90.58 -0.19 -1.28 16 4 C -0.13 -1.52 5.36 -26.61 -0.14 -1.66 16 5 C 0.12 1.59 6.36 -3.71 -0.02 1.57 16 6 N -0.99 -15.85 3.34 -113.27 -0.38 -16.23 16 7 S 2.79 50.74 5.75 -107.50 -0.62 50.12 16 8 O -1.00 -18.51 17.00 -57.17 -0.97 -19.48 16 9 O -0.94 -21.00 15.45 -57.17 -0.88 -21.88 16 10 N -1.05 -17.97 5.89 31.15 0.18 -17.79 16 11 C 0.40 8.22 7.41 -155.33 -1.15 7.07 16 12 C -0.32 -6.22 9.95 -38.87 -0.39 -6.61 16 13 C -0.02 -0.41 10.15 -39.39 -0.40 -0.81 16 14 C -0.31 -6.90 7.31 -38.65 -0.28 -7.19 16 15 C 0.29 7.00 5.95 -85.00 -0.51 6.50 16 16 C -0.41 -10.39 9.78 -37.74 -0.37 -10.76 16 17 H 0.10 2.70 8.06 -52.49 -0.42 2.28 16 18 C 0.09 2.21 5.39 -17.35 -0.09 2.11 16 19 N -0.79 -19.52 13.92 55.55 0.77 -18.74 16 20 Si 0.91 19.91 24.56 -169.99 -4.17 15.73 16 21 H -0.27 -5.53 6.48 56.52 0.37 -5.16 16 22 H -0.29 -6.07 7.11 56.52 0.40 -5.67 16 23 H -0.25 -5.74 7.05 56.52 0.40 -5.34 16 24 N -0.57 -13.08 5.70 -10.33 -0.06 -13.14 16 25 C 0.12 2.09 5.68 -3.48 -0.02 2.07 16 26 C -0.12 -1.92 5.16 -26.39 -0.14 -2.06 16 27 H 0.06 0.85 6.53 -51.93 -0.34 0.51 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.95 7.25 -51.93 -0.38 0.58 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.42 5.74 8.82 -34.47 -0.30 5.44 16 38 H 0.10 1.68 8.06 -52.49 -0.42 1.25 16 39 H 0.11 1.77 8.06 -52.48 -0.42 1.35 16 40 H 0.11 2.50 4.57 -52.49 -0.24 2.26 16 41 H 0.29 6.48 8.29 -40.82 -0.34 6.14 16 42 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.12 2.48 5.61 -51.93 -0.29 2.18 16 44 H 0.07 1.39 7.54 -51.93 -0.39 0.99 16 45 H 0.07 1.18 6.50 -51.93 -0.34 0.84 16 LS Contribution 360.54 15.07 5.43 5.43 Total: -1.00 -29.09 360.54 -10.71 -39.81 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: -6.53 Total: 10.20 kcal Atomic # 6 Polarization: -10.54 SS G_CDS: -3.49 Total: -14.03 kcal Atomic # 7 Polarization: -66.42 SS G_CDS: 0.52 Total: -65.90 kcal Atomic # 8 Polarization: -39.51 SS G_CDS: -1.86 Total: -41.36 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -4.17 Total: 15.73 kcal Atomic # 16 Polarization: 50.74 SS G_CDS: -0.62 Total: 50.12 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -29.09 -10.71 -39.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364957994.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.407 kcal (2) G-P(sol) polarization free energy of solvation -29.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds